BAC Information

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BAC

Clone NameB6Ng01-226N11
Chromosome14 (Build37)
Map Location 66,209,194 - 66,210,342
singlet/doubletsinglet
Overlap geneElp3
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc
Downstream geneGm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226N11.bB6Ng01-226N11.g
ACCGA040666GA040667
length1,152994
definitionB6Ng01-226N11.b B6Ng01-226N11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagggcttgggaaacttaggcaagaggaatgtcttgaatttgag
gccagcttgggatacaaaatgagaccctgtgtcagacagacagatcaacc
cttacttaaggacacgacagcaagactgcccttctatagatccacttact
tatttagatcgacgtctttcccctgctcatgagcttcaaccagctgcttg
ataacgtctcctatagtcagcatcatcagctcagccgggctgaggtcccc
tgcagagaacatttcaaccacagagtctcatcattcagtctctttaacaa
ttatttatttgtacatgcaacgaaattttaagtgtgtcagtcaggagcct
cttgagtgttgagattacagtacgtactagctggcctggcctatctaagg
gtctagctgcatttctaagctactgtctgctgacctgcatgatcctgtct
tggcagcctgctctctcatccacagacacaggagatgctggcacgattgc
cacatcatcctactgtcaatcacaaatgactcatccaagcataagcaacc
catccaagccagaaaaatctcagctctttttgtcaagggtcaggagagcc
catcttttaccagctgacaacagtggtgcgctgtgttagcttgggtgatg
gcagcaaacacgcctcctgcctgctggtgtgaaaaagaaagaagtcatca
taggagtgtggataagaacaccatggaagtcacccatttgaaactcacaa
tgacactgtaaagttggtattgtcgtcctattttatacatgtaaaactgg
atcaaagcaagttcagatgtcattgtaaagggcagggttagatctcaggt
tcaggtctttttaccatattgtgcactgtgtactccaccaacttaatgag
gcaaagctaatacatatcaaacaatgagagagaagtcttatggatagcca
aagactagtgatttcccagcattctcagttctacaaggtgcctcagaggc
tatgtacagaggtggacttggggtacgggatgagcacagagatgagatta
tcaccctgtcaacttgcatatctataacatctcatcttatttggtgatgt
tgttgtgtgttgcatgcagtgctgtgtgtggccgcatacccatgcatatg
ta
gaattctagaaagtttccattttagccatctgcatatggcttgggtggcc
tgcctcaaggcttgctgtaccaatgtgttctggcatgtctcccctctctg
attttccttccttctctagggatgcctccctctgtgatgatctaagttct
ctgtgcctttaaattgcacaggcagattttgacagaactcatcaatgcca
aaagatccaaagcagaagaaaacactgctttgcagtgaatgtctacgaaa
gatgaactggagtagaaaaccctagaaaactgcacggcaaagtgagaatg
aaaatcgtctgcagctccaggataatgtaaatgctctcatctttgaaaaa
cactgcaggcttgtacaaccactctggaaatcagtctggccgttcctcag
aaaattggacatagtactaccggaggatccagcaatacctcttctgggca
tatatccagaagatgtcccaaccggtaagaaggacacatgttccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatatggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa
tgggtgaaccttgagggcatcatcctgagtgaggtaatacattcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccaaaacct
aggatacccaagatataagatacaatttgctaaacacatgaaactcaaga
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatggaaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatctagagactgccatatcccgggatccaccccataatc
agcttccaaacgctgacaccattgcatatactagcatgaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66209194_66210342
seq2: B6Ng01-226N11.b_48_1199

seq1  GAATTCCAGGGCTTGGGAAACTTAGGCAAGAGGAATGTCTTGAATTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTTGGGAAACTTAGGCAAGAGGAATGTCTTGAATTTGAG  50

seq1  GCCAGCTTGGGATACAAAATGAGACCCTGTGTCAGACAGACAGATCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTGGGATACAAAATGAGACCCTGTGTCAGACAGACAGATCAACC  100

seq1  CTTACTTAAGGACACGACAGCAAGACTGCCCTTCTATAGATCCACTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTAAGGACACGACAGCAAGACTGCCCTTCTATAGATCCACTTACT  150

seq1  TATTTAGATCGACGTCTTTCCCCTGCTCATGAGCTTCAACCAGCTGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGATCGACGTCTTTCCCCTGCTCATGAGCTTCAACCAGCTGCTTG  200

seq1  ATAACGTCTCCTATAGTCAGCATCATCAGCTCAGCCGGGCTGAGGTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGTCTCCTATAGTCAGCATCATCAGCTCAGCCGGGCTGAGGTCCCC  250

seq1  TGCAGAGAACATTTCAACCACAGAGTCTCATCATTCAGTCTCTTTAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAACATTTCAACCACAGAGTCTCATCATTCAGTCTCTTTAACAA  300

seq1  TTATTTATTTGTACATGCAACGAAATTTTAAGTGTGTCAGTCAGGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTGTACATGCAACGAAATTTTAAGTGTGTCAGTCAGGAGCCT  350

seq1  CTTGAGTGTTGAGATTACAGTACGTACTAGCTGGCCTGGCCTATCTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGTTGAGATTACAGTACGTACTAGCTGGCCTGGCCTATCTAAGG  400

seq1  GTCTAGCTGCATTTCTAAGCTACTGTCTGCTGACCTGCATGATCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCTGCATTTCTAAGCTACTGTCTGCTGACCTGCATGATCCTGTCT  450

seq1  TGGCAGCCTGCTCTCTCATCCACAGACACAGGAGATGCTGGCACGATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTGCTCTCTCATCCACAGACACAGGAGATGCTGGCACGATTGC  500

seq1  CACATCATCCTACTGTCAATCACAAATGACTCATCCAAGCATAAGCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATCCTACTGTCAATCACAAATGACTCATCCAAGCATAAGCAACC  550

seq1  CATCCAAGCCAGAAAAATCTCAGCTCTTTTTGTCAAGGGTCAGGAGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGCCAGAAAAATCTCAGCTCTTTTTGTCAAGGGTCAGGAGAGCC  600

seq1  CATCTTTTACCAGCTGACAACAGTGGTGCGCTGTGTTAGCTTGGGTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTACCAGCTGACAACAGTGGTGCGCTGTGTTAGCTTGGGTGATG  650

seq1  GCAGCAAACACGCCTCCTGCCTGCTGGTGTGAAAAAGAAAGAAGTCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAACACGCCTCCTGCCTGCTGGTGTGAAAAAGAAAGAAGTCATCA  700

seq1  TAGGAGTGTGGATAAGAACACCATGGAAGTCACCCATTTGAAACTCACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGTGGATAAGAACACCATGGAAGTCACCCATTTGAAACTCACAA  750

seq1  TGACACTGTAAAGTTGGTATTGTCGTCCTATTTTATACATGTAAAACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGTAAAGTTGGTATTGTCGTCCTATTTTATACATGTAAAACTGG  800

seq1  ATCAAAGCAAGTTCAGATGTCATTGTAAAGGGCAGGGTTAGATCTCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAAGTTCAGATGTCATTGTAAAGGGCAGGGTTAGATCTCAGGT  850

seq1  TCAGGTCTTTTTACCATATTGTGCACTGTGTACTCCACCAACTTAATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTTTTTACCATATTGTGCACTGTGTACTCCACCAACTTAATGAG  900

seq1  GCAAAGCTAATACATATCAAACAATGAGAGAGAAGTC-TATGGATAGCCA  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAAAGCTAATACATATCAAACAATGAGAGAGAAGTCTTATGGATAGCCA  950

seq1  AAGACTAGTGATTTCCCAGCATTCTCAGTTCTACAAAGGTGCCTCAGAGG  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGACTAGTGATTTCCCAGCATTCTCAGTTCTAC-AAGGTGCCTCAGAGG  999

seq1  CTATGTAACAGAGGTGGACTTGGGGTACGGGATGAGCACAGAAGATGAGA  1049
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  CTATGT-ACAGAGGTGGACTTGGGGTACGGGATGAGCACAG-AGATGAGA  1047

seq1  -TATCACCCTGTCAACTTGCATATCTAT-ACATCTCCATCTATTTGGGTG  1097
       ||||||||||||||||||||||||||| |||||| |||||  || ||||
seq2  TTATCACCCTGTCAACTTGCATATCTATAACATCT-CATCTTATTTGGTG  1096

seq1  AGTGTGTGTGTGTG-TGCATGCA-TGC-GTGTGTG--CGCATACACATGC  1142
      | |||   |||||| |||||||| ||| |||||||  ||||||| |||||
seq2  A-TGTTGTTGTGTGTTGCATGCAGTGCTGTGTGTGGCCGCATACCCATGC  1145

seq1  ATATGTA  1149
      |||||||
seq2  ATATGTA  1152