BAC Information

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BAC

Clone NameB6Ng01-232B10
Chromosome14 (Build37)
Map Location 27,742,761 - 27,856,319
singlet/doubletdoublet
Overlap geneAppl1, Hesx1, Il17rd
Upstream geneD14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232B10.bB6Ng01-232B10.g
ACCGA044511GA044512
length1,2201,001
definitionB6Ng01-232B10.b B6Ng01-232B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,855,135 - 27,856,319)(27,742,761 - 27,743,471)
sequence
gaattccttcttagcaggacagtgggggaagtttgggaacctcacggcac
aagggattgacatattaaatcgcaaagttacccatcacagacagaacaaa
tttgccatcaaaaagtaagagttggggctagaaagaggatttaaagggca
caagcacttgctgggcaggcaaagagactggagctccgatccccaccacc
ttataaaatcaaacttggctgctcatgcttgtgtagctatgactacactg
agagtgattgtgggaggcagagacaggaggatcacgggcacttgctggct
gccagcctagacccaggttcagtgagagaccttgagtcaggggaataaaa
caaagtaatggactgggtcacctgacatcccctggcctgcgcaggagtgc
acacctgcaccacttaatccaataaatcaaggaaataaaacacacattct
caatgttcgggccagcccctctggaagccccttcataaattgtaactcct
ttgaaaaaacaatatttatcattcaaagcacaactttacctggcaaagac
catgagactttttttttccttcaaggagttgaggaagtgtgcccacagct
catttctaaaacactgagctgtgtccgagatggtatcagttccttaatta
ccccacaagtaatagggaggttgtgaaacctgaccacttaaaccaggccg
gctcctggccccggagagcagctctcctgggaaaatatccagccctccag
tggcctgcgttttcaagcccaaatgtcccatggagattaaaggggacatt
cactcatctgttctccagcatccaggtcctgtccctcctccaggcttcag
gtttcaaagttctaagagagactcagaccccaggataccccacttatgtt
cgtgtccatgtatatttaccctcactcttgtttgtctgaggtagggaatg
atatgcactttatcccttgggttggccctagaactccatatgttagaaga
aagctggtccttgatacttcaagagatcttacttctacagtctgagtgct
tggtacctaaagccttaccagccatctcccttttatttttctttatcttc
ttaccctctctaagcaatggggaatgcctcccggacctctggaggatggc
agattgctagcctaggccgagctcacgcttacccgaatgtacttacggtc
tatgatccctccatagactt
gaattcaaagtcatccttggttacatagtgaatttgaaggcagcctagta
acttatttgagaactacctttaaaaaaaagaaaggaaggaaagaaggaag
aaaaagaaatagaaaactgtacatacccttccacataccctccccacacc
caacccacctgggtcccattgtcaagtgcttcttgacataggcacccctg
tgagcgcctctaccaacctctaggattctgctaagacctgtcctgtttat
tcccaacctagaagcccctcctcccacacgctatctaacctctcgaccta
gccacagctacctcacactccaggcttggactacaacacgtcatctgtgc
accagtccagtccactgtacctacctgacttccttctacctaagacattt
cttacctctagggctaacccgcctatacatcccttcttgtgtcccaacat
gctctgtccccactagacataaaactaagataggaaatccatatgcccag
atcttatggcaaaaattcaaacaatatgaaaaaaaaaatcaagctagtat
ttcctctccaaaacctaccagtgctgtacaaatgtctgccaaggcaaacc
ccaagacacagaatttaaaagaacaatcaaaaacttcaaataatttaaac
actttaagacaggaaggaacaactcaatgaaattaaggagaacttgagaa
gaaccagcacttgagtgatacctaagagaacataaacataaagttggtgg
aaattatgaagaaaatccaggacttgagaagagaattcaataaagagata
gaatcactaggtctctgatgaaaggagggtagatctgaaaagcccagtaa
ccaactagaagactcaggagaaagcctggcaagtaaaatgcaaaaggcag
aatattaggttttgaagatataatagagaatttagaccaaattatcaaaa
atatgggaaaaaaacttaaaacacaataaaggacttaggaaaatgtggca
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27855135_27856319
seq2: B6Ng01-232B10.b_44_1263 (reverse)

seq1  AAGTCTA-GGAGGGATCATAGAACTGTAGTCCA-TCGG--TAGCGT--GC  44
      ||||||| |||||||||||||| |   ||| || ||||   |||||  ||
seq2  AAGTCTATGGAGGGATCATAGACCGTAAGTACATTCGGGTAAGCGTGAGC  50

seq1  TC-GCCTAGCCTAGCATCCTG-CATCCTCCAG-GGTCTGG--AGCATTCC  89
      || |||||| ||||||  ||| |||||||||| |||| ||   |||||||
seq2  TCGGCCTAGGCTAGCAATCTGCCATCCTCCAGAGGTCCGGGAGGCATTCC  100

seq1  CCATTGCTT--AGAGGGTAAGAAGAT-AAGAAA---TAAAGGGAG-TGGC  132
      |||||||||  ||||||||||||||| ||||||    |||||||| ||||
seq2  CCATTGCTTAGAGAGGGTAAGAAGATAAAGAAAAATAAAAGGGAGATGGC  150

seq1  TTGT-AGCCTTTA-GTACC-AGCACTCAGACTGTAGAGGT-AGATCTCT-  177
      | || || ||||| ||||| ||||||||||||||||| || |||||||| 
seq2  TGGTAAGGCTTTAGGTACCAAGCACTCAGACTGTAGAAGTAAGATCTCTT  200

seq1  -GAGT-TCAAGG-CCAGCTTTC-TCT-ACATATGGAGTTCTA-GGCCAAC  221
        ||| |||||| ||||||||| ||| ||||||||||||||| |||||||
seq2  GAAGTATCAAGGACCAGCTTTCTTCTAACATATGGAGTTCTAGGGCCAAC  250

seq1  C--AAGGAT-AAGTGCAT-TCATTCCCTACCTCAGACAAACAAGAGTGAG  267
      |  | |||| |||||||| |||||||||||||||||||||||||||||||
seq2  CCAAGGGATAAAGTGCATATCATTCCCTACCTCAGACAAACAAGAGTGAG  300

seq1  GGTAAATTATACAT-GACACGAACATAAGT-GGGTATCCTGGGGTCTGAG  315
      |||||| ||||||| ||||||||||||||| |||||||||||||||||||
seq2  GGTAAA-TATACATGGACACGAACATAAGTGGGGTATCCTGGGGTCTGAG  349

seq1  TCTCTCTTAGAACTTTGAACCTTGAAGCCTGGAGGAGGGACAGGACCTGG  365
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  TCTCTCTTAGAACTTTGAAACCTGAAGCCTGGAGGAGGGACAGGACCTGG  399

seq1  ATGCTGGAGAACAGATGAGTGAATGTCCCCTTTAATCTCCATGGGACATT  415
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGAACAGATGAGTGAATGTCCCCTTTAATCTCCATGGGACATT  449

seq1  TGGGCTTG-AAACGCAGGCCACTGGAGGGCTGGATATTTTCCCAGGAGAG  464
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGAAAACGCAGGCCACTGGAGGGCTGGATATTTTCCCAGGAGAG  499

seq1  CTGCTCTCCGGGGCCAGGAGCCGGCCTGGTTTAAGTGGTCAGGTTTCACA  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCCGGGGCCAGGAGCCGGCCTGGTTTAAGTGGTCAGGTTTCACA  549

seq1  ACCTCCCTATTACTTGTGGGGTAATTAAGGAACTGATACCATCTCGGACA  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTATTACTTGTGGGGTAATTAAGGAACTGATACCATCTCGGACA  599

seq1  CAGCTCAGTGTTTTAGAAATGAGCTGTGGGCACACTTCCTCAACTCCTTG  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGTGTTTTAGAAATGAGCTGTGGGCACACTTCCTCAACTCCTTG  649

seq1  AAGGAAAAAAAAAGTCTCATGGTCTTTGCCAGGTAAAGTTGTGCTTTGAA  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAAAGTCTCATGGTCTTTGCCAGGTAAAGTTGTGCTTTGAA  699

seq1  TGATAAATATTGTTTTTTCAAAGGAGTTACAATTTATGAAGGGGCTTCCA  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATATTGTTTTTTCAAAGGAGTTACAATTTATGAAGGGGCTTCCA  749

seq1  GAGGGGCTGGCCCGAACATTGAGAATGTGTGTTTTATTTCCTTGATTTAT  764
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTGGCCCGAACATTGAGAATGTGTGTTTTATTTCCTTGATTTAT  799

seq1  TGGATTAAGTGGTGCAGGTGTGCACTCCTGCGCAGGCCAGGGGATGTCAG  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAAGTGGTGCAGGTGTGCACTCCTGCGCAGGCCAGGGGATGTCAG  849

seq1  GTGACCCAGTCCATTACTTTGTTTTATTCCCCTGACTCAAGGTCTCTCAC  864
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCAGTCCATTACTTTGTTTTATTCCCCTGACTCAAGGTCTCTCAC  899

seq1  TGAACCTGGGTCTAGGCTGGCAGCCAGCAAGTGCCCGTGATCCTCCTGTC  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGGTCTAGGCTGGCAGCCAGCAAGTGCCCGTGATCCTCCTGTC  949

seq1  TCTGCCTCCCACAATCACTCTCAGTGTAGTCATAGCTACACAAGCATGAG  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCACAATCACTCTCAGTGTAGTCATAGCTACACAAGCATGAG  999

seq1  CAGCCAAGTTTGATTTTATAAGGTGGTGGGGATCGGAGCTCCAGTCTCTT  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGTTTGATTTTATAAGGTGGTGGGGATCGGAGCTCCAGTCTCTT  1049

seq1  TGCCTGCCCAGCAAGTGCTTGTGCCCTTTAAATCCTCTTTCTAGCCCCAA  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCAGCAAGTGCTTGTGCCCTTTAAATCCTCTTTCTAGCCCCAA  1099

seq1  CTCTTACTTTTTGATGGCAAATTTGTTCTGTCTGTGATGGGTAACTTTGC  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTTTTTGATGGCAAATTTGTTCTGTCTGTGATGGGTAACTTTGC  1149

seq1  GATTTAATATGTCAATCCCTTGTGCCGTGAGGTTCCCAAACTTCCCCCAC  1164
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATATGTCAATCCCTTGTGCCGTGAGGTTCCCAAACTTCCCCCAC  1199

seq1  TGTCCTGCTAAGAAGGAATTC  1185
      |||||||||||||||||||||
seq2  TGTCCTGCTAAGAAGGAATTC  1220

seq1: chr14_27742761_27743471
seq2: B6Ng01-232B10.g_66_776

seq1  GAATTCAAAGTCATCCTTGGTTACATAGTGAATTTGAAGGCAGCCTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCATCCTTGGTTACATAGTGAATTTGAAGGCAGCCTAGTA  50

seq1  ACTTATTTGAGAACTACCTTTAAAAAAAAGAAAGGAAGGAAAGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTGAGAACTACCTTTAAAAAAAAGAAAGGAAGGAAAGAAGGAAG  100

seq1  AAAAAGAAATAGAAAACTGTACATACCCTTCCACATACCCTCCCCACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATAGAAAACTGTACATACCCTTCCACATACCCTCCCCACACC  150

seq1  CAACCCACCTGGGTCCCATTGTCAAGTGCTTCTTGACATAGGCACCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACCTGGGTCCCATTGTCAAGTGCTTCTTGACATAGGCACCCCTG  200

seq1  TGAGCGCCTCTACCAACCTCTAGGATTCTGCTAAGACCTGTCCTGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCCTCTACCAACCTCTAGGATTCTGCTAAGACCTGTCCTGTTTAT  250

seq1  TCCCAACCTAGAAGCCCCTCCTCCCACACGCTATCTAACCTCTCGACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACCTAGAAGCCCCTCCTCCCACACGCTATCTAACCTCTCGACCTA  300

seq1  GCCACAGCTACCTCACACTCCAGGCTTGGACTACAACACGTCATCTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCTACCTCACACTCCAGGCTTGGACTACAACACGTCATCTGTGC  350

seq1  ACCAGTCCAGTCCACTGTACCTACCTGACTTCCTTCTACCTAAGACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCAGTCCACTGTACCTACCTGACTTCCTTCTACCTAAGACATTT  400

seq1  CTTACCTCTAGGGCTAACCCGCCTATACATCCCTTCTTGTGTCCCAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCTAGGGCTAACCCGCCTATACATCCCTTCTTGTGTCCCAACAT  450

seq1  GCTCTGTCCACACTAGACATAAAACTAAGATAGGAAATCCATATGCCCAG  500
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCCCCACTAGACATAAAACTAAGATAGGAAATCCATATGCCCAG  500

seq1  ATCTTATGGCAAAAATTCAAACAATATGAAAAAAAAAATCAAGCTAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGGCAAAAATTCAAACAATATGAAAAAAAAAATCAAGCTAGTAT  550

seq1  TTCCTCTCCAAAACCTACCAGTGCTGTACAAATGTCTGCCAAGGCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCAAAACCTACCAGTGCTGTACAAATGTCTGCCAAGGCAAACC  600

seq1  CCAAGACACAGAATTTAAAAGAACAATCAAAAACTTCAAATAATTTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACACAGAATTTAAAAGAACAATCAAAAACTTCAAATAATTTAAAC  650

seq1  ACTTTAAGACAGGAAGGAACAACTCAATGAAATTAAGGAGAACTTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGACAGGAAGGAACAACTCAATGAAATTAAGGAGAACTTGAGAA  700

seq1  GAACCAGCACT  711
      |||||||||||
seq2  GAACCAGCACT  711