BAC Information

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BAC

Clone NameB6Ng01-228J12
Chromosome14 (Build37)
Map Location 111,160,395 - 111,161,087
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6
Downstream geneEG668772, EG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J12.bB6Ng01-228J12.g
ACCGA041968GA041969
length1,209694
definitionB6Ng01-228J12.b B6Ng01-228J12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaaacggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagagacaatgcgcagagaggcagtgtgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatatgtgcagattaaaga
gcttgccgagtcggtccgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctttggcatgaaactgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcaaacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactggtcaattaacaaaagttgtccagggacctcaggagtccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
ttcagagcaagccgcgcctctggtagaacagctaatctatgagcaagcca
caaggagtgccgagcggccatagccccaagaaagaacaaaggcttacaga
ctggctcaggtctgtcgagagcttgggggacctctcaccaatgcagctta
gcggccgccatcctccaatctcagaaccgctccatgagcagaaatgatca
gaggacatgtttttattgcggaaagcctgggcatttagaaagatgcagag
cttcagataacaggggggacttctcactctttgctctagtgtggcagggt
ttatcatagagctgacagtgtcgctcttgtgaaggaatttaaggcagatt
ccttcccacttgaatagtcaattcaactgaatggtgccaaaaccgtgtca
tatctgggg
gaattctttcatgttgaaaaatgagcaatatacaaaaatgcaggcaagcc
cttgtgctgaaacagtgttaatccaagaagtttgcttacagggagaaact
ctgaggtaggacctaactctcctttgtattattattattattattattat
tattattattattattattattgcctatacatgactgtagagtatgttgc
agagataagtagcctctcaagaaaaattatatatatatatatatatatat
atatatatatatatatatatatatatacacacacaatgatatcagatcac
atgttacatgaatgtgtaaaattccatgaaggcccagccctatatgaaag
acaattaatggcttttgagaaagggagattggaacttttctaatgagaaa
cctcaaaaggttacccagaatcaagtgctcagctcaaacacacatgtgta
tgagtatagaagatattttgaagcgttataaaactcagagaattaacctt
tgattgataaattaaacctcagataagtgaaaaatatcctttcagaatta
acctatatttgtcctaaagatacatattcattttatattttacttggaac
atgcttgaaaaatgtaagactgtaactatcttaattcaaaaaaattctaa
aatttttcccttccaaaaagtatgtttaagggggggagggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111160395_111161087
seq2: B6Ng01-228J12.g_68_761

seq1  GAATTCTTTCATGTTGAAAAATGAGCAATATACAAAAATGCAGGCAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGTTGAAAAATGAGCAATATACAAAAATGCAGGCAAGCC  50

seq1  CTTGTGCTGAAACAGTGTTAATCCAAGAAGTTTGCTTACAGGGAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTGAAACAGTGTTAATCCAAGAAGTTTGCTTACAGGGAGAAACT  100

seq1  CTGAGGTAGGACCTAACTCTCCTTTGTATTATTATTATTATTATTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAGGACCTAACTCTCCTTTGTATTATTATTATTATTATTATTAT  150

seq1  TATTATTATTATTATTATTATTGCCTATACATGACTGTAGAGTATGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTATTGCCTATACATGACTGTAGAGTATGTTGC  200

seq1  AGAGATAAGTAGCCTCTCAAGAAAAATTATATATATATATATATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGTAGCCTCTCAAGAAAAATTATATATATATATATATATATAT  250

seq1  ATATATATATATATATATATATATATACACACACAATGATATCAGATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATACACACACAATGATATCAGATCAC  300

seq1  ATGTTACATGAATGTGTAAAATTCCATGAAGGCCCAGCCCTATATGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATGAATGTGTAAAATTCCATGAAGGCCCAGCCCTATATGAAAG  350

seq1  ACAATTAATGGCTTTTGAGAAAGGGAGATTGGAACTTTTCTAATGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAATGGCTTTTGAGAAAGGGAGATTGGAACTTTTCTAATGAGAAA  400

seq1  CCTCAAAAGGTTACCCAGAATCAAGTGCTCAGCTCAAACACACATGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAAGGTTACCCAGAATCAAGTGCTCAGCTCAAACACACATGTGTA  450

seq1  TGAGTATAGAAGATATTTTGAAGCGTTATAAAACTCAGAGAATTAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATAGAAGATATTTTGAAGCGTTATAAAACTCAGAGAATTAACCTT  500

seq1  TGATTGATAAATTAAACCTCAGATAAGTGAAAAATATCCTTTCAGAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATAAATTAAACCTCAGATAAGTGAAAAATATCCTTTCAGAATTA  550

seq1  ACCTATATTTGTCCTAAAGATACATATTCATTTTATATTTTACTTGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATTTGTCCTAAAGATACATATTCATTTTATATTTTACTTGGAAC  600

seq1  ATGCTTGAAAAATGTAAGACTGTAACTATCTTAATTCAAAAAAATTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGAAAAATGTAAGACTGTAACTATCTTAATTCAAAAAAATTCTAA  650

seq1  AATTTTTCCCTTCCAAAAAGTATGTTTAA-GGGGGGAGGGGGAG  693
      ||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTTTTCCCTTCCAAAAAGTATGTTTAAGGGGGGGAGGGGGAG  694