BAC Information

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BAC

Clone NameB6Ng01-234P12
Chromosome14 (Build37)
Map Location 42,710,035 - 42,797,345
singlet/doubletdoublet
Overlap geneLOC666233, EG385234, LOC100041950, LOC100041910
Upstream geneTspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152
Downstream geneLOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234P12.bB6Ng01-234P12.g
ACCGA046570GA046571
length1,1751,106
definitionB6Ng01-234P12.b B6Ng01-234P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,796,175 - 42,797,345)(42,710,035 - 42,711,143)
sequence
gaattctagactctgggtctgtcattaagaaactccaaggctccagcttg
taagatctactcagggaaggctagctcaagcctacctgttccagaaattt
ccccaaccctgccaaggactcaccgtgtcttccccagaatgatttcattc
ttcctttttcataagaaaggatgccaaattccttctgccttggtctggtc
tctccttgatcgccattctccctgtgaaatagcctgagcagccgggaaaa
catgcctgatagagaataaaaaaggcactgaaggaatatcccacaagcag
cttttgtaaccacaacacaggtgatgtcatagaagattctagttctctca
tagatacaacagatggtccaaggaaggcattacttatgatgtcactggga
aaggctaaggcatatttgataactagttctccccaaattgaccagtttct
gttgtgcatttcctggagcctctcctgtgacttgggaaatacccttagca
atgtctctacttccaaatttaagagatttctcatctacttcattagaaaa
caagtgctttcgatgaaaagcattgattaggaccctgaaatgcataagag
gtttttgttagcacccaaatctctagggacagtgaatataagagctattt
ctcaataagaaatataccacctgagtaaattcatgtgacatacagtctac
ttccccaggttttccctgtttcacaaaggtcaatatctttctcctatacc
tttaattgtataaaacctggataatattttcttactgtgcatatcttgat
agtgggcattgttcccacatacatatccatgtgtttcacaaaatctcctg
tttacaatcccatcttttgcaggaaaactcccctttctttggaacatagg
ggctcaacgacaggacaaatataaaatggtaatcgttctgtcccatcttc
aaaatattaacttgcacaccctccctttctcaaatacaccagactattaa
agtgggcatcagtgagcaaaggtcaaccctgggactgtacaattactgca
ttgtagcctcctagccatcacttcctctaatatctgtcttttctgatcca
aggtgcaggcatgaagggatgctggggctgtaccataattacctttacct
catagccacacgagttacctcccta
gaattcattcactgtttttttgttttttaacattagaacttcataagttt
caatttttattcaagggaaaacaaaaagttacacaatttgacgtaaaatt
cctcccacatgacacatatcctttatgtaacactaaactcccagtttaga
gataaattcatattctaagaaattcacaaagatgattttgatttgcaact
gtggaatatgactgacagtataagtataaaatcactgggtccagccatga
gtcttgaatgctgtgttttcaggtgaagaaaattcaacaaaagattcaga
ctttggttcagtttgtaaactttgcacaaattttgttataatagcctgct
gccaacagaggaaattatccataaacaaaaacaaccttataattcattat
tattgttttgttttgtttatgtttttgtttttttcagagccgaggaagga
acccagggccttgcacttgctaggcaagcactctaccactgatctaaatc
cccaacccctagtttattattttaatgcaagccattgtaactcttctttg
ggtctgaatttttaatcatgtggtacgtaatgtgaaccataaccagggaa
agtacacaatgctaaattaacataaaacataagctgtagcagaagatgag
aaaggacaccaagagaggtcaaatctggtacagtctgcttcattgttttg
gggggttgtttttgacaacgtccaagtgatttttaatctaaaccatgata
tttctcatctgcttggtaacagttgttttctaacactataattaaaaata
ctacacagtatagaataaacacttgtgttataaactatttgccccttact
attttttgaataaattatttaattaaatgaatacatgacaccaagtgctt
gttcctgcagctatttattgactattatttttagatagataagcatatta
attacgagcaaattaaattgttttaaagagcattgctaagtgtgaacagt
cataaatggggggagctcctcactgtatcgtcgactaagagctactgatg
tagtgatgcttttatcaggtataaatctattatttgctttggtgtatggt
gatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42796175_42797345
seq2: B6Ng01-234P12.b_51_1225 (reverse)

seq1  TAGGGA-GTAACTCGTGTTTGCTATGA-GTAAAG--TATTATGGTACAAC  46
      |||||| |||||||||| | ||||||| ||||||   |||||||||| | 
seq2  TAGGGAGGTAACTCGTG-TGGCTATGAGGTAAAGGTAATTATGGTAC-AG  48

seq1  CCCCAGCATCC--TCATGCCTGCACTTGGGAATTCAG-AAAGACAGATAT  93
      |||||||||||  |||||||||||| | |||  |||| ||||||||||||
seq2  CCCCAGCATCCCTTCATGCCTGCACCTTGGA--TCAGAAAAGACAGATAT  96

seq1  TAGA-GAAGTGATGGCTAGGAGGCTACAATGCAGTAATTTGTACAGTCC-  141
      |||| |||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TAGAGGAAGTGATGGCTAGGAGGCTACAATGCAGTAA-TTGTACAGTCCC  145

seq1  -AGGTTGACCTTTGCTCACTGATGCCCACTTTAATAGTCTGGTTGTATTT  190
        |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGGTTGACCTTTGCTCACTGATGCCCACTTTAATAGTCTGG-TGTATTT  194

seq1  GAGAAAGGGAGGGTGTGCAAGTTAATATTTTGAAGATGGGACAGAACGAT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGAGGGTGTGCAAGTTAATATTTTGAAGATGGGACAGAACGAT  244

seq1  TACCATTTTATATTTGTCCTGTCGTTGAGCCCCTATGTTCCAAAGAAAGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTATATTTGTCCTGTCGTTGAGCCCCTATGTTCCAAAGAAAGG  294

seq1  GGAGTTTTCCTGCAAAAGATGGGATTGTAAACAGGAGATTTTGTGAAACA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTCCTGCAAAAGATGGGATTGTAAACAGGAGATTTTGTGAAACA  344

seq1  CATGGATATGTATGTGGGAACAATGCCCACTATCAAGATATGCACAGTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATATGTATGTGGGAACAATGCCCACTATCAAGATATGCACAGTAA  394

seq1  GAAAATATTATCCAGGTTTTATACAATTAAAGGTATAGGAGAAAGATATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTATCCAGGTTTTATACAATTAAAGGTATAGGAGAAAGATATT  444

seq1  GACCTTTGTGAAACAGGGAAAACCTGGGGAAGTAGACTGTATGTCACATG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGTGAAACAGGGAAAACCTGGGGAAGTAGACTGTATGTCACATG  494

seq1  AATTTACTCAGGTGGTATATTTCTTATTGAGAAATAGCTCTTATATTCAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTCAGGTGGTATATTTCTTATTGAGAAATAGCTCTTATATTCAC  544

seq1  TGTCCCTAGAGATTTGGGTGCTAACAAAAACCTCTTATGCATTTCAGGGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTAGAGATTTGGGTGCTAACAAAAACCTCTTATGCATTTCAGGGT  594

seq1  CCTAATCAATGCTTTTCATCGAAAGCACTTGTTTTCTAATGAAGTAGATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCAATGCTTTTCATCGAAAGCACTTGTTTTCTAATGAAGTAGATG  644

seq1  AGAAATCTCTTAAATTTGGAAGTAGAGACATTGCTAAGGGTATTTCCCAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCTTAAATTTGGAAGTAGAGACATTGCTAAGGGTATTTCCCAA  694

seq1  GTCACAGGAGAGGCTCCAGGAAATGCACAACAGAAACTGGTCAATTTGGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGAGAGGCTCCAGGAAATGCACAACAGAAACTGGTCAATTTGGG  744

seq1  GAGAACTAGTTATCAAATATGCCTTAGCCTTTCCCAGTGACATCATAAGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTAGTTATCAAATATGCCTTAGCCTTTCCCAGTGACATCATAAGT  794

seq1  AATGCCTTCCTTGGACCATCTGTTGTATCTATGAGAGAACTAGAATCTTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCCTTGGACCATCTGTTGTATCTATGAGAGAACTAGAATCTTC  844

seq1  TATGACATCACCTGTGTTGTGGTTACAAAAGCTGCTTGTGGGATATTCCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATCACCTGTGTTGTGGTTACAAAAGCTGCTTGTGGGATATTCCT  894

seq1  TCAGTGCCTTTTTTATTCTCTATCAGGCATGTTTTCCCGGCTGCTCAGGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTTTTTTATTCTCTATCAGGCATGTTTTCCCGGCTGCTCAGGC  944

seq1  TATTTCACAGGGAGAATGGCGATCAAGGAGAGACCAGACCAAGGCAGAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACAGGGAGAATGGCGATCAAGGAGAGACCAGACCAAGGCAGAAG  994

seq1  GAATTTGGCATCCTTTCTTATGAAAAAGGAAGAATGAAATCATTCTGGGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGCATCCTTTCTTATGAAAAAGGAAGAATGAAATCATTCTGGGG  1044

seq1  AAGACACGGTGAGTCCTTGGCAGGGTTGGGGAAATTTCTGGAACAGGTAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACGGTGAGTCCTTGGCAGGGTTGGGGAAATTTCTGGAACAGGTAG  1094

seq1  GCTTGAGCTAGCCTTCCCTGAGTAGATCTTACAAGCTGGAGCCTTGGAGT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCTAGCCTTCCCTGAGTAGATCTTACAAGCTGGAGCCTTGGAGT  1144

seq1  TTCTTAATGACAGACCCAGAGTCTAGAATTC  1171
      |||||||||||||||||||||||||||||||
seq2  TTCTTAATGACAGACCCAGAGTCTAGAATTC  1175

seq1: chr14_42710035_42711143
seq2: B6Ng01-234P12.g_64_1169

seq1  GAATTCATTCACTGTTTTTTTGTTTTTTAACATTAGAACTTCATAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACTGTTTTTTTGTTTTTTAACATTAGAACTTCATAAGTTT  50

seq1  CAATTTTTATTCAAGGGAAAACAAAAAGTTACACAATTTGACGTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTATTCAAGGGAAAACAAAAAGTTACACAATTTGACGTAAAATT  100

seq1  CCTCCCACATGACACATATCCTTTATGTAACACTAAACTCCCAGTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACATGACACATATCCTTTATGTAACACTAAACTCCCAGTTTAGA  150

seq1  GATAAATTCATATTCTAAGAAATTCACAAAGATGATTTTGATTTGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCATATTCTAAGAAATTCACAAAGATGATTTTGATTTGCAACT  200

seq1  GTGGAATATGACTGACAGTATAAGTATAAAATCACTGGGTCCAGCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATATGACTGACAGTATAAGTATAAAATCACTGGGTCCAGCCATGA  250

seq1  GTCTTGAATGCTGTGTTTTCAGGTGAAGAAAATTCAACAAAAGATTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATGCTGTGTTTTCAGGTGAAGAAAATTCAACAAAAGATTCAGA  300

seq1  CTTTGGTTCAGTTTGTAAACTTTGCACAAATTTTGTTATAATAGCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTCAGTTTGTAAACTTTGCACAAATTTTGTTATAATAGCCTGCT  350

seq1  GCCAACAGAGGAAATTATCCATAAACAAAAACAACCTTATAATTCATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGAGGAAATTATCCATAAACAAAAACAACCTTATAATTCATTAT  400

seq1  TATTGTTTTGTTTTGTTTATGTTTTTGTTTTTTTCAGAGCCGAGGAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTGTTTTGTTTATGTTTTTGTTTTTTTCAGAGCCGAGGAAGGA  450

seq1  ACCCAGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGATCTAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGATCTAAATC  500

seq1  CCCAACCCCTAGTTTATTATTTTAATGCAAGCCATTGTAACTCTTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCCTAGTTTATTATTTTAATGCAAGCCATTGTAACTCTTCTTTG  550

seq1  GGTCTGAATTTTTAATCATGTGGTACGTAATGTGAACCATAACCAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAATTTTTAATCATGTGGTACGTAATGTGAACCATAACCAGGGAA  600

seq1  AGTACACAATGCTAAATTAACATAAAACATAAGCTGTAGCAGAAGATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAATGCTAAATTAACATAAAACATAAGCTGTAGCAGAAGATGAG  650

seq1  AAAGGACACCAAGAGAGGTCAAATCTGGTACAGTCTGCTTCATTGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACACCAAGAGAGGTCAAATCTGGTACAGTCTGCTTCATTGTTTTG  700

seq1  GGGGGTTGTTTTTGACAACGTCCAAGTGATTTTTAATCTAAACCATGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGTTTTTGACAACGTCCAAGTGATTTTTAATCTAAACCATGATA  750

seq1  TTTCTCATCTGCTTGGTAACAGTTGTTTTCTAACACTATAATTAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTGCTTGGTAACAGTTGTTTTCTAACACTATAATTAAAAATA  800

seq1  CTACACAGTATAGAATAAACACTTGTGTTATAAACTATTTGCCCCTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTATAGAATAAACACTTGTGTTATAAACTATTTGCCCCTTACT  850

seq1  ATTTTTTGAATAAATTATTTAATTAAATGAATACATGACACCAAGTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAATAAATTATTTAATTAAATGAATACATGACACCAAGTGCTT  900

seq1  GTTCCTGCAGCTATTTATTGACTATTATTTTTAGATAAGATAAGCATATT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTCCTGCAGCTATTTATTGACTATTATTTTTAGAT-AGATAAGCATATT  949

seq1  AATTACGAGCAAA-TAAATTGTTTTAAAGAGCATTGCTAAGTGTGAACAG  999
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTACGAGCAAATTAAATTGTTTTAAAGAGCATTGCTAAGTGTGAACAG  999

seq1  TCATAAAATGGGGGAGGCTCTCACTTGTATCGTCGACTAAGAGCCTACTG  1049
      |||||||  |||||||   ||||| |||||||||||||||||| ||||||
seq2  TCATAAATGGGGGGAGCTCCTCAC-TGTATCGTCGACTAAGAG-CTACTG  1047

seq1  ATTGGTAGTGATGCTTTTATCA-GTATAAAATCTAATAATTTGCTTT-GT  1097
      ||  |||||||||||||||||| |||| |||||| || ||||||||| ||
seq2  AT--GTAGTGATGCTTTTATCAGGTAT-AAATCT-ATTATTTGCTTTGGT  1093

seq1  GTAT-GTGATATA  1109
      |||| ||||||||
seq2  GTATGGTGATATA  1106