BAC Information

Click to search

BAC

Clone NameB6Ng01-229C24
Chromosome14 (Build37)
Map Location 37,545,275 - 37,706,004
singlet/doubletdoublet
Overlap geneGcap14
Upstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneLOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229C24.bB6Ng01-229C24.g
ACCGA042406GA042407
length1,1631,179
definitionB6Ng01-229C24.b B6Ng01-229C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,704,830 - 37,706,004)(37,545,275 - 37,546,447)
sequence
gaattccaataataattaaacaaaaagacagcatgaatttgagaaggagt
gggggcatataggaaaagttaggaaaagggaagtgatgtgattatatttc
attagaaaattatgaaataaattattcgcatgaaaaaacataggacaaga
atgaaattttattaccctgtgtacttccagtattgttttaaaactgttta
agcttaatatttagatataggaagtcagtttgcacattaaattcaaaatt
atccggatgtattctaagttaccagtcagtcatttgtttgagcaccttaa
cgtaaataattacacaaattaatcctcagtctccatcagacagcaaagaa
ggtctaaagaatctgtgtcctgtcacacaatcagctgccctgggttacta
ttaaaacaagtgtgggaagaatatgtagactgtcatgtcctatggaaagg
cttgtgccagttaaaactgttcacagttgtacctaattctacttctctcc
actggtttaataattgagtattgcatatgagagagttaagggaaaatgat
ctggcatatatttcaaaatgttctgttggagtaatttctaacatataata
atcttaattcataaccttgcatataggagagacatatacaacatcaattc
aagagtggaataatatgtgttgtcattttcctgcttgtgcagtagactca
tgatgtcaaggtttcccagtatatttttataaaatctgaagcctaccacc
gatgcatcccaaaaggcatgggtttttaaacattaatatttataatttta
ctagcaagaaacttatttcctttttcttaggcctgggagataggatgaca
gagtaactgaaacaacagtatatctcacagattctcttttgagtaatctc
ccatgtgattttctttgagaccaatgggtttcctgatttggaacctggac
aggatatggtaacatttctgtcctgtactatcctgatttaaactcagatt
gcccttgttcctcttcactgggagtgcatatacaactcagagaatattta
tgtgtatatttggattatattttgcagaatagtacctaaggaaatgaaga
ctttatttcggttgcccatgtccttattattattatttaacgttgcatta
attgccactcgaa
gaattcatagtagatgaagagaagagcctttcagtggggtcataggtttc
tgtccataaatatcaaccattggcactcacatcattgagcactgtagata
ttcattcccactgagatctggaagggaggcaggtggataagggactatga
aagttaaatccaaggattctagaagcctatgccaatacaaaaacagaaaa
aaaatagatcattgtaaagtagatcaagttagtaatattcacagagaata
tgactctatgattatctttaaaaattaattaaaacattatgggggaagaa
ctaaggttataaattttaccgcaaaacatgtactctttgaccctaacaga
catttccatgtgatctgtcatctagtcacaatcactgagcctaaggacca
tttccttaaacatcaagtaaaccacatagagacaggaactactgctttta
atagttagcttaggctacctggtaatgggcccaggaaccaaactgcctgg
gctctggacctaaacatcctgcattcatgtcccagctcctcattcgctgt
cctccatagccgtaggcttattatttaaattttatgcttcactttcatcc
aatgttagcaatcatgcataatgtatatgtctgtgataacaactaaacag
ctttctatttgtaatgttctcagaaaagtgacctgcagataattcacagt
attaatagtcatttgtactggtcagtagtctccagacaaacagaaccaac
aggggatacatagaaaaagatttattcttggaaattgcctcatatggtta
cagaggttaagaaagccaatcagctgcagtctgcaaggtaaggagaccca
gggaagccagaggcatgatgctacatgagtttagaggcccaagaacactg
catctgatggtataaatactggcctggagatcagagaaaatgatctgaga
tgtcccagctcaacaaaatttcaacgaactcctccctcctctgccttttt
attctaaagaagactcagtagtttattatgggtataccacccaacacggg
ggaggaaacctggactaggtgaatttcactgatctaatgcacctcaccca
gattactctcacccagaaaacaccagaaatgagtgttttattacaatgtc
cacacgcccagctaagcgtgatccacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37704830_37706004
seq2: B6Ng01-229C24.b_43_1205 (reverse)

seq1  TTCGAGTGGCAAATATAAATACAACACTAAATAAATATATAAATAAGACC  50
      |||||||||||   || ||| ||||  ||||||   |||  ||||||  |
seq2  TTCGAGTGGCA---ATTAATGCAACGTTAAATA---ATAATAATAAGGAC  44

seq1  ATTTGGCAA-CGAAATAAATTCTTTAATTTCCTTTGAGTAACTA-TCTGC  98
      | | ||||| ||||||||| || || ||||||||  ||  |||| |||||
seq2  A-TGGGCAACCGAAATAAAGTC-TTCATTTCCTT--AGGTACTATTCTGC  90

seq1  -AAATAT-ATCCAAATATACACATAAATA-TCTCTGAGTTGTAATATGGC  145
       |||||| ||||||||||||||||||||| |||||||||||| |||||  
seq2  AAAATATAATCCAAATATACACATAAATATTCTCTGAGTTGT-ATATG--  137

seq1  AACTCCCAGTGAAGAGGAACAAGGCAAATCTGAGTTTAAAATCAGGATAG  195
       |||||||||||||||||||||||  ||||||||||| ||||||||||||
seq2  CACTCCCAGTGAAGAGGAACAAGGGCAATCTGAGTTT-AAATCAGGATAG  186

seq1  TACAGGACAGAAATGTTAACCAATATCCTGTCCAGGTTCCAAATCAGGAA  245
      ||||||||||||||||||  | ||||||||||||||||||||||||||||
seq2  TACAGGACAGAAATGTTA--CCATATCCTGTCCAGGTTCCAAATCAGGAA  234

seq1  A-CCATTGGTCTCAAAAGAAAATCACATGGGAGATTACTCAAAAGAGAAA  294
      | ||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  ACCCATTGGTCTC-AAAGAAAATCACATGGGAGATTACTCAAAAGAG-AA  282

seq1  TCTGTGAGATATACTGTTGTTTCAGTTACTCTGTCATCCTATCTCCCAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGATATACTGTTGTTTCAGTTACTCTGTCATCCTATCTCCCAGG  332

seq1  CCTAAGAAAAAGGAAATAAGTTTCTTGCTAGTAAAATTATAAATATTAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAAAAGGAAATAAGTTTCTTGCTAGTAAAATTATAAATATTAAT  382

seq1  GTTTAAAAACCCATGCCTTTTGGGATGCATCGGTGGTAGGCTTCAGATTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAACCCATGCCTTTTGGGATGCATCGGTGGTAGGCTTCAGATTT  432

seq1  TATAAAAATATACTGGGAAACCTTGACATCATGAGTCTACTGCACAAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATATACTGGGAAACCTTGACATCATGAGTCTACTGCACAAGCA  482

seq1  GGAAAATGACAACACATATTATTCCACTCTTGAATTGATGTTGTATATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGACAACACATATTATTCCACTCTTGAATTGATGTTGTATATGT  532

seq1  CTCTCCTATATGCAAGGTTATGAATTAAGATTATTATATGTTAGAAATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTATATGCAAGGTTATGAATTAAGATTATTATATGTTAGAAATTA  582

seq1  CTCCAACAGAACATTTTGAAATATATGCCAGATCATTTTCCCTTAACTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAGAACATTTTGAAATATATGCCAGATCATTTTCCCTTAACTCT  632

seq1  CTCATATGCAATACTCAATTATTAAACCAGTGGAGAGAAGTAGAATTAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGCAATACTCAATTATTAAACCAGTGGAGAGAAGTAGAATTAGG  682

seq1  TACAACTGTGAACAGTTTTAACTGGCACAAGCCTTTCCATAGGACATGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGTGAACAGTTTTAACTGGCACAAGCCTTTCCATAGGACATGAC  732

seq1  AGTCTACATATTCTTCCCACACTTGTTTTAATAGTAACCCAGGGCAGCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACATATTCTTCCCACACTTGTTTTAATAGTAACCCAGGGCAGCTG  782

seq1  ATTGTGTGACAGGACACAGATTCTTTAGACCTTCTTTGCTGTCTGATGGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGACAGGACACAGATTCTTTAGACCTTCTTTGCTGTCTGATGGA  832

seq1  GACTGAGGATTAATTTGTGTAATTATTTACGTTAAGGTGCTCAAACAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGATTAATTTGTGTAATTATTTACGTTAAGGTGCTCAAACAAAT  882

seq1  GACTGACTGGTAACTTAGAATACATCCGGATAATTTTGAATTTAATGTGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTGGTAACTTAGAATACATCCGGATAATTTTGAATTTAATGTGC  932

seq1  AAACTGACTTCCTATATCTAAATATTAAGCTTAAACAGTTTTAAAACAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTTCCTATATCTAAATATTAAGCTTAAACAGTTTTAAAACAAT  982

seq1  ACTGGAAGTACACAGGGTAATAAAATTTCATTCTTGTCCTATGTTTTTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGTACACAGGGTAATAAAATTTCATTCTTGTCCTATGTTTTTTC  1032

seq1  ATGCGAATAATTTATTTCATAATTTTCTAATGAAATATAATCACATCACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGAATAATTTATTTCATAATTTTCTAATGAAATATAATCACATCACT  1082

seq1  TCCCTTTTCCTAACTTTTCCTATATGCCCCCACTCCTTCTCAAATTCATG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCCTAACTTTTCCTATATGCCCCCACTCCTTCTCAAATTCATG  1132

seq1  CTGTCTTTTTGTTTAATTATTATTGGAATTC  1175
      |||||||||||||||||||||||||||||||
seq2  CTGTCTTTTTGTTTAATTATTATTGGAATTC  1163

seq1: chr14_37545275_37546447
seq2: B6Ng01-229C24.g_65_1243

seq1  GAATTCATAGTAGATGAAGAGAAGAGCCTTTCAGTGGGGTCATAGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTAGATGAAGAGAAGAGCCTTTCAGTGGGGTCATAGGTTTC  50

seq1  TGTCCATAAATATCAACCATTGGCACTCACATCATTGAGCACTGTAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATAAATATCAACCATTGGCACTCACATCATTGAGCACTGTAGATA  100

seq1  TTCATTCCCACTGAGATCTGGAAGGGAGGCAGGTGGATAAGGGACTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCCACTGAGATCTGGAAGGGAGGCAGGTGGATAAGGGACTATGA  150

seq1  AAGTTAAATCCAAGGATTCTAGAAGCCTATGCCAATACAAAAACAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAATCCAAGGATTCTAGAAGCCTATGCCAATACAAAAACAGAAAA  200

seq1  AAAATAGATCATTGTAAAGTAGATCAAGTTAGTAATATTCACAGAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATCATTGTAAAGTAGATCAAGTTAGTAATATTCACAGAGAATA  250

seq1  TGACTCTATGATTATCTTTAAAAATTAATTAAAACATTATGGGGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTATGATTATCTTTAAAAATTAATTAAAACATTATGGGGGAAGAA  300

seq1  CTAAGGTTATAAATTTTACCGCAAAACATGTACTCTTTGACCCTAACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTATAAATTTTACCGCAAAACATGTACTCTTTGACCCTAACAGA  350

seq1  CATTTCCATGTGATCTGTCATCTAGTCACAATCACTGAGCCTAAGGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATGTGATCTGTCATCTAGTCACAATCACTGAGCCTAAGGACCA  400

seq1  TTTCCTTAAACATCAAGTAAACCACATAGAGACAGGAACTACTGCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAACATCAAGTAAACCACATAGAGACAGGAACTACTGCTTTTA  450

seq1  ATAGTTAGCTTAGGCTACCTGGTAATGGGCCCAGGAACCAAACTGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGCTTAGGCTACCTGGTAATGGGCCCAGGAACCAAACTGCCTGG  500

seq1  GCTCTGGACCTAAACATCCTGCATTCATGTCCCAGCTCCTCATTCGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGACCTAAACATCCTGCATTCATGTCCCAGCTCCTCATTCGCTGT  550

seq1  CCTCCATAGCCGTAGGCTTATTATTTAAATTTTATGCTTCACTTTCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGCCGTAGGCTTATTATTTAAATTTTATGCTTCACTTTCATCC  600

seq1  AATGTTAGCAATCATGCATAATGTATATGTCTGTGATAACAACTAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGCAATCATGCATAATGTATATGTCTGTGATAACAACTAAACAG  650

seq1  CTTTCTATTTGTAATGTTCTCAGAAAAGTGACCTGCAGATAATTCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTTGTAATGTTCTCAGAAAAGTGACCTGCAGATAATTCACAGT  700

seq1  ATTAATAGTCATTTGTACTGGTCAGTAGTCTCCAGACAAACAGAACCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGTCATTTGTACTGGTCAGTAGTCTCCAGACAAACAGAACCAAC  750

seq1  AGGGGATACATAGAAAAAGATTTATTCTTGGAAATTGCCTCATATGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATACATAGAAAAAGATTTATTCTTGGAAATTGCCTCATATGGTTA  800

seq1  CAGAGGTTAAGAAAGCCAATCAGCTGCAGTCTGCAAGGTAAGGAGACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTTAAGAAAGCCAATCAGCTGCAGTCTGCAAGGTAAGGAGACCCA  850

seq1  GGGAAGCCAGAGGCATGATGCTACATGAGTTTAGAGGCCCAAGAACACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGAGGCATGATGCTACATGAGTTTAGAGGCCCAAGAACACTG  900

seq1  CATCTGATGGTATAAATACTGGCCTGGAGATCAGAGAAAAATGATCTGAG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATCTGATGGTATAAATACTGGCCTGGAGATCAGAG-AAAATGATCTGAG  949

seq1  ATGTCCCAGCTCAACAAAATTTCAACGAACTCCTCCCTCCTCTGCC-TTT  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTCCCAGCTCAACAAAATTTCAACGAACTCCTCCCTCCTCTGCCTTTT  999

seq1  TATTCTAAAGAAGACCTCAGTAGTTTA-TAT-GGTATA-CACCC-ACACG  1045
      |||||||||||||| |||||||||||| ||| |||||| ||||| |||||
seq2  TATTCTAAAGAAGA-CTCAGTAGTTTATTATGGGTATACCACCCAACACG  1048

seq1  GGGAGGAAAACCTGGACTA-GTGAA-TTCACTGATTCTAATGCCAACCTC  1093
      |||  | |||||||||||| ||||| |||||||| ||||||||  |||||
seq2  GGGGAGGAAACCTGGACTAGGTGAATTTCACTGA-TCTAATGC--ACCTC  1095

seq1  ACCCAGATTACTCTCACCCAGAAACACCCAGAAATGA-TGTTTTATTACA  1142
      ||||||||||||||||||||||||   |||||||||| ||||||||||||
seq2  ACCCAGATTACTCTCACCCAGAAAACACCAGAAATGAGTGTTTTATTACA  1145

seq1  ATGT-CACACGGCCAG-TAAGC-TGATCCACAAA  1173
      |||| |||||| |||| ||||| |||||||||||
seq2  ATGTCCACACGCCCAGCTAAGCGTGATCCACAAA  1179