BAC Information

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BAC

Clone NameB6Ng01-227C14
Chromosome14 (Build37)
Map Location 113,296,153 - 113,453,676
singlet/doubletdoublet
Overlap geneLOC100043509
Upstream geneLOC100043501, EG223186
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227C14.bB6Ng01-227C14.g
ACCGA040902GA040903
length1,1911,209
definitionB6Ng01-227C14.b B6Ng01-227C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,452,477 - 113,453,676)(113,296,153 - 113,297,360)
sequence
gaattcctcatcttagcttgtatttgtttcattaatagttattgtgttaa
aatgccctgaatttaacttgagggataaagagtttgtgtatgcattactt
gtgaaacctataagtgacaggaatttgtagtagctagtcactgtcacagt
caagagcagaaagagaataaagacctttaggattgttctcctctctgcct
ttacaacttcatggtgttcaggttcccctaactaggcaattttgcaacta
acaatggaagaagcttcctactttaagtaaaataatgaaaataaccctcc
atccatgccctcaggcaaccctagtcatgataatcccccttttcgctccc
ttccaagatacactttaattgtgtcaagtagacaataaaactatcaagtt
atgtaaagtcttaaaacaccataaacatatatgattttgaacatttctat
gacagacacacactattctaattttccctttaatttactgtcattaaagt
taacaggcaaagcaaataaacggaatctaaaaatcactatataattttgt
gttcattttgacctaattagaaacatgatttgttttcaaacacacttagc
tataaacacttttactctggcaacttatgattaagatccatgacaattat
taaactatggggaagtgaaaatcacatgtaggtttatggaaaaaattcct
acttgaatttgtataaaatggacattgctgcatgtgtttcacttgtcttg
aaatgcgctgtactaagacatccttcctgggtattatcttgggaatgtaa
accacttgcctgttgaaacagaactgaagggaaattgttaaaggaaattg
cccgatgcttgagtgtgtagcactggcagtgatggttttttaaagctttt
atacagcataaagttgctcttctctaaagcacaggaacaaacgagtctag
ggaactataaaatcgtgagtattgttacatagtttgaaatgtacattaaa
caaattatcaaaggactcaataattatttcttcttttggaatcaaattaa
ttgatttttttcttgagtaagatattatcccagtgtcagccagctgtgga
tggtaaggctgtcaaacatcatgaacttacctctgcctgtgaatcatctc
tagaaaccacgttctgctttagtcaggtttggtatattcct

gaattctcaattgaggaatttcgaatggctgagaagcacttgaagagatg
ttggaagttcttaatcatcaggaaaatgcaaatcaaaacaactgagatat
tccatcttacacaggtcagagtggtcatatcttcttgaaggaaataagta
aatataaaaggcacagatttaaattggaggtttactgagcaaaacaaagg
aagcaagtaccccaaagagagattagaaaggaccactcacaaaagaggga
gaggaaaatgagctctgaattgtcaaattaaggaaggttcgcaaacattt
gtgagttacaagacattcttaatcccaaattgagacagaaatattctttt
tcttttgaaggttatttctgctcatgattctctaggaaagttatgtgttg
tcaattcaacagtacatccgatgtcttcaaggatgccgaccccttgttgg
tgtacatatttgagaaaatatagtgacaccatttttttgtgagaggggaa
aagacctaccagcaacctgacgatggtctaaccacaaaagggtattttat
acccctataatacacatctaccagaatatagccagtcatgggtttcttga
gtaaatcctatctaaaacttaaatagactatccaatttcctcccatgatt
gctttttgttttactggtgtctctgtgtaacagactttgctatcctggaa
tccactttatataccaggctggcatctaactcccagagatcaaactgcct
ccatctcctgagcactaggattaaagacttgtatccccactcctggccca
accacaaggctcttatacataagttcagacatttcagtttcatgtttgag
gatcaacaccctggcagacaggaaacaaaacttgggttctttgtgggtct
cttttctacgagttctatgactcagatagttttctaagtagtatctgaat
ttgaacagtgatatttctatagatccggagcagagtgataaacattaaaa
gaaaaaaagtgttagtcattcagtaaggggaagcagatgaaatagaaaca
gtgatagcagaagaagactctggcatgcaggcatgactgtttgtctctta
tgacaaccatattcatattatgaaattaacaaattgctgtagctggaaat
ccaggttttagggaattttttcaagaagctttcaaccggtggtgaagcat
aaggtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113452477_113453676
seq2: B6Ng01-227C14.b_44_1234 (reverse)

seq1  AGGA--ATACAAACCCTGACTAAGGCAGAAGGTGTGTTTTCTAGAGAAAG  48
      ||||  |||| || ||||||||| ||||||   ||| |||||||||  | 
seq2  AGGAATATACCAAACCTGACTAAAGCAGAA--CGTGGTTTCTAGAG--AT  46

seq1  AATTCACA-GCAGA-GTAAGTTCATGATGTTTGTGACAGCCCTTACCCAT  96
       ||||||| ||||| ||||||||||||||||  |||||| ||||| ||||
seq2  GATTCACAGGCAGAGGTAAGTTCATGATGTT--TGACAG-CCTTA-CCAT  92

seq1  CCCAACAAGCTTGCTGACACTGGGGATAATATCTTTACCTCAAGGAAAAA  146
      ||  || |||| ||||||||| |||||||||||||   |||||| |||||
seq2  CC--AC-AGCTGGCTGACACT-GGGATAATATCTT--ACTCAAGAAAAAA  136

seq1  ATCAATTAATTTTGATTTCAAAAG-AGAAATAATTATTTGAGTCCTTTGA  195
      ||||||||| ||||||| |||||| ||||||||||| |||||||||||||
seq2  ATCAATTAA-TTTGATTCCAAAAGAAGAAATAATTA-TTGAGTCCTTTGA  184

seq1  TAATTTGTTTTAATGTACATTTTCAAACTATGTAAACATACTCACGATTT  245
      ||||||| ||||||||||| |||||||||||||||  |||||||||||||
seq2  TAATTTG-TTTAATGTACA-TTTCAAACTATGTAACAATACTCACGATTT  232

seq1  TATAGTTCCCTAGACTCGTTTGTTCCTGTGCTTTAGAGAAGAGCAACTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTCCCTAGACTCGTTTGTTCCTGTGCTTTAGAGAAGAGCAACTTT  282

seq1  ATGCTGTAT-AAAGCTTT-AAAAACCATCACTGCCAGTGCTACACACTCA  343
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  ATGCTGTATAAAAGCTTTAAAAAACCATCACTGCCAGTGCTACACACTCA  332

seq1  AGCATCGGGCAATTTCC-TTAACAATTTCCCTTCAGTTCTGTTTCAACAG  392
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCATCGGGCAATTTCCTTTAACAATTTCCCTTCAGTTCTGTTTCAACAG  382

seq1  GCAAGTGGTTTACATT-CCAAGATAATACCCAGGAAGGATGTCTTAGTAC  441
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAAGTGGTTTACATTCCCAAGATAATACCCAGGAAGGATGTCTTAGTAC  432

seq1  AGCGCATTTCAAGACAAGTGAAACACATGCAGCAATGTCCATTTTATACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCATTTCAAGACAAGTGAAACACATGCAGCAATGTCCATTTTATACA  482

seq1  AATTCAAGTAGGAATTTTTTCCATAAACCTACATGTGATTTTCACTTCCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTAGGAATTTTTTCCATAAACCTACATGTGATTTTCACTTCCC  532

seq1  CATAGTTTAATAATTGTCATGGATCTTAATCATAAGTTGCCAGAGTAAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTAATAATTGTCATGGATCTTAATCATAAGTTGCCAGAGTAAAA  582

seq1  GTGTTTATAGCTAAGTGTGTTTGAAAACAAATCATGTTTCTAATTAGGTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATAGCTAAGTGTGTTTGAAAACAAATCATGTTTCTAATTAGGTC  632

seq1  AAAATGAACACAAAATTATATAGTGATTTTTAGATTCCGTTTATTTGCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACACAAAATTATATAGTGATTTTTAGATTCCGTTTATTTGCTT  682

seq1  TGCCTGTTAACTTTAATGACAGTAAATTAAAGGGAAAATTAGAATAGTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTAACTTTAATGACAGTAAATTAAAGGGAAAATTAGAATAGTGT  732

seq1  GTGTCTGTCATAGAAATGTTCAAAATCATATATGTTTATGGTGTTTTAAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTCATAGAAATGTTCAAAATCATATATGTTTATGGTGTTTTAAG  782

seq1  ACTTTACATAACTTGATAGTTTTATTGTCTACTTGACACAATTAAAGTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATAACTTGATAGTTTTATTGTCTACTTGACACAATTAAAGTGT  832

seq1  ATCTTGGAAGGGAGCGAAAAGGGGGATTATCATGACTAGGGTTGCCTGAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAAGGGAGCGAAAAGGGGGATTATCATGACTAGGGTTGCCTGAG  882

seq1  GGCATGGATGGAGGGTTATTTTCATTATTTTACTTAAAGTAGGAAGCTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGATGGAGGGTTATTTTCATTATTTTACTTAAAGTAGGAAGCTTC  932

seq1  TTCCATTGTTAGTTGCAAAATTGCCTAGTTAGGGGAACCTGAACACCATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGTTAGTTGCAAAATTGCCTAGTTAGGGGAACCTGAACACCATG  982

seq1  AAGTTGTAAAGGCAGAGAGGAGAACAATCCTAAAGGTCTTTATTCTCTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTAAAGGCAGAGAGGAGAACAATCCTAAAGGTCTTTATTCTCTTT  1032

seq1  CTGCTCTTGACTGTGACAGTGACTAGCTACTACAAATTCCTGTCACTTAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGACTGTGACAGTGACTAGCTACTACAAATTCCTGTCACTTAT  1082

seq1  AGGTTTCACAAGTAATGCATACACAAACTCTTTATCCCTCAAGTTAAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCACAAGTAATGCATACACAAACTCTTTATCCCTCAAGTTAAATT  1132

seq1  CAGGGCATTTTAACACAATAACTATTAATGAAACAAATACAAGCTAAGAT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCATTTTAACACAATAACTATTAATGAAACAAATACAAGCTAAGAT  1182

seq1  GAGGAATTC  1200
      |||||||||
seq2  GAGGAATTC  1191


seq1: chr14_113296153_113297360
seq2: B6Ng01-227C14.g_65_1273

seq1  GAATTCTCAATTGAGGAATTTCGAATGGCTGAGAAGCACTTGAAGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTGAGGAATTTCGAATGGCTGAGAAGCACTTGAAGAGATG  50

seq1  TTGGAAGTTCTTAATCATCAGGAAAATGCAAATCAAAACAACTGAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTCTTAATCATCAGGAAAATGCAAATCAAAACAACTGAGATAT  100

seq1  TCCATCTTACACAGGTCAGAGTGGTCATATCTTCTTGAAGGAAATAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTACACAGGTCAGAGTGGTCATATCTTCTTGAAGGAAATAAGTA  150

seq1  AATATAAAAGGCACAGATTTAAATTGGAGGTTTACTGAGCAAAACAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGGCACAGATTTAAATTGGAGGTTTACTGAGCAAAACAAAGG  200

seq1  AAGCAAGTACCCCAAAGAGAGATTAGAAAGGACCACTCACAAAAGAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTACCCCAAAGAGAGATTAGAAAGGACCACTCACAAAAGAGGGA  250

seq1  GAGGAAAATGAGCTCTGAATTGTCAAATTAAGGAAGGTTCGCAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATGAGCTCTGAATTGTCAAATTAAGGAAGGTTCGCAAACATTT  300

seq1  GTGAGTTACAAGACATTCTTAATCCCAAATTGAGACAGAAATATTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTACAAGACATTCTTAATCCCAAATTGAGACAGAAATATTCTTTT  350

seq1  TCTTTTGAAGGTTATTTCTGCTCATGATTCTCTAGGAAAGTTATGTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAGGTTATTTCTGCTCATGATTCTCTAGGAAAGTTATGTGTTG  400

seq1  TCAATTCAACAGTACATCCGATGTCTTCAAGGATGCCGACCCCTTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCAACAGTACATCCGATGTCTTCAAGGATGCCGACCCCTTGTTGG  450

seq1  TGTACATATTTGAGAAAATATAGTGACACCATTTTTTTGTGAGAGGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATTTGAGAAAATATAGTGACACCATTTTTTTGTGAGAGGGGAA  500

seq1  AAGACCTACCAGCAACCTGACGATGGTCTAACCACAAAAGGGTATTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTACCAGCAACCTGACGATGGTCTAACCACAAAAGGGTATTTTAT  550

seq1  ACCCCTATAATACACATCTACCAGAATATAGCCAGTCATGGGTTTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTATAATACACATCTACCAGAATATAGCCAGTCATGGGTTTCTTGA  600

seq1  GTAAATCCTATCTAAAACTTAAATAGACTATCCAATTTCCTCCCATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCTATCTAAAACTTAAATAGACTATCCAATTTCCTCCCATGATT  650

seq1  GCTTTTTGTTTTACTGGTGTCTCTGTGTAACAGACTTTGCTATCCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGTTTTACTGGTGTCTCTGTGTAACAGACTTTGCTATCCTGGAA  700

seq1  TCCACTTTATATACCAGGCTGGCATCTAACTCCCAGAGATCAAACTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTATATACCAGGCTGGCATCTAACTCCCAGAGATCAAACTGCCT  750

seq1  CCATCTCCTGAGCACTAGGATTAAAGACTTGTATCCCCACTCCTGGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTGAGCACTAGGATTAAAGACTTGTATCCCCACTCCTGGCCCA  800

seq1  ACCACAAGGCTCTTATACATAAGTTCAGACATTTCAGTTTCATGTTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGGCTCTTATACATAAGTTCAGACATTTCAGTTTCATGTTTGAG  850

seq1  GATCAACACCCTGGCAGACAGGAAACAAAACTTGGGTTCTTTGTGGGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACACCCTGGCAGACAGGAAACAAAACTTGGGTTCTTTGTGGGTCT  900

seq1  CTTTTCTACGAGTTCTATGACTCAGATAGTTTTCTAAGTAGTATCTGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTACGAGTTCTATGACTCAGATAGTTTTCTAAGTAGTATCTGAAT  950

seq1  TTGAACAGTGATATTTCTATAGATCCGGAGCAGAGTGATAAACATTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGTGATATTTCTATAGATCCGGAGCAGAGTGATAAACATTAAAA  1000

seq1  GAAAAAAAGTGTTAGTCATTCAGGTAGGGGAAGCAGATGAAATAGAAACA  1050
      |||||||||||||||||||||||  |||||||||||||||||||||||| 
seq2  GAAAAAAAGTGTTAGTCATTCAGTAAGGGGAAGCAGATGAAATAGAAAC-  1049

seq1  AGTGAATAGCAG-AGAAGACTCTGGCATTGCAAGCAATGACTGTTTGTCT  1099
      |||| ||||||| |||||||||||||| |||| || ||||||||||||||
seq2  AGTG-ATAGCAGAAGAAGACTCTGGCA-TGCAGGC-ATGACTGTTTGTCT  1096

seq1  C-TATGACAACCAATATTCATATTATGAAATT-ACAAATTGCTGTAGCTT  1147
      | |||||||||| ||||||||||||||||||| |||||||||||||||| 
seq2  CTTATGACAACC-ATATTCATATTATGAAATTAACAAATTGCTGTAGCTG  1145

seq1  GAGATCAAGGTTTTATGGTGATTTTTTTAAAGGAAGC-TTCAACTGTTG-  1195
      || ||| ||||||||  | || |||||| || ||||| |||||| | || 
seq2  GAAATCCAGGTTTTA--GGGAATTTTTTCAA-GAAGCTTTCAACCGGTGG  1192

seq1  ---AGC-TAAGGTCATG  1208
         ||| ||||||||||
seq2  TGAAGCATAAGGTCATG  1209


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