BAC Information

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BAC

Clone NameB6Ng01-229F07
Chromosome14 (Build37)
Map Location 117,413,466 - 117,414,620
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229F07.bB6Ng01-229F07.g
ACCGA042510GA042511
length1,1501,181
definitionB6Ng01-229F07.b B6Ng01-229F07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttacacagtcagatctcagccattacatgagataaatacaaa
gcaaggctcgtctttattttctaagatatcttgttttggggaagcccttt
aaagccatagaaggtgtggccatagttaataaagaggtacacatagtgta
atggtttctgagaaaatcttaatttctaaattaaacaaagtccatcttaa
atcgccctactaagtagattttggattcattcctctggtaagactacaat
gaatgtttcctttctttggagagttatgctgtagattacaaaacccgttt
gcagacttagtcatgaggggatgtataaatgccatctcaaaattagaatg
cttgttctgtttcttccttggtgaaatggtggcacccagttttacttggc
agacagaacaggttcagtccatgtgataattgtaagcataccaaggtcac
gggccaatatgaaaacagtacaacagcagcaatgacatcaacagcagtgt
ctcaccctaggggcaaatgctaactttttaatagagaatgctaactcctc
cacacgtgtctctacactggacagtctatacctgaagaacctgtcttgct
ttgaatttggaggtaacaatcatgaaccccagggagactaaagtgcttgg
gcaatgtcatacactagtgataggagaggcaaaaacgttcacaccacact
tcatagggttgaaaccacttgaagtatatgatgttaatgaatgaggttgt
ccaaatcatgctggtgataatggtgttgatacatcacctacaccatttaa
atgccccagaaactatgatagaaacaatttgttctatcattaacatttgg
caaaggaaacgtgacaaaaataattcttagtgatcttgatggccagtggg
gcactaaaggtgagcatcagagggcgatgaggtgaaagagcatagaaaag
gctcagagattgtctggcttttacagcacaagccattatcaatcaatggg
tcccattggagactaggaataggatggtgggaaactgggcaacggggggg
tggggcctgggatgcataagaaaggcacaataagatcaagttatggagga
gtattgaagctcaaaagatgggacctctttattgacaaacagagaacctg


gaattcatagcactaagtgccatggaaaagaaactggagacaccttacat
taaacacacttaaatgcacttaatgcttaaatgcatgcctgaaagctctg
gaacaacaagaagcaaactcagctgaggagtagaagacaagaaatgttca
aactcagggcagaaatcaaccaaatagaaacatagaaagcaatacagagt
cagcaaaaccaaaagctagttctttgagagaatcaacaagatagataaac
ctctagccaaactaactaaaggactaagagacagtatccaaattaacaaa
atcagaaatgaaaagggaaacataacaacagaaatggagaaaattcaaaa
aaattatcagatcttactttaaaggcttatattcaacaaaactgaaaaat
gtagatgaaatagatggttttctagacagatgctacataccaaagttaaa
tcaagaccaggtaaactatctgaacaggcccatatcacacaaggaaatag
aagacatcatttaaaaccttctaaccaaaataagctcaggaccagatgga
tttattgcagaattctaccagaccttcaaagaagacctgataccaatttt
ccttgaattattccataaaatagaaaaagaaggaacactgcctatctcat
tctgtgaagccacaactactctgatacctaaagcaaacaaggacccaacc
aaaaaaagagatcctcagaccaatttcgcttatgaatatcaatgcaaaaa
tactcaatcaaattcttgcaaactgagtccaagaacacatcaaaactaca
attcaccactatcaagtaggcttcatcccaggaatgcaaggttggcttaa
tattcgaaagtccattaaagtaatcctctatataaacaaactcaaagaat
aaaatcacatgatcatctccttagatgcagaaaaagtatttgacaaaata
acagcacccccttcatgtgaagtattgagagatcagaattcaaggcccat
acctaacatataaagcaatttactgcaaccaacagccatatcaaatgatg
agcatacttggagcagtccactgaatcaagacaagaaatactatccctcc
atatggtattcaatatagtactcaaggttagctaaacataggacaataaa
ggaggattcaaggtatatccaaattgtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117413466_117414620
seq2: B6Ng01-229F07.b_46_1195 (reverse)

seq1  CAGG-TCTCTGGTTTTGTCAATAAAGGAGGTTCCATCTTTTTGAGCTTCA  49
      |||| ||||||  |||||||||||| ||||| ||||| ||||||||||||
seq2  CAGGTTCTCTG--TTTGTCAATAAA-GAGGTCCCATC-TTTTGAGCTTCA  46

seq1  TTACTCCTTCCATAACCTTGATCCTTATTGTGGCTTTTTCTTTAATGCAT  99
       |||||| ||||||| |||||| ||||||||| |  ||||||  ||||||
seq2  ATACTCC-TCCATAA-CTTGAT-CTTATTGTGCC--TTTCTT--ATGCAT  89

seq1  -CCAGGCCC--ACCCCCCGTTGGCCAGTTTCCCA-CATCCTATTCCTAGT  145
       ||||||||   |||||||||| ||||||||||| |||||||||||||||
seq2  CCCAGGCCCCACCCCCCCGTTGCCCAGTTTCCCACCATCCTATTCCTAGT  139

seq1  CTTCAATGGGACCATTTGATTGAATAATGGCTTGTGCTGTAAAAGCCAGA  195
      || ||||||||||  ||||||| |||||||||||||||||||||||||||
seq2  CTCCAATGGGACCCATTGATTG-ATAATGGCTTGTGCTGTAAAAGCCAGA  188

seq1  CAATCTCTGAGCCTTTTCTATGCTCTTTCACCTCATCGCCCTCTGATGCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTGAGCCTTTTCTATGCTCTTTCACCTCATCGCCCTCTGATGCT  238

seq1  CACC-TTAGTG-CCCACTGGCCATCAAGATCACTAAGAATTATTTTTGTC  293
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAGTGCCCCACTGGCCATCAAGATCACTAAGAATTATTTTTGTC  288

seq1  ACGTTTCCTTTTGCAAATGTTAATGATAGAACAAATTGTTTCTATCATAG  343
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCCTTTGCCAAATGTTAATGATAGAACAAATTGTTTCTATCATAG  338

seq1  TTTCTGGGGCATTTAAATGGTGTAGGTGATGTATCAACACCATTATCACC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGGCATTTAAATGGTGTAGGTGATGTATCAACACCATTATCACC  388

seq1  AGCATGATTTGGACAACCTCATTCATTAACATCATATACTTCAAGTGGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATTTGGACAACCTCATTCATTAACATCATATACTTCAAGTGGTT  438

seq1  TCAACCCTATGAAGTGTGGTGTGAACGTTTTTGCCTCTCCTATCACTAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTATGAAGTGTGGTGTGAACGTTTTTGCCTCTCCTATCACTAGT  488

seq1  GTATGACATTGCCCAAGCACTTTAGTCTCCCTGGGGTTCATGATTGTTAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACATTGCCCAAGCACTTTAGTCTCCCTGGGGTTCATGATTGTTAC  538

seq1  CTCCAAATTCAAAGCAAGACAGGTTCTTCAGGTATAGACTGTCCAGTGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATTCAAAGCAAGACAGGTTCTTCAGGTATAGACTGTCCAGTGTA  588

seq1  GAGACACGTGTGGAGGAGTTAGCATTCTCTATTAAAAAGTTAGCATTTGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACGTGTGGAGGAGTTAGCATTCTCTATTAAAAAGTTAGCATTTGC  638

seq1  CCCTAGGGTGAGACACTGCTGTTGATGTCATTGCTGCTGTTGTACTGTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGGTGAGACACTGCTGTTGATGTCATTGCTGCTGTTGTACTGTTT  688

seq1  TCATATTGGCCCGTGACCTTGGTATGCTTACAATTATCACATGGACTGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGGCCCGTGACCTTGGTATGCTTACAATTATCACATGGACTGAA  738

seq1  CCTGTTCTGTCTGCCAAGTAAAACTGGGTGCCACCATTTCACCAAGGAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTGTCTGCCAAGTAAAACTGGGTGCCACCATTTCACCAAGGAAG  788

seq1  AAACAGAACAAGCATTCTAATTTTGAGATGGCATTTATACATCCCCTCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAAGCATTCTAATTTTGAGATGGCATTTATACATCCCCTCAT  838

seq1  GACTAAGTCTGCAAACGGGTTTTGTAATCTACAGCATAACTCTCCAAAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTCTGCAAACGGGTTTTGTAATCTACAGCATAACTCTCCAAAGA  888

seq1  AAGGAAACATTCATTGTAGTCTTACCAGAGGAATGAATCCAAAATCTACT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACATTCATTGTAGTCTTACCAGAGGAATGAATCCAAAATCTACT  938

seq1  TAGTAGGGCGATTTAAGATGGACTTTGTTTAATTTAGAAATTAAGATTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGGCGATTTAAGATGGACTTTGTTTAATTTAGAAATTAAGATTTT  988

seq1  CTCAGAAACCATTACACTATGTGTACCTCTTTATTAACTATGGCCACACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAACCATTACACTATGTGTACCTCTTTATTAACTATGGCCACACC  1038

seq1  TTCTATGGCTTTAAAGGGCTTCCCCAAAACAAGATATCTTAGAAAATAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGCTTTAAAGGGCTTCCCCAAAACAAGATATCTTAGAAAATAAA  1088

seq1  GACGAGCCTTGCTTTGTATTTATCTCATGTAATGGCTGAGATCTGACTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGCCTTGCTTTGTATTTATCTCATGTAATGGCTGAGATCTGACTGT  1138

seq1  GTAAGAGAATTC  1155
      ||||||||||||
seq2  GTAAGAGAATTC  1150


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