BAC Information

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BAC

Clone NameB6Ng01-229D12
Chromosome14 (Build37)
Map Location 44,494,956 - 44,647,185
singlet/doubletdoublet
Overlap geneEar10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1
Upstream geneEG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3
Downstream geneEar2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229D12.bB6Ng01-229D12.g
ACCGA042429GA042430
length1,1611,084
definitionB6Ng01-229D12.b B6Ng01-229D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,646,024 - 44,647,185)(44,494,956 - 44,496,046)
sequence
gaattccatgccccatgtgtcatagatattactggcttggagaagagaca
cacaaaaattcctggaaagtaggatggctttcagaaggctaaacatttta
ataaatactttctaaaaattggtagttgttttatacgaattaaaattact
gacaaagatacaatactcaggcctacggatgtggctcaatgctaggctgt
gtatcatatatgaggtcctgggtctgagccctggaaaacacgcacacaca
gacactttttccttccatcttaataatttatagattttaaaaaaataccc
atttctgtttcaatatgtgccacgatgggcaaaagcattttaaaaacagc
cctgaatttttgtcagggatatgagctgattctaaatcccctgagttgtt
gggcgaggtgccagcgacttccaggaaaagtcctgactgctgagagtctc
tgtctggtccctggcactctaacattgctctaaaaaaggaatctgctgtg
tttaagcaagttagtgtgtcagactagtggattttgaggggaattttaga
gttaaacacacagtgacactgtcaagggagtggacggtagacactggtgg
ttgaggtgttctgctggaagttgctttctgggtggtttagagaaaccata
atgagagactgcattgggtgagttggtaaaaattaatgtggaatttctgc
aaattagaaacaagtaacccctttcctggccacataggcctgagactttt
caaagcctaaatagcaagtgactttttaacatgaaaagccccctgtgtag
tgttcatggtgcgcaggcttgttttacccagagacccttcaggaagattt
atttcggtgagactggaccaaggtcaccccatcatcaatttcttcccgtt
ggtaccttgtaccatcaataaaggttataataaaattgccctgcaattcc
agtgttgctagatttggctccaaaaccagtaaagaatccattaacttact
tagagccacagacgtttaaagctggaaccccctcttattttatggatggt
taagcatagacttaaagagaaaagagtaactaccagaagaatatatggag
agtctgctgtgaagccagaccatatgattcaagttaagaatatgatctct
tgttcagttgt
gaattcagtcctgatattttttgtaccaagtctgtttgctctgtcataaa
acacgaaactgtttagagtgaatcatcaaatttcagataaggccttgtgt
ctcagcaataaaccattcgagaaattgaagacaaagccatctgtgattgc
tgactgtgcaagggcaagacaaaaaaatctcccagatcaaggaatggtgg
catgtaaggaagaagatgacaggcaatgtgaggggaactttgcctggaac
acagacctccaactctttgagagtgtaattcactcttcaaattaaagaga
gtaagcagcaatacctaatgatacacattgtcgtcatttgctatgaagaa
agcagaggaaaacaagaaatagcaagttggtgagcagcttccaaggcgag
ctgctctgactaccacaccttcctctgatctgtaagagtcaacccctgca
tgcttcaacactgcctgattcttctccttctcctgtgcactgttagtaat
gctgccttctaggagaaggagacctgcctcccttcacctcaaggtgactg
tgctttcaatgcctttcgcctttcctcacagctacacactcaaggccata
atggacaaatgggaaacaattgccaccctttactgaccacttacatcagg
ggtggtcctgtgataagaccttgattaagtttttaaaaatctacttctta
taatatttctacaaaaaggtgctgctgtagttcggtagcttatatggaat
tccactatgagaggctaaggaatctctccaactacacgctgtactagtat
tctttccattattgtgaaaaaatgttgaaactaatccacttaaaaaagag
gaaagggtttgttttgatccattactttgggtacctatggaggggtgtta
aattaatgcaggagagcatggcagagcagttactcacatcatggtattag
gaacaagaagaaccaagagctgagtcattttaggactccctggtgtccat
cccttcagtgatctcttgtttgtctgagtcaccctgctccagcagaaagc
tgtgcaatggcctggagcatgtgactggaaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44646024_44647185
seq2: B6Ng01-229D12.b_44_1204 (reverse)

seq1  ACAACTGA--CAGAGATCTGTATTCTTTACCTTGAATCATA-GTGCTGGC  47
      ||||||||   |||||||  ||||| ||| ||||||||||| |  |||||
seq2  ACAACTGAACAAGAGATC-ATATTC-TTAACTTGAATCATATGGTCTGGC  48

seq1  TTCACAGCAGACTCTCAATATCT--CTCTGGTAGTTTCCTTCCTTTTTCT  95
      |||||||||||||||| |||| |   |||||||||| |  ||  ||||||
seq2  TTCACAGCAGACTCTCCATATATTCTTCTGGTAGTTAC--TC--TTTTCT  94

seq1  CTTTAGGTCTATGCTTTACCATCCAT-AAATAAGA-GGGGTTCCAGCTTT  143
      ||||| |||||||||| ||||||||| |||||||| ||||||||||||||
seq2  CTTTAAGTCTATGCTTAACCATCCATAAAATAAGAGGGGGTTCCAGCTTT  144

seq1  AAACGTCTGTGGCTCTTAGTAAGTTAATGGATTCTTTACTGGTTTTGGGA  193
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AAACGTCTGTGGCTCTAAGTAAGTTAATGGATTCTTTACTGGTTTT-GGA  193

seq1  GCCAAATCTAGCAACACTGGAATTGCAGGGGCAATTTTA-TATAACCTTA  242
      ||||||||||||||||||||||||||| ||||||||||| ||||||||| 
seq2  GCCAAATCTAGCAACACTGGAATTGCA-GGGCAATTTTATTATAACCTTT  242

seq1  TTTGATGGTACAAGGTACCAACGGGAAGAAATTGATGATGGGGTGACCTT  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGTACAAGGTACCAACGGGAAGAAATTGATGATGGGGTGACCTT  292

seq1  GGTCCAGTCTCACCGAAATAAATCTTCCCTGAAGGGTCTCTGGGTAAAAC  342
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTCCAGTCTCACCGAAATAAATCTT-CCTGAAGGGTCTCTGGGTAAAAC  341

seq1  AAGCCTGCGCACCATGAACACTACACAGGGGGCTTTTCATGTTAAAAAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCGCACCATGAACACTACACAGGGGGCTTTTCATGTTAAAAAGT  391

seq1  CACTTGCTATTTAGGCTTTGAAAAGTCTCAGGCCTATGTGGCCAGGAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTATTTAGGCTTTGAAAAGTCTCAGGCCTATGTGGCCAGGAAAG  441

seq1  GGGTTACTTGTTTCTAATTTGCAGAAATTCCACATTAATTTTTACCAACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTTGTTTCTAATTTGCAGAAATTCCACATTAATTTTTACCAACT  491

seq1  CACCCAATGCAGTCTCTCATTATGGTTTCTCTAAACCACCCAGAAAGCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAATGCAGTCTCTCATTATGGTTTCTCTAAACCACCCAGAAAGCAA  541

seq1  CTTCCAGCAGAACACCTCAACCACCAGTGTCTACCGTCCACTCCCTTGAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCAGAACACCTCAACCACCAGTGTCTACCGTCCACTCCCTTGAC  591

seq1  AGTGTCACTGTGTGTTTAACTCTAAAATTCCCCTCAAAATCCACTAGTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACTGTGTGTTTAACTCTAAAATTCCCCTCAAAATCCACTAGTCT  641

seq1  GACACACTAACTTGCTTAAACACAGCAGATTCCTTTTTTAGAGCAATGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTAACTTGCTTAAACACAGCAGATTCCTTTTTTAGAGCAATGTT  691

seq1  AGAGTGCCAGGGACCAGACAGAGACTCTCAGCAGTCAGGACTTTTCCTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCCAGGGACCAGACAGAGACTCTCAGCAGTCAGGACTTTTCCTGG  741

seq1  AAGTCGCTGGCACCTCGCCCAACAACTCAGGGGATTTAGAATCAGCTCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGCTGGCACCTCGCCCAACAACTCAGGGGATTTAGAATCAGCTCAT  791

seq1  ATCCCTGACAAAAATTCAGGGCTGTTTTTAAAATGCTTTTGCCCATCGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGACAAAAATTCAGGGCTGTTTTTAAAATGCTTTTGCCCATCGTG  841

seq1  GCACATATTGAAACAGAAATGGGTATTTTTTTAAAATCTATAAATTATTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATTGAAACAGAAATGGGTATTTTTTTAAAATCTATAAATTATTA  891

seq1  AGATGGAAGGAAAAAGTGTCTGTGTGTGCGTGTTTTCCAGGGCTCAGACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAGGAAAAAGTGTCTGTGTGTGCGTGTTTTCCAGGGCTCAGACC  941

seq1  CAGGACCTCATATATGATACACAGCCTAGCATTGAGCCACATCCGTAGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCATATATGATACACAGCCTAGCATTGAGCCACATCCGTAGGC  991

seq1  CTGAGTATTGTATCTTTGTCAGTAATTTTAATTCGTATAAAACAACTACC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATTGTATCTTTGTCAGTAATTTTAATTCGTATAAAACAACTACC  1041

seq1  AATTTTTAGAAAGTATTTATTAAAATGTTTAGCCTTCTGAAAGCCATCCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAGAAAGTATTTATTAAAATGTTTAGCCTTCTGAAAGCCATCCT  1091

seq1  ACTTTCCAGGAATTTTTGTGTGTCTCTTCTCCAAGCCAGTAATATCTATG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAGGAATTTTTGTGTGTCTCTTCTCCAAGCCAGTAATATCTATG  1141

seq1  ACACATGGGGCATGGAATTC  1162
      ||||||||||||||||||||
seq2  ACACATGGGGCATGGAATTC  1161

seq1: chr14_44494956_44496046
seq2: B6Ng01-229D12.g_65_1148

seq1  GAATTCAGTCCTGATATTTTTTGTACCAAGTCTGTTTGCTCTGTCATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTGATATTTTTTGTACCAAGTCTGTTTGCTCTGTCATAAA  50

seq1  ACACGAAACTGTTTAGAGTGAATCATCAAATTTCAGATAAGGCCTTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAACTGTTTAGAGTGAATCATCAAATTTCAGATAAGGCCTTGTGT  100

seq1  CTCAGCAATAAACCATTCGAGAAATTGAAGACAAAGCCATCTGTGATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAATAAACCATTCGAGAAATTGAAGACAAAGCCATCTGTGATTGC  150

seq1  TGACTGTGCAAGGGCAAGACAAAAAAATCTCCCAGATCAAGGAATGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCAAGGGCAAGACAAAAAAATCTCCCAGATCAAGGAATGGTGG  200

seq1  CATGTAAGGAAGAAGATGACAGGCAATGTGAGGGGAACTTTGCCTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGGAAGAAGATGACAGGCAATGTGAGGGGAACTTTGCCTGGAAC  250

seq1  ACAGACCTCCAACTCTTTGAGAGTGTAATTCACTCTTCAAATTAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCTCCAACTCTTTGAGAGTGTAATTCACTCTTCAAATTAAAGAGA  300

seq1  GTAAGCAGCAATACCTAATGATACACATTGTCGTCATTTGCTATGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGCAATACCTAATGATACACATTGTCGTCATTTGCTATGAAGAA  350

seq1  AGCAGAGGAAAACAAGAAATAGCAAGTTGGTGAGCAGCTTCCAAGGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGAAAACAAGAAATAGCAAGTTGGTGAGCAGCTTCCAAGGCGAG  400

seq1  CTGCTCTGACTACCACACCTTCCTCTGATCTGTAAGAGTCAACCCCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGACTACCACACCTTCCTCTGATCTGTAAGAGTCAACCCCTGCA  450

seq1  TGCTTCAACACTGCCTGATTCTTCTCCTTCTCCTGTGCACTGTTAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAACACTGCCTGATTCTTCTCCTTCTCCTGTGCACTGTTAGTAAT  500

seq1  GCTGCCTTCTAGGAGAAGGAGACCTGCCTCCCTTCACCTCAAGGTGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTCTAGGAGAAGGAGACCTGCCTCCCTTCACCTCAAGGTGACTG  550

seq1  TGCTTTCAATGCCTTTCGCCTTTCCTCACAGCTACACACTCAAGGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAATGCCTTTCGCCTTTCCTCACAGCTACACACTCAAGGCCATA  600

seq1  ATGGACAAATGGGAAACAATTGCCACCCTTTACTGACCACTTACATCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAATGGGAAACAATTGCCACCCTTTACTGACCACTTACATCAGG  650

seq1  GGTGGTCCTGTGATAAGACCTTGATTAAGTTTTTAAAAATCTACTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCCTGTGATAAGACCTTGATTAAGTTTTTAAAAATCTACTTCTTA  700

seq1  TAATATTTCTACAAAAAGGTGCTGCTGTAGTTCGGTAGCTTATATGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTCTACAAAAAGGTGCTGCTGTAGTTCGGTAGCTTATATGGAAT  750

seq1  TCCACTATGAGAGGCTAAGGAATCTCTCCAACTACACGCTGTACTAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATGAGAGGCTAAGGAATCTCTCCAACTACACGCTGTACTAGTAT  800

seq1  TCTTTCCATTATTGTGAAAAAATGTTGAAACTAATCCACTTAAAAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCATTATTGTGAAAAAATGTTGAAACTAATCCACTTAAAAAAGAG  850

seq1  GAAAGGGTTTGTTTTGATCCATTACTTT-GGTACCTATGGAGGGGTGTTA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAAGGGTTTGTTTTGATCCATTACTTTGGGTACCTATGGAGGGGTGTTA  900

seq1  AATTAATGCAGGAGAGCATGGCAGAGCAGGTACTCACATCATGGTATTAG  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTAATGCAGGAGAGCATGGCAGAGCAGTTACTCACATCATGGTATTAG  950

seq1  GAAACAAAGAAGAACCAAGAAGCTGAGGTCATTTTAAGGACTCCCT-GTG  998
      |||   ||||||||||||| |||||| |||||||| |||||||||| |||
seq2  GAA--CAAGAAGAACCAAG-AGCTGA-GTCATTTT-AGGACTCCCTGGTG  995

seq1  GTCATCCCTTCAGTGATCTTCTTGTTTGTCTGAGTCACCCTGCTCCCAGG  1048
        |||||||||||||||| |||||||||||||||||||||||||||   |
seq2  TCCATCCCTTCAGTGATC-TCTTGTTTGTCTGAGTCACCCTGCTCC--AG  1042

seq1  CAGAAAAGCTGTGGCAATGG-CTGGAGCATGTGACTGGAGAGTT  1091
      ||| |||||||| ||||||| |||||||||||||||||| ||||
seq2  CAG-AAAGCTGT-GCAATGGCCTGGAGCATGTGACTGGAAAGTT  1084