BAC Information

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BAC

Clone NameB6Ng01-233K08
Chromosome14 (Build37)
Map Location 88,797,739 - 88,798,868
singlet/doubletsinglet
Overlap genenone
Upstream geneTdrd3, LOC100043317, LOC100043780, LOC668624, LOC668625
Downstream genePcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233K08.bB6Ng01-233K08.g
ACCGA045642GA045643
length1,2201,142
definitionB6Ng01-233K08.b B6Ng01-233K08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagcccttccagagatttcagctttgttatagtcaatcttcgcc
acacttccctatcatcttctccaacttaagtagctcagagtacgcttcaa
ctgcaacccaatccatccttcttaaatgccaaaaaaaaattagaaaacga
atctatattggtcacctctattacagaatctctcacttattctattgcca
tctgccttagtcagggtttctattccagcacaaacatcatgaccaagaag
caagctgggaggaaagggtttattcggcttacacttccatgctgctgttc
atcaccaaaggaagtcaggactggaactcaggcaggtcaggaagcaggag
ctgatgcagaggccatagagggatgttccttactagcttgcctcctctgg
cttgctcagcctgctctcttatagaacccaagactaccaccccagagatg
gtcccacccacaaggggcctttcccccttgatcaccaattgagaaaatgc
cttagagttggatctcatggaggcatttcctcaactgaagctcctttctc
tgtgataaccccagctgtgtcaagttgacacaaaacgagccagtacacca
tctatggtctgtgcatcccactccttggttaaattgaacaagtgatatat
tgagacagctagtactatctttctttgacttgctactacaaattatttac
catggaggctcacacatattccacttatgttaaccataaaaaaataaaga
aggatttacatatctatgaaaagaaaactgctattgtaatatgttagata
ctgaattactaaggagtttattcgattttttttctcagtgtgacagaata
gacaggttttttttttccctgccaattatatttgtctagtgaattccttg
aaatcttctttgcagtttggatatgaaatattccccagacgctcgaatac
tgaatgactgatgctcagtttttccttgtcttaagggttttactaatgtg
aacagacacaatgaccaaggtaactctcataagacaacatttaactgggg
ctggcttacagtcggaagtttagtccattatcatcaaggcaaggaacatg
cagcatccaagcaacgaattggtacaagaagagcctgagaatcttatatc
tcatctgagtactaagcaaaatgtctgcgcttcagaggtgcttagcgata
gtgaagagattcttttaatc
gaattctgaaaaaggaagacgtattcttaattgttgagcagtcactccag
cccatatcttctaaaacatcaaccaagactatctttatccaaggaagaga
aacatttctttctttcgatactatgctctttgccacacagatattcttag
catgataatgtgaagcaaaagaaactggcataaatatataatatatacag
aaaacagaatctaggaagggtatcttataaagtaggtcttccaaacaagt
gcaaaatagaaaaaatattagtgttacaacaaagttaatgctcacttata
atagctcaattatgattatatatgaaatgccctttaagactcttacagat
ataagaccttcaaatagtaacgattaggtaaacagtgtaatgctttcagg
tttccctcaatattggaaagtgagtattatgcaattcattttttgtttgt
ttatgcttggtattatagaaataacaaaattgtacattctttgaaatact
tcactatttctttggggaagataatatcaccatgtaaactagagaacaac
ttacgatggtatttattaaaatgctagatcatgactatagaatcaatatc
ctattttttctagttataagccattttaacattcattgctttcttttgtg
tgcctcactcatagcacagtactttattgatattacaatttaaaaatctt
atcactgaaatagccaagtctcttacatgtgatgctgtattatatgtaaa
taaaatatatgtaatattacattatttatcactccaaatgtattatttgg
agaagaaaatgaatctcaaagtgtgcaattgctctcccaggataagacgc
ctagtgagtgttaaaggcagaacttaaacatgtgctctaatctgtgttct
agcaccctgcattctacttgcaatgcttttctgacttctaatttaacatg
ttccacttctctacctctgaggatatgaagtccaaaagtaattattattt
gcagcttgtaattgtcatctcagaaggtttattgctgactagctcatccc
tttctaggttcttttctgaacctctgctgctggttgaactcaggctggtt
cctggctcaactggctctctccaagctgattgtgaattcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88797739_88798868
seq2: B6Ng01-233K08.g_64_1205

seq1  GAATTCTGAAAAAGGAAGACGTATTCTTAATTGTTGAGCAGTCACTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAAAGGAAGACGTATTCTTAATTGTTGAGCAGTCACTCCAG  50

seq1  CCCATATCTTCTAAAACATCAACCAAGACTATCTTTATCCAAGGAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTTCTAAAACATCAACCAAGACTATCTTTATCCAAGGAAGAGA  100

seq1  AACATTTCTTTCTTTCGATACTATGCTCTTTGCCACACAGATATTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTTTCTTTCGATACTATGCTCTTTGCCACACAGATATTCTTAG  150

seq1  CATGATAATGTGAAGCAAAAGAAACTGGCATAAATATATAATATATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAATGTGAAGCAAAAGAAACTGGCATAAATATATAATATATACAG  200

seq1  AAAACAGAATCTAGGAAGGGTATCTTATAAAGTAGGTCTTCCAAACAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAATCTAGGAAGGGTATCTTATAAAGTAGGTCTTCCAAACAAGT  250

seq1  GCAAAATAGAAAAAATATTAGTGTTACAACAAAGTTAATGCTCACTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATAGAAAAAATATTAGTGTTACAACAAAGTTAATGCTCACTTATA  300

seq1  ATAGCTCAATTATGATTATATATGAAATGCCCTTTAAGACTCTTACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAATTATGATTATATATGAAATGCCCTTTAAGACTCTTACAGAT  350

seq1  ATAAGACCTTCAAATAGTAACGATTAGGTAAACAGTGTAATGCTTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCTTCAAATAGTAACGATTAGGTAAACAGTGTAATGCTTTCAGG  400

seq1  TTTCCCTCAATATTGGAAAGTGAGTATTATGCAATTCATTTTTTGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCAATATTGGAAAGTGAGTATTATGCAATTCATTTTTTGTTTGT  450

seq1  TTATGCTTGGTATTATAGAAATAACAAAATTGTACATTCTTTGAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTGGTATTATAGAAATAACAAAATTGTACATTCTTTGAAATACT  500

seq1  TCACTATTTCTTTGGGGAAGATAATATCACCATGTAAACTAGAGAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTTCTTTGGGGAAGATAATATCACCATGTAAACTAGAGAACAAC  550

seq1  TTACGATGGTATTTATTAAAATGCTAGATCATGACTATAGAATCAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGATGGTATTTATTAAAATGCTAGATCATGACTATAGAATCAATATC  600

seq1  CTATTTTTTCTAGTTATAAGCCATTTTAACATTCATTGCTTTCTTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTCTAGTTATAAGCCATTTTAACATTCATTGCTTTCTTTTGTG  650

seq1  TGCCTCACTCATAGCACAGTACTTTATTGATATTACAATTTAAAAATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCACTCATAGCACAGTACTTTATTGATATTACAATTTAAAAATCTT  700

seq1  ATCACTGAAATAGCCAAGTCTCTTACATGTGATGCTGTATTATATGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAAATAGCCAAGTCTCTTACATGTGATGCTGTATTATATGTAAA  750

seq1  TAAAATATATGTAATATTACATTATTTATCACTCCAAATGTATTATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATATGTAATATTACATTATTTATCACTCCAAATGTATTATTTGG  800

seq1  AGAAGAAAATGAATCTCAAAGTGTGCAATTGCTCTCCCAGGATAAGACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAATGAATCTCAAAGTGTGCAATTGCTCTCCCAGGATAAGACGC  850

seq1  CTAGTGAGTGTT-AAGGCAGAACTTAAACATGTGCTCTAATCTGTGTTCT  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAGTGTTAAAGGCAGAACTTAAACATGTGCTCTAATCTGTGTTCT  900

seq1  AGCACCCTGCATTCTACTTGCAAATGC-TTTCTGACTTCTAATTTAACAT  948
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AGCACCCTGCATTCTACTTGC-AATGCTTTTCTGACTTCTAATTTAACAT  949

seq1  GTTCCACTTCTCTACCTCTGAGGATATGAAGTCCAAAAGTAATTA-TATT  997
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTCCACTTCTCTACCTCTGAGGATATGAAGTCCAAAAGTAATTATTATT  999

seq1  TGCAAGCTGTAATTGTCATCTCAG-AGGTTTATTGCTGACTAAGCTCAT-  1045
      ||||   ||||||||||||||||| |||||||||||||||| ||||||| 
seq2  TGCAGCTTGTAATTGTCATCTCAGAAGGTTTATTGCTGACT-AGCTCATC  1048

seq1  CCTTTCTA-GTTC-TTTCTGAA-CTCTGGCTGGCTGGTTGAACTCA-GCT  1091
      |||||||| |||| |||||||| |||| ||| |||||||||||||| |||
seq2  CCTTTCTAGGTTCTTTTCTGAACCTCT-GCT-GCTGGTTGAACTCAGGCT  1096

seq1  G--TTCTGGCTCAAACTG---CTCTCCAAGCTGATTG---ATTCAAC  1130
      |  | ||||||| |||||   ||||||||||||||||   |||||||
seq2  GGTTCCTGGCTC-AACTGGCTCTCTCCAAGCTGATTGTGAATTCAAC  1142