BAC Information

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BAC

Clone NameB6Ng01-229C05
Chromosome14 (Build37)
Map Location 5,380,495 - 5,557,497
singlet/doubletdoublet
Overlap geneLOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515
Upstream geneLOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138
Downstream geneLOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229C05.bB6Ng01-229C05.g
ACCGA042368GA042369
length1,1781,190
definitionB6Ng01-229C05.b B6Ng01-229C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,380,495 - 5,381,668)(5,556,221 - 5,557,497)
sequence
gaattcaacacaccactttcaccaatggatggatcgtggaaacagaaaca
aaacagggacagagtgaaactaacagaagttatgaaacaaatggattcca
ttggctttccactcctacaagtcccatgatccctgcaagggccctgatcc
ccagaaagcctgagaagagtccacaatatacatagcagaaccaaacaaag
acaagtcaaatcaagataccacccatattccagaggactcaacaaacttc
tgaaaaccctgacaccaagagtttttcctatacatcacacaagaggaaat
gttcctcatggttgattataggtctgtggtaccataaaaccttcagcagg
gagaggacttaccccctctgaaagttgtagaagacccaaaaggtgtaaac
tctttccattttcatcgggaatcctatatcttttaatctgtggtcagaaa
cctagaggttcagggtgtctggatattcccagcaaggtggaaaagttttc
aatgtacaggatcttgaatttggaagaataaagattggagggtcttggac
actcttcacacttaggacgactgagtccaagaggtacaaatccaagatcc
ttgcttcaaggcagggttcctggataaaaaacagatagcatagaaccaga
gcccttgcttttgttcaaagtcctaaaaggatagaagcattccttgccta
gttctgggggtctcagttgtgtcactgactcacctgtaggaatagttatc
ttctatcagttccttggagtactgcatggaaccaattatggactggatca
ttttattcatatccaacattgtcttctcatgttgtgatttaatgatgtcg
aattcagtgttcatcctgtgttagggcatgacccaagaagcaaataatct
gctgaattaaaggattcaataatcatgtgccaacaggctatgtcatggac
taccaagccaagtgcatgccacatcctggctcattcaaactgggtcccct
tggtgctaattaaacttactatcctgggtagaggacagcagagcagggac
aaatggagctagctacccttccagagagctaacggacagcatggaaagaa
tgaacttacttctatgaacaatttcaacttaactgtgtgccacaaggcat
ggggttcagatagaatctgtaatgactt
gaattcaccatgacctcctcattctgggtaattctccctgaaatgtggat
tatatagtttggccaaattcataggactaggccaaagatcaagagtcctt
gttctgaaagaaaaaaaaaaaggagaaatgtcctcatagtttctgtatac
ccacacctgtgtcataaactactgagagtttagagaccttgtctgtccct
ccaggcctatgcgggagctcaaacaactagaactctaaccgcctggacac
ccagcctctggagacctttggacaagatagcaagattaataagcttagat
gatcctagtacataggaggtagaaggtaacatactgtgagcttggatagt
tcagaatccatcctggattcaggtgacccttgaagcctgtgttcttggga
ctctttgctcttggggccaggcccaaccaaagatcaaatccttactatga
aaaattgaaagtggagactaagcaggtaatgttggacctgcagagcttac
agaatgtgtacactgaggcctcagagacatttgaattcctggcaaagaca
aaggctgctataggtaactgtctgtcttgcttgggagcacatgagctgta
gaattgccatctctgattttgatcctgcacaggagactctcgagctctgg
ttcttgctttctgccacttcacacaggagcctttagatttttctgttgta
aacctgtgggttgaaacactttttggggtaaaaaaaaaggtcaaaggacc
ctttcacagaggttgtgtatcagacaatcctttatctcagacacttctat
tatggcttataacagtacaaaaattatagtacccaagtagcaatgaaaat
aatcttaagtttgggaggtcactgcattaaagcatccacagcatttggta
aattgagaaaccctggtcttgacagaagaactattgtatcatgtgaggtc
ttcttgacccccggggctgagtcagatctatagagagctagttaccagca
gacccatgtatagcagtatccccttgtttctctttcattcatagtgcttt
gccatctcgtgatgtttctcattagatgacagtaggaccaactgtagtca
cttctttctttaggacatgaatccctcttaagttggaacttggagtgaca
tgaagtgtttctggaattgcctgtttcccataatttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5380495_5381668
seq2: B6Ng01-229C05.b_46_1223

seq1  GAATTCAACACACCACTTTCACCAATGGATGGATCGTGGAAACAGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACACCACTTTCACCAATGGATGGATCGTGGAAACAGAAACA  50

seq1  AAACAGGGACAGAGTGAAACTAACAGAAGTTATGAAACAAATGGATTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGACAGAGTGAAACTAACAGAAGTTATGAAACAAATGGATTCCA  100

seq1  TTGGCTTTCCACTCCTACAAGTCCCATGATCCCTGCAAGGGCCCTGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCCACTCCTACAAGTCCCATGATCCCTGCAAGGGCCCTGATCC  150

seq1  CCAGAAAGCCTGAGAAGAGTCCACAATATACATAGCAGAACCAAACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCCTGAGAAGAGTCCACAATATACATAGCAGAACCAAACAAAG  200

seq1  ACAAGTCAAATCAAGATACCACCCATATTCCAGAGGACTCAACAAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAAATCAAGATACCACCCATATTCCAGAGGACTCAACAAACTTC  250

seq1  TGAAAACCCTGACACCAAGAGTTTTTCCTATACATCACACAAGAGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCCTGACACCAAGAGTTTTTCCTATACATCACACAAGAGGAAAT  300

seq1  GTTCCTCATGGTTGATTATAGGTCTGTGGTACCATAAAACCTTCAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCATGGTTGATTATAGGTCTGTGGTACCATAAAACCTTCAGCAGG  350

seq1  GAGAGGACTTACCCCCTCTGAAAGTTGTAGAAGACCCAAAAGGTGTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACTTACCCCCTCTGAAAGTTGTAGAAGACCCAAAAGGTGTAAAC  400

seq1  TCTTTCCATTTTCATCGGGAATCCTATATCTTTTAATCTGTGGTCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCATTTTCATCGGGAATCCTATATCTTTTAATCTGTGGTCAGAAA  450

seq1  CCTAGAGGTTCAGGGTGTCTGGATATTCCCAGCAAGGTGGAAAAGTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGTTCAGGGTGTCTGGATATTCCCAGCAAGGTGGAAAAGTTTTC  500

seq1  AATGTACAGGATCTTGAATTTGGAAGAATAAAGATTGGAGGGTCTTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAGGATCTTGAATTTGGAAGAATAAAGATTGGAGGGTCTTGGAC  550

seq1  ACTCTTCACACTTAGGACGACTGAGTCCAAGAGGTACAAATCCAAGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCACACTTAGGACGACTGAGTCCAAGAGGTACAAATCCAAGATCC  600

seq1  TTGCTTCAAGGCAGGGTTCCTGGATAAAAAACAGATAGCATAGAACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAAGGCAGGGTTCCTGGATAAAAAACAGATAGCATAGAACCAGA  650

seq1  GCCCTTGCTTTTGTTCAAAGTCCTAAAAGGATAGAAGCATTCCTTGCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCTTTTGTTCAAAGTCCTAAAAGGATAGAAGCATTCCTTGCCTA  700

seq1  GTTCTGGGGGTCTCAGTTGTGTCACTGACTCACCTGTAGGAATAGTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGGGTCTCAGTTGTGTCACTGACTCACCTGTAGGAATAGTTATC  750

seq1  TTCTATCAGTTCCTTGGAGTACTGCATGGAACCAATTATGGACTGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCAGTTCCTTGGAGTACTGCATGGAACCAATTATGGACTGGATCA  800

seq1  TTTTATTCATATCCAACATTGTCTTCTCATGTTGTGATTTAATGATGTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCATATCCAACATTGTCTTCTCATGTTGTGATTTAATGATGTCG  850

seq1  AATTCAGTGTTCATCCTGTGTTAGGGCATGACCCAAGAAGCAAATAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTGTTCATCCTGTGTTAGGGCATGACCCAAGAAGCAAATAATCT  900

seq1  GCTGAATT-AAGGATTCAATAATCATGTGCCAACAGGCTATGTCATGGAC  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTAAAGGATTCAATAATCATGTGCCAACAGGCTATGTCATGGAC  950

seq1  TACCAAGCCAAGTGCATGCCACATCCTGGCTCATTCAAACTGGGTCCCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCCAAGTGCATGCCACATCCTGGCTCATTCAAACTGGGTCCCCT  1000

seq1  TGGTGCTAATTAAACTTACTATCCTGGGTAGAGGACAGCAGAGCCAGGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TGGTGCTAATTAAACTTACTATCCTGGGTAGAGGACAGCAGAG-CAGGG-  1048

seq1  ACCAAATGGAGCTAGCTAACCTTCAAGAG-CTTACCGGACAAGCAT-GAA  1097
        |||||||||||||||| ||||| ||||   || ||||| ||||| |||
seq2  -ACAAATGGAGCTAGCTACCCTTCCAGAGAGCTAACGGAC-AGCATGGAA  1096

seq1  AGAATAGAC-TACTTCTATGACAATTTTCCACTAAAC--TGTGCCAC-AG  1143
      |||||  || |||||||||||  | |||| ||| |||  |||||||| ||
seq2  AGAATGAACTTACTTCTATGAACAATTTCAACTTAACTGTGTGCCACAAG  1146

seq1  GCAT-GGGTCCAG-TAGATATCTGTAATGACTT  1174
      |||| |||| ||| |||| ||||||||||||||
seq2  GCATGGGGTTCAGATAGA-ATCTGTAATGACTT  1178

seq1: chr14_5556221_5557497
seq2: B6Ng01-229C05.g_1_1256 (reverse)

seq1  GCAAAAATTA--GAGAACAGCAAATTCCAGAAACAC-TCATGCTACTTCC  47
      ||||||||||  |  |||||  |||||||||||||| |||||  ||| | 
seq2  GCAAAAATTATGGGAAACAGGCAATTCCAGAAACACTTCATGTCACTCC-  49

seq1  AAAAGTCCCAACACTAAGAGGGATCCATGTTTCCTAAAAAGAAGAAGTGG  97
        |||| |||||  |||||||||| ||||  ||||||| | ||||||| |
seq2  --AAGTTCCAAC-TTAAGAGGGATTCATG--TCCTAAAGA-AAGAAGT-G  92

seq1  ACTACAGTTGTCCCTACCTGTCCATCCTAATGGAGAAACATCACGAAGGA  147
      ||||||||||  |||| |||| ||| ||||| ||||||||||||||  ||
seq2  ACTACAGTTGGTCCTA-CTGT-CAT-CTAAT-GAGAAACATCACGA--GA  136

seq1  ATGGGCAAAGGCACTATGAATTGGAAAGGAGAAACAAGGGGAATACTTGC  197
         |||||| |||||||||||  |||| ||||||||||||| |||| |||
seq2  --TGGCAAA-GCACTATGAAT--GAAA-GAGAAACAAGGGG-ATAC-TGC  178

seq1  TATACATGGGTCTGCTGGTAACTAGCTCTCTATAGATCCTGACTCAGCCC  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATACATGGGTCTGCTGGTAACTAGCTCTCTATAGAT-CTGACTCAGCCC  227

seq1  CGGGGGTCAAGAAGACCTCACATGATACAAATAGTTCTTCTGTCAAGACC  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGGGGGTCAAGAAGACCTCACATGATAC-AATAGTTCTTCTGTCAAGACC  276

seq1  AGGGTTTCTCAATTTACCAAATGCTGTGGATGCTTTAATGCAGTGACCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCAATTTACCAAATGCTGTGGATGCTTTAATGCAGTGACCTC  326

seq1  CCAAACTTAAGATTATTTTCATTGCTACTTGGGTACTATAATTTTTGTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTAAGATTATTTTCATTGCTACTTGGGTACTATAATTTTTGTAC  376

seq1  TGTTATAAGCCATAATAGAAGTGTCTGAGATAAAGGATTGTCTGATACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAGCCATAATAGAAGTGTCTGAGATAAAGGATTGTCTGATACAC  426

seq1  AACCTCTGTGAAAGGGTCCTTTGACCTTTTTTTTTACCCCAAAAAGTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGTGAAAGGGTCCTTTGACCTTTTTTTTTACCCCAAAAAGTGTT  476

seq1  TCAACCCACAGGTTTACAACAGAAAAATCTAAAGGCTCCTGTGTGAAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCACAGGTTTACAACAGAAAAATCTAAAGGCTCCTGTGTGAAGTG  526

seq1  GCAGAAAGCAAGAACCAGAGCTCGAGAGTCTCCTGTGCAGGATCAAAATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGCAAGAACCAGAGCTCGAGAGTCTCCTGTGCAGGATCAAAATC  576

seq1  AGAGATGGCAATTCTACAGCTCATGTGCTCCCAAGCAAGACAGACAGTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCAATTCTACAGCTCATGTGCTCCCAAGCAAGACAGACAGTTA  626

seq1  CCTATAGCAGCCTTTGTCTTTGCCAGGAATTCAAATGTCTCTGAGGCCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCAGCCTTTGTCTTTGCCAGGAATTCAAATGTCTCTGAGGCCTC  676

seq1  AGTGTACACATTCTGTAAGCTCTGCAGGTCCAACATTACCTGCTTAGTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACACATTCTGTAAGCTCTGCAGGTCCAACATTACCTGCTTAGTCT  726

seq1  CCACTTTCAATTTTTCATAGTAAGGATTTGATCTTTGGTTGGGCCTGGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCAATTTTTCATAGTAAGGATTTGATCTTTGGTTGGGCCTGGCC  776

seq1  CCAAGAGCAAAGAGTCCCAAGAACACAGGCTTCAAGGGTCACCTGAATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCAAAGAGTCCCAAGAACACAGGCTTCAAGGGTCACCTGAATCC  826

seq1  AGGATGGATTCTGAACTATCCAAGCTCACAGTATGTTACCTTCTACCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGATTCTGAACTATCCAAGCTCACAGTATGTTACCTTCTACCTCC  876

seq1  TATGTACTAGGATCATCTAAGCTTATTAATCTTGCTATCTTGTCCAAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTAGGATCATCTAAGCTTATTAATCTTGCTATCTTGTCCAAAGG  926

seq1  TCTCCAGAGGCTGGGTGTCCAGGCGGTTAGAGTTCTAGTTGTTTGAGCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGGCTGGGTGTCCAGGCGGTTAGAGTTCTAGTTGTTTGAGCTC  976

seq1  CCGCATAGGCCTGGAGGGACAGACAAGGTCTCTAAACTCTCAGTAGTTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATAGGCCTGGAGGGACAGACAAGGTCTCTAAACTCTCAGTAGTTTA  1026

seq1  TGACACAGGTGTGGGTATACAGAAACTATGAGGACATTTCTCCTTTTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGGTGTGGGTATACAGAAACTATGAGGACATTTCTCCTTTTTTT  1076

seq1  TTTTCTTTCAGAACAAGGACTCTTGATCTTTGGCCTAGTCCTATGAATTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCAGAACAAGGACTCTTGATCTTTGGCCTAGTCCTATGAATTT  1126

seq1  GGCCAAACTATATAATCCACATTTCAGGGAGAATTACCCAGAATGAGGAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACTATATAATCCACATTTCAGGGAGAATTACCCAGAATGAGGAG  1176

seq1  GTCATGGTGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1247
      ||||||||||||||                                    
seq2  GTCATGGTGAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1226

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1277
                                    
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN  1256