BAC Information

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BAC

Clone NameB6Ng01-234I09
Chromosome14 (Build37)
Map Location 103,893,835 - 104,060,125
singlet/doubletdoublet
Overlap geneScel, LOC100043448, Slain1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneEdnrb, Pou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234I09.bB6Ng01-234I09.g
ACCGA046266GA046267
length1,158984
definitionB6Ng01-234I09.b B6Ng01-234I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,893,835 - 103,895,003)(104,059,142 - 104,060,125)
sequence
gaattctcagtattcagagctgagagggggtaaaaagtcattatagtctt
ctgttgttgttgttattgttattaatactattagaaggtgatgagggagg
tgcttatgtgctacacatggggccagaggacacttttgtggagcaagttc
tttcttttcctggactctaggctcaattcattcattgcatgtattcattt
attattctacatatactttcagatataatttcaggcagacatgggggcct
gacctggggtatggttgatatgtacagtcacactccattgggaaaaagtg
attttccctttgccatcaggaatgaattgcaaataacttcttggttaggg
ttgggactttgtgtccacttccccttctcagtgctgggaccccatcagac
atgaacttgtgcaaggtcctttgtgtggtaccacagtctctgtggtctcc
ttggtccagttatgtcttgaagacagtttacttatatacccaccccttct
ggttcttacactctttttgccttctcttccagatgggtccctgagccttg
aggggaggggtttagtgaagacctcagttgaacccagatcatcagacttg
ggtggcaaacgccttcacctgctgagccatttctctggaactagactttg
tggttgccaaaaacttcagttgattaatatctttcgtagtctatgacctg
caaccatcaataaatttcatcagctgcaaaattaaagttctatttcataa
tcaagttaaacttttgagaaataatttctcaagggctttccattattgga
aggtgtctgggtggaatgctcatggaacttaatccggatcgtgttaggtg
gctacctgtcgatggatatgagtgtcacctaattttatctaccttcacga
gtaattaattaccttcatgagtaatgctgggccctgagttggcattagaa
cttcgaaaatagtaaagatatttcagatcccaaaactgtgtgtgtatagc
tacaatctgacaggaacagagacgtaatacagtgatcgacatgcccttac
ttgggatgtagaaatctgtttctgcttacgtccttgacctttttcactgt
cacttattcaatgaacacgaatgctcaggggtggctacttggaataagat
gctgggga
gaattcttaaaatgccaggagaaatataaagaggaactcaaggataggat
aaagcaaaaggaaaacacagaaatcttgaccatcggttgagggaaactga
acacatggccaccaggaggacccagaaagaacagagaaaacgggctgcgg
gtaaagagcttatacagaaataaggcaacaggtgcttgcgcaggcaaagt
ttccagatcggaagtaactctgcatgagcaccacaaaggaattaaaggat
aaattcataatgcccccaatacaggacaatactctaaaacgcccacccat
gttattttaagcagtagacatgtaaagaacgcctaagaagaacagcgtta
cagctactgcagcatctggcctgaaggtgacaccttctacgtcctctggg
gaacattgacctaagaactcagcgtgtccccaaccactgggacaaagata
cacagacaatggcaccctcaaagttcagcccctcacactccctcgcctat
tctcatcccaagcagcaagtaaaggtggcaggccaataaaggaggagagg
ctggaagagagggcgggcatctgaggagccaccgagaagaagccaggagg
atgtgagcgtgggacagaggagaccctgccatggccgctgtggaaggcaa
cagacatctggaactaaaaagaatggaagagagtgcatggccaggaacag
gacaggacaccaggccccttacactcagagaggacccagagagtctggag
taaactgatgaacagaactgagaaaatcacctttgtgtagcaaagtaaaa
actaagtgagatgcaaaatatgataagatattgcaatgcctgcatataag
cactatcacaaaaacatctatgcatgctataattcataaaaagccaagtt
agaaagctgtgctgagaaaataatataaggagatgaggaggaaccagaaa
ttaaacctcacaaccaaagtcgcaagcctgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103893835_103895003
seq2: B6Ng01-234I09.b_46_1203

seq1  GAATTCTCAGTATTCAGAGCTGAGAGGGGGTAAAAAGTCATTATAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTATTCAGAGCTGAGAGGGGGTAAAAAGTCATTATAGTCTT  50

seq1  CTGTTGTTGTTGTTATTGTTATTAATACTATTAGAAGGTGATGAGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGTTGTTATTGTTATTAATACTATTAGAAGGTGATGAGGGAGG  100

seq1  TGCTTATGTGCTACACATGGGGCCAGAGGACACTTTTGTGGAGCAAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGTGCTACACATGGGGCCAGAGGACACTTTTGTGGAGCAAGTTC  150

seq1  TTTCTTTTCCTGGACTCTAGGCTCAATTCATTCATTGCATGTATTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCTGGACTCTAGGCTCAATTCATTCATTGCATGTATTCATTT  200

seq1  ATTATTCTACATATACTTTCAGATATAATTTCAGGCAGACATGGGGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTACATATACTTTCAGATATAATTTCAGGCAGACATGGGGGCCT  250

seq1  GACCTGGGGTATGGTTGATATGTACAGTCACACTCCATTGGGAAAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGGTATGGTTGATATGTACAGTCACACTCCATTGGGAAAAAGTG  300

seq1  ATTTTCCCTTTGCCATCAGGAATGAATTGCAAATAACTTCTTGGTTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTTTGCCATCAGGAATGAATTGCAAATAACTTCTTGGTTAGGG  350

seq1  TTGGGACTTTGTGTCCACTTCCCCTTCTCAGTGCTGGGACCCCATCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTTTGTGTCCACTTCCCCTTCTCAGTGCTGGGACCCCATCAGAC  400

seq1  ATGAACTTGTGCAAGGTCCTTTGTGTGGTACCACAGTCTCTGTGGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGTGCAAGGTCCTTTGTGTGGTACCACAGTCTCTGTGGTCTCC  450

seq1  TTGGTCCAGTTATGTCTTGAAGACAGTTTACTTATATACCCACCCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCAGTTATGTCTTGAAGACAGTTTACTTATATACCCACCCCTTCT  500

seq1  GGTTCTTACACTCTTTTTGCCTTCTCTTCCAGATGGGTCCCTGAGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTACACTCTTTTTGCCTTCTCTTCCAGATGGGTCCCTGAGCCTTG  550

seq1  AGGGGAGGGGTTTAGTGAAGACCTCAGTTGAACCCAGATCATCAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGGGTTTAGTGAAGACCTCAGTTGAACCCAGATCATCAGACTTG  600

seq1  GGTGGCAAACGCCTTCACCTGCTGAGCCATTTCTCTGGAACTAGACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAACGCCTTCACCTGCTGAGCCATTTCTCTGGAACTAGACTTTG  650

seq1  TGGTTGCCAAAAACTTCAGTTGATTAATATCTTTCGTAGTCTATGACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCAAAAACTTCAGTTGATTAATATCTTTCGTAGTCTATGACCTG  700

seq1  CAACCATCAATAAATTTCATCAGCTGCAAAATTAAAGTTCTATTTCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCAATAAATTTCATCAGCTGCAAAATTAAAGTTCTATTTCATAA  750

seq1  TCAAGTTAAACTTTTGAGAAATAATTTCTCAAGGGCTTTCCATTATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAAACTTTTGAGAAATAATTTCTCAAGGGCTTTCCATTATTGGA  800

seq1  AGGTGTCTGGGTGGAATGCTCATGGAACTTAATCCGGATCGTGTTAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTGGGTGGAATGCTCATGGAACTTAATCCGGATCGTGTTAGGTG  850

seq1  GCTACCTGTCGATGGATATGAGTGTCACCTAATTTTATCTACCTTCACGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTGTCGATGGATATGAGTGTCACCTAATTTTATCTACCTTCACGA  900

seq1  GTAATTAATTACCTTCATGAGTAATGCT-GGCCCTGAGTTGGCATTAGAA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTAATTAATTACCTTCATGAGTAATGCTGGGCCCTGAGTTGGCATTAGAA  950

seq1  CTTCGAAAATAAGTAAAGATATTTCAGATCCCAAAACTGTGTGTGTTATA  999
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CTTCGAAAAT-AGTAAAGATATTTCAGATCCCAAAACTGTGTGTG-TATA  998

seq1  GCTACAATCTTGACAGGAACAGAGACGTTATACAGTGATCGACATGCCCT  1049
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  GCTACAATC-TGACAGGAACAGAGACGTAATACAGTGATCGACATGCCCT  1047

seq1  TACCTGGGATGTAGAAATCTGTTTCTGCTTTACGTCCCTGACTTTTTTCA  1099
      ||| |||||||||||||||||||||||| |||||||| |||| |||||||
seq2  TACTTGGGATGTAGAAATCTGTTTCTGC-TTACGTCCTTGACCTTTTTCA  1096

seq1  CTGTCACTTTATTCTAATGAAATCTCAGATGCTCAGGGTGTGGCTACTTT  1149
      ||||||| |||||| ||||||  | |  |||||||||| ||||||||  |
seq2  CTGTCAC-TTATTC-AATGAA--CACGAATGCTCAGGG-GTGGCTAC--T  1139

seq1  TGGAATAAAGATGCTGGGGA  1169
      |||||| |||||||||||||
seq2  TGGAAT-AAGATGCTGGGGA  1158

seq1: chr14_104059142_104060125
seq2: B6Ng01-234I09.g_67_1050 (reverse)

seq1  CACACAGGCTTGCGACCTTGGGTTGTGAGGTTTAATTTCTGGTTCCTCCT  50
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  CACACAGGCTTGCGA-CTTTGGTTGTGAGGTTTAATTTCTGGTTCCTCCT  49

seq1  CATCTCCTTATA-TATTTTCTCAGCACAGCTTTCTAACTTGGCTTTTTAT  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTATATTATTTTCTCAGCACAGCTTTCTAACTTGGCTTTTTAT  99

seq1  GAATTATAGCATGCATAGATGTTTTTGTGATAGTGCTTATATGCAGGCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATAGCATGCATAGATGTTTTTGTGATAGTGCTTATATGCAGGCAT  149

seq1  TGCAATATCTTATCATATTTTGCATCTCACTTAGTTTTTACTTTGCTACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATCTTATCATATTTTGCATCTCACTTAGTTTTTACTTTGCTACA  199

seq1  CAAAGGTGATTTTCTCAGTTCTGTTCATCAGTTTACTCCAGACTCTCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGATTTTCTCAGTTCTGTTCATCAGTTTACTCCAGACTCTCTGG  249

seq1  GTCCTCTCTGAGTGTAAGGGGCCTGGTGTCCTGTCCTGTTCCTGGCCATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCTGAGTGTAAGGGGCCTGGTGTCCTGTCCTGTTCCTGGCCATG  299

seq1  CACTCTCTTCCATTCTTTTTAGTTCCAGATGTCTGTTGCCTTCCACAGCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTTCCATTCTTTTTAGTTCCAGATGTCTGTTGCCTTCCACAGCG  349

seq1  GCCATGGCAGGGTCTCCTCTGTCCCACGCTCACATCCTCCTGGCTTCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCAGGGTCTCCTCTGTCCCACGCTCACATCCTCCTGGCTTCTTC  399

seq1  TCGGTGGCTCCTCAGATGCCCGCCCTCTCTTCCAGCCTCTCCTCCTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGCTCCTCAGATGCCCGCCCTCTCTTCCAGCCTCTCCTCCTTTAT  449

seq1  TGGCCTGCCACCTTTACTTGCTGCTTGGGATGAGAATAGGCGAGGGAGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCCACCTTTACTTGCTGCTTGGGATGAGAATAGGCGAGGGAGTG  499

seq1  TGAGGGGCTGAACTTTGAGGGTGCCATTGTCTGTGTATCTTTGTCCCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCTGAACTTTGAGGGTGCCATTGTCTGTGTATCTTTGTCCCAGT  549

seq1  GGTTGGGGACACGCTGAGTTCTTAGGTCAATGTTCCCCAGAGGACGTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGGACACGCTGAGTTCTTAGGTCAATGTTCCCCAGAGGACGTAGA  599

seq1  AGGTGTCACCTTCAGGCCAGATGCTGCAGTAGCTGTAACGCTGTTCTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCACCTTCAGGCCAGATGCTGCAGTAGCTGTAACGCTGTTCTTCT  649

seq1  TAGGCGTTCTTTACATGTCTACTGCTTAAAATAACATGGGTGGGCGTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGTTCTTTACATGTCTACTGCTTAAAATAACATGGGTGGGCGTTTT  699

seq1  AGAGTATTGTCCTGTATTGGGGGCATTATGAATTTATCCTTTAATTCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATTGTCCTGTATTGGGGGCATTATGAATTTATCCTTTAATTCCTT  749

seq1  TGTGGTGCTCATGCAGAGTTACTTCCGATCTGGAAACTTTGCCTGCGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCTCATGCAGAGTTACTTCCGATCTGGAAACTTTGCCTGCGCAA  799

seq1  GCACCTGTTGCCTTATTTCTGTATAAGCTCTTTACCCGCAGCCCGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTTGCCTTATTTCTGTATAAGCTCTTTACCCGCAGCCCGTTTTC  849

seq1  TCTGTTCTTTCTGGGTCCTCCTGGTGGCCATGTGTTCAGTTTCCCTCAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTTCTGGGTCCTCCTGGTGGCCATGTGTTCAGTTTCCCTCAAC  899

seq1  CGATGGTCAAGATTTCTGTGTTTTCCTTTTGCTTTATCCTATCCTTGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTCAAGATTTCTGTGTTTTCCTTTTGCTTTATCCTATCCTTGAGT  949

seq1  TCCTCTTTATATTTCTCCTGGCATTTTAAGAATTC  984
      |||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTATATTTCTCCTGGCATTTTAAGAATTC  984