BAC Information

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BAC

Clone NameB6Ng01-234N02
Chromosome14 (Build37)
Map Location 93,913,885 - 93,951,212
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234N02.bB6Ng01-234N02.g
ACCGA046466GA046467
length1,1881,180
definitionB6Ng01-234N02.b B6Ng01-234N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,913,885 - 93,915,071)(93,950,029 - 93,951,212)
sequence
gaattccttttaaatgttttatttttcattattttgcactaaatacatcc
tgaatatataattaatgtataaattttatatttcatgtgaaacttttata
ttaattgaaaatgcaaaagtatcatcttcagtagaggacaaagaatgatt
gatgtctaaaaaacatataatcctgagaatgtatgatcaggaagagtgaa
cataaacaccaatcagatggaaagatatcctgcccaaggaggagtcccta
taggagactcaaaagcagcagatgatcagtcggtctttcctttattccta
aataatattctctcctcttccctacagtctcaatctgcttccctcctctc
cccttccagccaaaactctagagttctcccatttccgactgtagacattt
agccatgctttcaccttggagaagttcccatacagctaccaaaattcact
aagtcattgtagtcctctaaaaaaaaactgatatactgtatacattaata
caatgtcattacacatactattctcacccaacttgctgaaggtggctctg
taactcatgccattttctattcaattcatgttctctattgaataaacagg
tctagagggcgtgcttccagatcacctatctaaaattaacccttgggaac
ttaacttgatcccattttgataggaataaaaattgagaaatgtaaaactt
atttagatactaaaatactaagaagaatatttttgtttaaaagattagaa
aaacaaaacactactttacatttcagtatacatttcctaaattatgtgcg
atgttttgtagaaaagggaaggcagatggaatctactggtctgttagcta
ctaagcctttttacctaagactacctggatagtgtactgcttaaaagcaa
aaaggtaacacgtgtgtaaaggtgtggattcttcaattaaaaacagaatt
agatttgaaccttagaaatctactttcacctgtagacctcatcttatctg
attaaacgtttatttttttaaactacaaaagatgacgttattttaatggg
ttgttaaagagttatgtagtccaaagtgtgaataacatataactcagtaa
atgtttgccatttctgcaatacatgaatatgctattactataggctaatt
gtacattcgatatcaaggtgcaaggctatacaaagaac

cggaatttttatcttagggatatttgttttgatgttcaggtgtatcctct
ggatttctcagtatggtattatgggtcaatttctgatgtttgagagccac
taggaaaaacaaataactcatacttacatttatcatgtatcagacactct
tcaaaaacactttgattatactaactgaactaacagcaccatgggatgaa
atctcctatggctcctgtttacaaccaaaaaagatagaaatcatcactca
gcaaataaattgttgaaaagattttaggcaaaaatggctgtttgctgagc
ctataatctaaggattttgtcaaagagaacagagagtccagggtaaatgc
tggctgcttgactttcagtatgatacactattattctgcttcatcagtgt
ctctctctttttaggctaaattccagtcttgggtcagaattttctgactt
acattttatggatcatttgtctagtctgaatgaggtcacacatttcttct
cacaggagttagatttttaaatttgcggttcaatattagggcagccttcc
aagacactctacggcactgggttcgatccccagtactggtctgtaaaaac
aaaacaaaacaaaacaaaataaacaaacaaaactcctctcaatattttct
gttaataatttagaaatgcatatgaacacaaagtacatttaacaaatatg
tactaaatttatccatgtacatcagttgaaatcaatttcacgtaaaatta
ttcgacttcaagaatatttaaagaatatttaaagaggaccaattacgtgt
agtttattgtgccaatctctaccctaaatcatgaaagataccacttaaca
ggattttctagtattgtaatcaatattcttgaaatgttattagaatcatt
cgttaagaagatccttattgggctggagagatggctcagtggtaagaata
ctgattgctcttctagaagacctgagttcaattctcagccacctaataat
ggctcacaagcatctgttaatggttgttgcataaataattacatttaaaa
aagaaccttatcataaaatatggaaagttagatataatgacagagtgtgt
gttgcacatgtgaaagctatcacttaaaacgactgtagttcaagctatga
tgtaccatggcgtggtgtgccaagtgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93913885_93915071
seq2: B6Ng01-234N02.b_45_1232

seq1  GAATTCCTTTTAAATGTTTTATTTTTCATTATTTTGCACTAAATACATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTAAATGTTTTATTTTTCATTATTTTGCACTAAATACATCC  50

seq1  TGAATATATAATTAATGTATAAATTTTATATTTCATGTGAAACTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATAATTAATGTATAAATTTTATATTTCATGTGAAACTTTTATA  100

seq1  TTAATTGAAAATGCAAAAGTATCATCTTCAGTAGAGGACAAAGAATGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAAAATGCAAAAGTATCATCTTCAGTAGAGGACAAAGAATGATT  150

seq1  GATGTCTAAAAAACATATAATCCTGAGAATGTATGATCAGGAAGAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTAAAAAACATATAATCCTGAGAATGTATGATCAGGAAGAGTGAA  200

seq1  CATAAACACCAATCAGATGGAAAGATATCCTGCCCAAGGAGGAGTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACACCAATCAGATGGAAAGATATCCTGCCCAAGGAGGAGTCCCTA  250

seq1  TAGGAGACTCAAAAGCAGCAGATGATCAGTCGGTCTTTCCTTTATTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACTCAAAAGCAGCAGATGATCAGTCGGTCTTTCCTTTATTCCTA  300

seq1  AATAATATTCTCTCCTCTTCCCTACAGTCTCAATCTGCTTCCCTCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTCTCTCCTCTTCCCTACAGTCTCAATCTGCTTCCCTCCTCTC  350

seq1  CCCTTCCAGCCAAAACTCTAGAGTTCTCCCATTTCCGACTGTAGACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAGCCAAAACTCTAGAGTTCTCCCATTTCCGACTGTAGACATTT  400

seq1  AGCCATGCTTTCACCTTGGAGAAGTTCCCATACAGCTACCAAAATTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCTTTCACCTTGGAGAAGTTCCCATACAGCTACCAAAATTCACT  450

seq1  AAGTCATTGTAGTCCTCTAAAAAAAAACTGATATACTGTATACATTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTGTAGTCCTCTAAAAAAAAACTGATATACTGTATACATTAATA  500

seq1  CAATGTCATTACACATACTATTCTCACCCAACTTGCTGAAGGTGGCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCATTACACATACTATTCTCACCCAACTTGCTGAAGGTGGCTCTG  550

seq1  TAACTCATGCCATTTTCTATTCAATTCATGTTCTCTATTGAATAAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATGCCATTTTCTATTCAATTCATGTTCTCTATTGAATAAACAGG  600

seq1  TCTAGAGGGCGTGCTTCCAGATCACCTATCTAAAATTAACCCTTGGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGGCGTGCTTCCAGATCACCTATCTAAAATTAACCCTTGGGAAC  650

seq1  TTAACTTGATCCCATTTTGATAGGAATAAAAATTGAGAAATGTAAAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGATCCCATTTTGATAGGAATAAAAATTGAGAAATGTAAAACTT  700

seq1  ATTTAGATACTAAAATACTAAGAAGAATATTTTTGTTTAAAAGATTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATACTAAAATACTAAGAAGAATATTTTTGTTTAAAAGATTAGAA  750

seq1  AAACAAAACACTACTTTACATTTCAGTATACATTTCCTAAATTATGTGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACACTACTTTACATTTCAGTATACATTTCCTAAATTATGTGCG  800

seq1  ATGTTTTGTAGAAAAGGGAAGGCAGATGGAATCTACTGGTCTGTTAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTAGAAAAGGGAAGGCAGATGGAATCTACTGGTCTGTTAGCTA  850

seq1  CTAAGCCTTTTTACCTAAGACTACCTGGATAGTGTACTGCTTAAAAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTTTTTACCTAAGACTACCTGGATAGTGTACTGCTTAAAAGCAA  900

seq1  AAAGTTAACAACGTGTGTAAAGGTGTGGATTCTTCAATTAAAAACAGAAT  950
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAC-ACGTGTGTAAAGGTGTGGATTCTTCAATTAAAAACAGAAT  949

seq1  TAGATTTGAACCTTAGAAAATCTACTTTCACCTGTAGACCTCATCTTATC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGATTTGAACCTTAG-AAATCTACTTTCACCTGTAGACCTCATCTTATC  998

seq1  TGATTAAACGTTTA-TTTTTTAAACTACAAAAGATGACG-TATTT--AT-  1045
      |||||||||||||| |||||||||||||||||||||||| |||||  || 
seq2  TGATTAAACGTTTATTTTTTTAAACTACAAAAGATGACGTTATTTTAATG  1048

seq1  GGTTGTTAAAAGAG-TATGTAGTCCAAAGTGTG-ATAACATAATTACTCA  1093
      ||||||| |||||| |||||||||||||||||| ||||||| || |||||
seq2  GGTTGTT-AAAGAGTTATGTAGTCCAAAGTGTGAATAACAT-ATAACTCA  1096

seq1  GTAAATGTTTGCCATTTCTGCCATTACATGATTATTGTTATTACTATAGG  1143
      |||||||||||||||||||| || ||||||| || || ||||||||||||
seq2  GTAAATGTTTGCCATTTCTG-CAATACATGAATA-TGCTATTACTATAGG  1144

seq1  TTATATTTGTACCATTCG-TATCAAGGTGCAGGG--ATACAAAGAAC  1187
         || ||||| |||||| |||||||||||| ||  |||||||||||
seq2  --CTAATTGTA-CATTCGATATCAAGGTGCAAGGCTATACAAAGAAC  1188


seq1: chr14_93950029_93951212
seq2: B6Ng01-234N02.g_68_1244 (reverse)

seq1  GATACA--TGGCACA--ACG-CATGGTACCATCATAGGCTTTTGAACTAC  45
      ||||||  |||||||  ||| ||||||| ||||||||    |||||||||
seq2  GATACACTTGGCACACCACGCCATGGTA-CATCATAG---CTTGAACTAC  46

seq1  AGTCTGTTTTTATAAGTGATAGGCTTTTCACATGTGC-ACACACACTCTG  94
      |||| ||||   ||||||||||   |||||||||||| ||||||||||||
seq2  AGTC-GTTT---TAAGTGATAG--CTTTCACATGTGCAACACACACTCTG  90

seq1  TCATTATATCTAAACTTTTCATATTTTATGATAAGGTTCTTTTTTAAAAT  144
      ||||||||||| |||||| |||||||||||||||||||||||||| ||||
seq2  TCATTATATCT-AACTTTCCATATTTTATGATAAGGTTCTTTTTT-AAAT  138

seq1  GTTAATTTATTTATGC-ACAACCATT-ACAGATGCTTGTGAGCCATTATT  192
      ||  | |||||||||| ||||||||| |||||||||||||||||||||||
seq2  GT--AATTATTTATGCAACAACCATTAACAGATGCTTGTGAGCCATTATT  186

seq1  AGGTGGCTGAGAATTGAACTCAGGTCTTCTAGAAGAGCAATCAGTATTCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTGAGAATTGAACTCAGGTCTTCTAGAAGAGCAATCAGTATTCT  236

seq1  TACCCACTGAGCCATCTCTCCAGCCCAATAAGGATCTTCTTAACGAATGA  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-CCACTGAGCCATCTCTCCAGCCCAATAAGGATCTTCTTAACGAATGA  285

seq1  TTCTAATAACATTTCAAGAATATTGATTACAATACTAGAAAATCCTGTTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAACATTTCAAGAATATTGATTACAATACTAGAAAATCCTGTTA  335

seq1  AGTGGTATCTTTCATGATTTAGGGTAGAGATTGGCACAATAAACTACACG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATCTTTCATGATTTAGGGTAGAGATTGGCACAATAAACTACACG  385

seq1  TAATTGGTCCTCTTTAAATATTCTTTAAATATTCTTGAAGTCGAATAATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTCCTCTTTAAATATTCTTTAAATATTCTTGAAGTCGAATAATT  435

seq1  TTACGTGAAATTGATTTCAACTGATGTACATGGATAAATTTAGTACATAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGAAATTGATTTCAACTGATGTACATGGATAAATTTAGTACATAT  485

seq1  TTGTTAAATGTACTTTGTGTTCATATGCATTTCTAAATTATTAACAGAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATGTACTTTGTGTTCATATGCATTTCTAAATTATTAACAGAAA  535

seq1  ATATTGAGAGGAGTTTTGTTTGTTTATTTTGTTTTGTTTTGTTTTGTTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGAGGAGTTTTGTTTGTTTATTTTGTTTTGTTTTGTTTTGTTTT  585

seq1  TACAGACCAGTACTGGGGATCGAACCCAGTGCCGTAGAGTGTCTTGGAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACCAGTACTGGGGATCGAACCCAGTGCCGTAGAGTGTCTTGGAAG  635

seq1  GCTGCCCTAATATTGAACCGCAAATTTAAAAATCTAACTCCTGTGAGAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTAATATTGAACCGCAAATTTAAAAATCTAACTCCTGTGAGAAG  685

seq1  AAATGTGTGACCTCATTCAGACTAGACAAATGATCCATAAAATGTAAGTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGACCTCATTCAGACTAGACAAATGATCCATAAAATGTAAGTC  735

seq1  AGAAAATTCTGACCCAAGACTGGAATTTAGCCTAAAAAGAGAGAGACACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCTGACCCAAGACTGGAATTTAGCCTAAAAAGAGAGAGACACT  785

seq1  GATGAAGCAGAATAATAGTGTATCATACTGAAAGTCAAGCAGCCAGCATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGCAGAATAATAGTGTATCATACTGAAAGTCAAGCAGCCAGCATT  835

seq1  TACCCTGGACTCTCTGTTCTCTTTGACAAAATCCTTAGATTATAGGCTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGACTCTCTGTTCTCTTTGACAAAATCCTTAGATTATAGGCTCA  885

seq1  GCAAACAGCCATTTTTGCCTAAAATCTTTTCAACAATTTATTTGCTGAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGCCATTTTTGCCTAAAATCTTTTCAACAATTTATTTGCTGAGT  935

seq1  GATGATTTCTATCTTTTTTGGTTGTAAACAGGAGCCATAGGAGATTTCAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTCTATCTTTTTTGGTTGTAAACAGGAGCCATAGGAGATTTCAT  985

seq1  CCCATGGTGCTGTTAGTTCAGTTAGTATAATCAAAGTGTTTTTGAAGAGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTGCTGTTAGTTCAGTTAGTATAATCAAAGTGTTTTTGAAGAGT  1035

seq1  GTCTGATACATGATAAATGTAAGTATGAGTTATTTGTTTTTCCTAGTGGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATACATGATAAATGTAAGTATGAGTTATTTGTTTTTCCTAGTGGC  1085

seq1  TCTCAAACATCAGAAATTGACCCATAATACCATACTGAGAAATCCAGAGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACATCAGAAATTGACCCATAATACCATACTGAGAAATCCAGAGG  1135

seq1  ATACACCTGAACATCAAAACAAATATCCCTAAGATAAAAATT  1184
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTGAACATCAAAACAAATATCCCTAAGATAAAAATT  1177


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