BAC Information

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BAC

Clone NameB6Ng01-228L03
Chromosome14 (Build37)
Map Location 112,106,481 - 112,107,641
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228L03.bB6Ng01-228L03.g
ACCGA042046GA042047
length1,0241,150
definitionB6Ng01-228L03.b B6Ng01-228L03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatggaaaatgttatctatatgacctcaattgacttatctaagtc
taagcgacatctagataagcttaaaagccaggtatttcttttttttttta
tttttattaggtattttcctcatttacatttccagtgctatcacaaaagt
cccccttagtctccccaccactccccaacccaccctatcccacttcttgg
cactggtgttcccctgtactgaggcatataaagtttgcacgacctccggg
cctctctttccaatgatggccaactaagccatcttctgatccatatgcag
ctagggatatgagctccagggggtactggttagttcatattgttgttcca
catatagggtagcagatctctttagctccttggatactttctctagcttg
tccattgggggccctgtgatccattcaatagctgactgtgagcatccact
tctgtgtttgctaggccccagcatagtctcagaagagacagctatatcag
gctcctttcagcaaaatattgctagtgtatgcaatggtgtctgcgtttgg
tggctgattatgggatggatccccggatatggtaggctctagatggtcca
tccttttgtctcagctctaaaatttgtctctgtaactccttccatgggtg
tactgttcccgattctaagaaggggcagagtgtccacactttggtcttca
ttcttcttgagtttcatgtgctttgtatcttgtatcttgggtattctaag
tttctgggctaatatccacttatcagtgagaacatatcatgtgagttctt
ttgtgattgggttacctcactcaggatgatgccctccaggtcaatccatt
tgcctaggaatttcataaattaattctttttaatagctgagtagtactcc
attgtgtaaatgtaccacattttctgtatcatttcctcttttgaagggca
tctgggttctttcgagcatctgggctatataaataagctgctatgaacat
agtggagcatgtttcttttttact
gaattctgtttaatagctattctctaatagctaacattctgacttattcc
tctaaaagcaataatttctgttagtattgtatttgcagaagaaatactaa
tttcatctttttttgtgccttttatgcttgttggtgttcttattttttcc
tccctcctcctttcttttccccttccatttccttttttcctatttcctcc
cccttccttccccagctctgttcccctcccttttccccttgtcatttccc
tcctggcaccctttttcttgcttctcctcttttagatacaatgtttctct
tttttctttcttattgaaactttacactgtagcttgcttttattttatca
aatattatttatgaggaggagatttctattctaggattaattggtttcac
agagtaaagaagtttagagtaaaaaaaattagtcagaatatttggcatgg
ggcaattatcttacatatacataattaacagcaaaatatgatggcaaagg
tcctcataaaaggcagggagattaaagaccaaggcattggatgagggaag
gagatgagtgacatagcaaaggaaaggtgagcttctctagaagcctcagg
aggcactcctcaaaggacttcaggagcacgtgacctttccaatggaatga
ctttaaatctatacagtctttcagaaatctgacatcccaaactgtatcaa
aataaaattgatgtgtaccatggtaagccactaagctcatgatgagtctt
cccatctacaatagaaaatgaaaatatgttagaaatatatagatatcttg
ttattaaatatcctggggttttatttaattatttgaagtatagataaact
agacagttctagaaatagttctaggcagggtactatacgttttgcaaata
gtaaaatgtaagaatggtttatattaatcatgttattctgtgtaattata
tactaagttggattatcagttaattgactgagcattgattgagcttaaaa
atattcaccagaaattaaaaccatgccaagttttattatgtttttgcaaa
taatagcatggtacttgactacattctaaaatgccttcagaaaaggaaga
cctggaaaaatactcaagtaaaaatataaatccatatgattatgaaccta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112106481_112107641
seq2: B6Ng01-228L03.g_66_1215

seq1  GAATTCTGTTTAATAGCTATTCTCTAATAGCTAACATTCTGACTTATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAATAGCTATTCTCTAATAGCTAACATTCTGACTTATTCC  50

seq1  TCTAAAAGCAATAATTTCTGTTAGTATTGTATTTGCAGAAGAAATACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGCAATAATTTCTGTTAGTATTGTATTTGCAGAAGAAATACTAA  100

seq1  TTTCATCTTTTTTTGTGCCTTTTATGCTTGTTGGTGTTCTTATTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTTTTTTTGTGCCTTTTATGCTTGTTGGTGTTCTTATTTTTTCC  150

seq1  TCCCTCCTCCTTTCTTTTCCCCTTCCATTTCCTTTTTTCCTATTTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTCCTTTCTTTTCCCCTTCCATTTCCTTTTTTCCTATTTCCTCC  200

seq1  CCCTTCCTTCCCCAGCTCTGTTCCCCTCCCTTTTCCCCTTGTCATTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCCCCAGCTCTGTTCCCCTCCCTTTTCCCCTTGTCATTTCCC  250

seq1  TCCTGGCACCCTTTTTCTTGCTTCTCCTCTTTTAGATACAATGTTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCACCCTTTTTCTTGCTTCTCCTCTTTTAGATACAATGTTTCTCT  300

seq1  TTTTTCTTTCTTATTGAAACTTTACACTGTAGCTTGCTTTTATTTTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTTATTGAAACTTTACACTGTAGCTTGCTTTTATTTTATCA  350

seq1  AATATTATTTATGAGGAGGAGATTTCTATTCTAGGATTAATTGGTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTATGAGGAGGAGATTTCTATTCTAGGATTAATTGGTTTCAC  400

seq1  AGAGTAAAGAAGTTTAGAGTAAAAAAAATTAGTCAGAATATTTGGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGAAGTTTAGAGTAAAAAAAATTAGTCAGAATATTTGGCATGG  450

seq1  GGCAATTATCTTACATATACATAATTAACAGCAAAATATGATGGCAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTATCTTACATATACATAATTAACAGCAAAATATGATGGCAAAGG  500

seq1  TCCTCATAAAAGGCAGGGAGATTAAAGACCAAGGCATTGGATGAGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATAAAAGGCAGGGAGATTAAAGACCAAGGCATTGGATGAGGGAAG  550

seq1  GAGATGAGTGACATAGCAAAGGAAAGGTGAGCTTCTCTAGAAGCCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGTGACATAGCAAAGGAAAGGTGAGCTTCTCTAGAAGCCTCAGG  600

seq1  AGGCACTCCTCAAAGGACTTCAGGAGCACGTGACCTTTCCAATGGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCCTCAAAGGACTTCAGGAGCACGTGACCTTTCCAATGGAATGA  650

seq1  CTTT-AATCTATACAGTCTTTCAGAAATCTGACATCCCAAACTGTATCAA  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATCTATACAGTCTTTCAGAAATCTGACATCCCAAACTGTATCAA  700

seq1  AATAAAATTGATGTGTACCATGGTAAGCCACTAAGCTCATGATGAGTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTGATGTGTACCATGGTAAGCCACTAAGCTCATGATGAGTCTT  750

seq1  CCCATCTACAATAGAAAATGAAAATATGTTAGAAATATATAGATATCTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTACAATAGAAAATGAAAATATGTTAGAAATATATAGATATCTTG  800

seq1  TTATTAAATATCCTGGGGTTTTATTTAATTAATTTGAAGTATAGATAAAC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATTAAATATCCTGGGGTTTTATTTAATT-ATTTGAAGTATAGATAAAC  849

seq1  TAGACAGTTCTAGAAATAGTTCTAGGCAGGGTACTATACGTTTTGCAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTTCTAGAAATAGTTCTAGGCAGGGTACTATACGTTTTGCAAAT  899

seq1  AGTAAAATGTAAGAATGGTTTATATTAATCATGTTATTCTGTGTAATTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATGTAAGAATGGTTTATATTAATCATGTTATTCTGTGTAATTAT  949

seq1  ATACTAAGTTGGATTATCAGTTAATTGACTGAAGCATTGATTGAGCTT-A  998
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  ATACTAAGTTGGATTATCAGTTAATTGACTG-AGCATTGATTGAGCTTAA  998

seq1  AAATATTCACCAGAAAATAAAACCATGCCAAGTTTTTATATATGTTTTTG  1048
      |||||||||||||||| ||||||||||||||| |||||| ||||||||||
seq2  AAATATTCACCAGAAATTAAAACCATGCCAAG-TTTTAT-TATGTTTTTG  1046

seq1  CAAATAAATAGCATGGTACTTGACTACATTCTAAAATGGCTTTCAGAAAA  1098
      ||||| ||||||||||||||||||||||||||||||| || |||||||||
seq2  CAAAT-AATAGCATGGTACTTGACTACATTCTAAAAT-GCCTTCAGAAAA  1094

seq1  AGAAGACCTTGAAAAATACTTAAAGTAAAAAATATTAATATCCAATATGA  1148
       |||||||| ||||||||| | |||| |||||||| |||   | ||||||
seq2  GGAAGACCTGGAAAAATAC-TCAAGT-AAAAATATAAAT---CCATATGA  1139

seq1  TTTTATGAACCTA  1161
        |||||||||||
seq2  --TTATGAACCTA  1150