BAC Information

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BAC

Clone NameB6Ng01-235A11
Chromosome14 (Build37)
Map Location 66,477,575 - 66,608,304
singlet/doubletdoublet
Overlap geneCcdc25, Scara3, Clu, Gulo
Upstream geneHmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2
Downstream geneAdam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235A11.bB6Ng01-235A11.g
ACCGA046614GA046615
length946737
definitionB6Ng01-235A11.b B6Ng01-235A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,477,575 - 66,478,527)(66,607,571 - 66,608,304)
sequence
gaattctacatcttgaacccaaggcagctgggagagagtgacattaggcc
cggcttgaccatttgagaccccaaatccccacccccagtgacacacttcc
tccagtgaggccacacctccaaatactgccactctctatgagccttcagg
tagggggtgtgggtggcatcattttcatttaaaccaccacagcagctaat
tcttggttttagtttggagtaggggaaaactgaagaaaatatgcccttct
gtttccttcacatctttaactgctttgtttagaaacatggttgtcttgtg
ttagaaacacgacctcacttcatttacagcttgctaaggaggaacggctg
atacgttaacatttgccatctgactgacactcttcttgaaagtgcttctt
gcatggcctcattcagcagtgacgtagttctgttacctggatttgtaaaa
ggagagtgagagcctgaacagcacctaagcatcttgctgggagttatagc
tacgtgtgtcgtctgattctcaaatcaacacattacaaagctctgttgtc
ttctagctgattcattttatacaatatttattcagaatgagttgagtaat
atagagattctgtgattcgtgctggaggtagagctgccctctgaccccca
cgggtatgctgcacttacccacatacacataagacaatttcttttttaag
tttcaagcagaagtgaggaggctttgagtgagtgagtcagtgagtttgtt
ttttttttttttttgagacagcatgtctcacacttggtggctgtctccta
ccgcagccttcctgagtggtagttttgtaggcaatgggcccagatgacag
gcatgaacttagctggctacttgtgtttataagaactcttttgcctggtg
ggtatagagggacccaaaggcagggagccagatgttagtgattggc
gaattcagtttttagggggcctcaaagagtcacaaacacttttctgaaag
actcactgaaggaactgtcgtctcgttcatggaggatgtagctatggtaa
agcttgtgtgtcagctgtctgtgtgtctcagcttctcaatcctcaaacgc
aaatgcagaagtgagggatgccacgggatgcatctgaatgcgtttgaagt
gttagcgctgacgtcagctttggagatcagtcaccatggggctgagtagc
cgggcaagagaccaactggagagcttcattaggttacacagccttgcttt
ctagacatggataaagtcatctggggattccacagcactggccaaagtac
catatgtgtgtgatatgtgtgagcatggtatgtgactagtatgggggggt
gctgtgcatatttcatgcacattatgtatgtgtgtattgtgtgtgaatac
tagatgtgtaactattgtgtgtgttgcatttaagtattaagtattgtgta
aaagtatgatatttcaaatttgtgcattgtgtgtctattatatgaatact
gtatgtatgaacagtgtgtgggtattgtgtgacagtctagagttgcttgc
aatgaggaaatattctggcaaacacacccattaacaattttataacaata
aacatcacccctgcacagcacccccctgcttgtcctaggctgcatgcctg
tacaatacattgtatctattgtatatatgatggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66477575_66478527
seq2: B6Ng01-235A11.b_47_992

seq1  GAATTCTACATCTTGAACCCAAGGCAGCTGGGAGAGAGTGACATTAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTGAACCCAAGGCAGCTGGGAGAGAGTGACATTAGGCC  50

seq1  CGGCTTGACCATTTGAGACCCCAAATCCCCACCCCCAGTGACACACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTGACCATTTGAGACCCCAAATCCCCACCCCCAGTGACACACTTCC  100

seq1  TCCAGTGAGGCCACACCTCCAAATACTGCCACTCTCTATGAGCCTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGAGGCCACACCTCCAAATACTGCCACTCTCTATGAGCCTTCAGG  150

seq1  TAGGGGGTGTGGGTGGCATCATTTTCATTTAAACCACCACAGCAGCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGTGTGGGTGGCATCATTTTCATTTAAACCACCACAGCAGCTAAT  200

seq1  TCTTGGTTTTAGTTTGGAGTAGGGGAAAACTGAAGAAAATATGCCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTTAGTTTGGAGTAGGGGAAAACTGAAGAAAATATGCCCTTCT  250

seq1  GTTTCCTTCACATCTTTAACTGCTTTGTTTAGAAACATGGTTGTCTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTCACATCTTTAACTGCTTTGTTTAGAAACATGGTTGTCTTGTG  300

seq1  TTAGAAACACGACCTCACTTCATTTACAGCTTGCTAAGGAGGAACGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACGACCTCACTTCATTTACAGCTTGCTAAGGAGGAACGGCTG  350

seq1  ATACGTTAACATTTGCCATCTGACTGACACTCTTCTTGAAAGTGCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTAACATTTGCCATCTGACTGACACTCTTCTTGAAAGTGCTTCTT  400

seq1  GCATGGCCTCATTCAGCAGTGACGTAGTTCTGTTACCTGGATTTGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCTCATTCAGCAGTGACGTAGTTCTGTTACCTGGATTTGTAAAA  450

seq1  GGAGAGTGAGAGCCTGAACAGCACCTAAGCATCTTGCTGGGAGTTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGAGAGCCTGAACAGCACCTAAGCATCTTGCTGGGAGTTATAGC  500

seq1  TACGTGTGTCGTCTGATTCTCAAATCAACACATTACAAAGCTCTGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGTGTCGTCTGATTCTCAAATCAACACATTACAAAGCTCTGTTGTC  550

seq1  TTCTAGCTGATTCATTTTATACAATATTTATTCAGAATGAGTTGAGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTGATTCATTTTATACAATATTTATTCAGAATGAGTTGAGTAAT  600

seq1  ATAGAGATTCTGTGATTCGTGCTGGAGGTAGAGCTGCCCTCTGACCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATTCTGTGATTCGTGCTGGAGGTAGAGCTGCCCTCTGACCCCCA  650

seq1  CGGGTATGCTGCACTTACCCACATACACATAAGACAATTTCTTTTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTATGCTGCACTTACCCACATACACATAAGACAATTTCTTTTTTAAG  700

seq1  TTTCAAGCAGAAGTGAGGAGGCTTTGAGTGAGTGAGTCAGTGAGTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTTCAAGCAGAAGTGAGGAGGCTTTGAGTGAGTGAGTCAGTGAGTTTG--  748

seq1  TTTTTTTTTTTTTTTTTTTGAGACAGCATGTCTCACACTTGGTGGCTGTC  800
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ---TTTTTTTTTTTTTTTTGAGACAGCATGTCTCACACTTGGTGGCTGTC  795

seq1  TCCTACCGCAGCC-TCCTGAGTGGTAGTTTTGTAGGC-ATGGGCCCAGAT  848
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TCCTACCGCAGCCTTCCTGAGTGGTAGTTTTGTAGGCAATGGGCCCAGAT  845

seq1  GACAGGCATGAACTTAGCTGGCTACTTGTGTTTTAGTAAGAGCTC-TTTG  897
      |||||||||||||||||||||||||||||||||   ||||| ||| ||||
seq2  GACAGGCATGAACTTAGCTGGCTACTTGTGTTT--ATAAGAACTCTTTTG  893

seq1  CCTGGTGGGTTATAGAGGGACCCAGAGGCAGGGGAGCCAGAAGTTAAGTG  947
      ||||||||| |||||||||||||| ||||| |||||||||| ||| ||||
seq2  CCTGGTGGG-TATAGAGGGACCCAAAGGCA-GGGAGCCAGATGTT-AGTG  940

seq1  ATTGGC  953
      ||||||
seq2  ATTGGC  946

seq1: chr14_66607571_66608304
seq2: B6Ng01-235A11.g_66_801 (reverse)

seq1  CCACCATCATATATACAATAGATACAATGTATTGTACAGGCATGCAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATCATATATACAATAGATACAATGTATTGTACAGGCATGCAGCCT  50

seq1  AGGACAAGCAGGGGGGTGCTGTGCA-GGGTGATGTTTATTGTTATAAAAT  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGACAAGCAGGGGGGTGCTGTGCAGGGGTGATGTTTATTGTTATAAAAT  100

seq1  TGTTAAT-GGTGTGTTTGCCAGAATATTTCCTCATTGCAAGCAACTCTCG  148
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TGTTAATGGGTGTGTTTGCCAGAATATTTCCTCATTGCAAGCAACTCTAG  150

seq1  ACTGTCACACAATACCCACACACTGTTCATACATACAGTATTCATATAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACACAATACCCACACACTGTTCATACATACAGTATTCATATAAT  200

seq1  AGACACACAATGCACAAATTTGAAATATCATACTTTTACACAATACTTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACAATGCACAAATTTGAAATATCATACTTTTACACAATACTTAA  250

seq1  TACTTAAATGCAACACACACAATAGTTACACATCTAGTATTCACACACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATGCAACACACACAATAGTTACACATCTAGTATTCACACACAA  300

seq1  TACACACATACATAATGTGCATGAAATATGCACAGCACCCCCCCATACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATACATAATGTGCATGAAATATGCACAGCACCCCCCCATACTA  350

seq1  GTCACATACCATGCTCACACATATCACACACATATGGTACTTTGGCCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATACCATGCTCACACATATCACACACATATGGTACTTTGGCCAGT  400

seq1  GCTGTGGAATCCCCAGATGACTTTATCCATGTCTAGAAAGCAAGGCTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAATCCCCAGATGACTTTATCCATGTCTAGAAAGCAAGGCTGTG  450

seq1  TAACCTAATGAAGCTCTCCAGTTGGTCTCTTGCCCGGCTACTCAGCCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAATGAAGCTCTCCAGTTGGTCTCTTGCCCGGCTACTCAGCCCCA  500

seq1  TGGTGACTGATCTCCAAAGCTGACGTCAGCGCTAACACTTCAAACGCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGATCTCCAAAGCTGACGTCAGCGCTAACACTTCAAACGCATT  550

seq1  CAGATGCATCCCGTGGCATCCCTCACTTCTGCATTTGCGTTTGAGGATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCATCCCGTGGCATCCCTCACTTCTGCATTTGCGTTTGAGGATTG  600

seq1  AGAAGCTGAGACACACAGACAGCTGACACACAAGCTTTACCATAGCTACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAGACACACAGACAGCTGACACACAAGCTTTACCATAGCTACA  650

seq1  TCCTCCATGAACGAGACGACAGTTCCTTCAGTGAGTCTTTCAGAAAAGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATGAACGAGACGACAGTTCCTTCAGTGAGTCTTTCAGAAAAGTG  700

seq1  TTTGTGACTCTTTGAGGCCCCCTAAAAACTGAATTC  734
      ||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTCTTTGAGGCCCCCTAAAAACTGAATTC  736