BAC Information

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BAC

Clone NameB6Ng01-235C16
Chromosome14 (Build37)
Map Location 43,093,001 - 43,247,690
singlet/doubletdoublet
Overlap geneEG666285, LOC666298, LOC100042031
Upstream geneLOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280
Downstream geneEG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235C16.bB6Ng01-235C16.g
ACCGA046715GA046716
length1,1271,131
definitionB6Ng01-235C16.b B6Ng01-235C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,093,001 - 43,094,134)(43,246,563 - 43,247,690)
sequence
gaattccaaaacattgaatcattcctacatcctatacatgatgcatattg
gatcatggtgagtgatcatttgcatgtgttattagaaacagattccaaga
cgttattgagtatttttgcatcaatatttgttatgtttttttatgctcaa
cccactgagtggcaacataagaaggagtggccaagttagagtatattgga
cactgtgtgtgtggtcaaaaccctcaccctagctgcctggacattaatgt
tctattagcagccttcacatgaacatgtaggactctcagcttctcctgta
ccatgcctttctggatgcgtccatgtggccaccttgttggtacttgactg
atcctcttaacctgtaaggcatccacattgaattctaggagaagctgcag
tgcagccatatttggaggagtcccaaaaccctcctgggacaactagtcat
ggagtttgttcagcagccatctgtctgcagcagttagggtgttcttcaga
gtcacatctcttctctaaagctttgaagaaccacctgtctgagggccaga
agctcttgtgagtatctgctgatgcagagttagaaacagctctactaagt
actcagcctgatgcatggagtcctaaggggagacacagcaaatacagagg
tctgaaggaaaggacaaagtacccaaaatctgagtatccaaggctgtatc
ctcagattagaaagagaacagaaaaaatggagagggaacccagtaagtag
caatggggagaagggaggccaggtgttcctggtggtcatgaactctgcac
agagttcagagtaaattacaatgtggattatgaaagtggaaaatgtttca
ctttctttttattacattcaccttgtttgggcagataatccatgcaggaa
ggctgagaaagggctaagaaagaaagttgatctcagagaaacaggaggac
tgggggttctctagtgtagtatactgtagtgtggtgttgtgcagtgtgtt
gtgttgaagttacagtgtattctctgtatgtttgctgctagtatacatga
gccctggctccctctttagtttagccacttgaagaagctgaaattgaata
acagtggcagatcttagacgatgttgg
gaattcacatgctcctgtaatagtcatgcccaccaaattaatgagagtca
caactatattgctcttaggagatgcattttcatttggggctcataagaaa
ttaggaaacccagagctatctgcttctcatttcctggaaatacagcattg
gtgataactgtaaagcagaaatattgacttcccagaaaaaaagacttccc
aaatacccatgttgagatttcccagacatgttgagacatggctttctttt
taggtaattttattgtggctacacacttggaacctttttgagttttgttt
atttgggtgaatttagagcgttgctatttatttcttttgtttatacgtat
tttttgcctgctagatgtctttgcaccaaatgcatgcaattcctccatag
gccacaagaaggcatggtattcaacccagagatgcattaatgtgatagtt
agctaccctcggggccctctggtggatagacaaatgctcttaatagaaga
gcattctttcctgtccctaccctacatttcttctttgtccttccagattg
tgtggtttttaattgaacaagatcatccacaatcaaagatagaagtttct
ggagacctataggttcaggtgcttgaagatggaatggtaattttcgtagg
ttacctggcacccatgcagagctcttgtgggttcaagataataccataac
ttatcgtcaaggttggagcagatctgtcacctctcgtctaggataaccat
gcagattagtcgtgaaatgcctaattgatgaacagcagaattgagaagtt
cctcctgggtgtagaggtagaggaaggaataactatttaaggccagctaa
ccagtgttgggatgaagttcaaactatcctgcatggatggatcctgaggc
aaacatcatatgcctatagtggagagcttgtctgtgcaaggctaaaaggg
agagcgttgggttgatattgatgtttaaccacagtagatctcagagtgtg
ttgagaaatcttctcagtggatgcttcatgcttgtgaaggtctcctggaa
cagaatctgatttgaagactgtgagtcagagaattaaatggtgtgaaagg
gaattaactcccctggaatctccaaactgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43093001_43094134
seq2: B6Ng01-235C16.b_46_1172

seq1  GAATTCCAAAACATTGAATCATTCCTACATCCTATACATGATGCATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACATTGAATCATTCCTACATCCTATACATGATGCATATTG  50

seq1  GATCATGGTGAGTGATCATTTGCATGTGTTATTAGAAACAGATTCCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGTGAGTGATCATTTGCATGTGTTATTAGAAACAGATTCCAAGA  100

seq1  CGTTATTGAGTATTTTTGCATCAATATTTGTTATGTTTTTTTATGCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTGAGTATTTTTGCATCAATATTTGTTATGTTTTTTTATGCTCAA  150

seq1  CCCACTGAGTGGCAACATAAGAAGGAGTGGCCAAGTTAGAGTATATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGTGGCAACATAAGAAGGAGTGGCCAAGTTAGAGTATATTGGA  200

seq1  CACTGTGTGTGTGGTCAAAACCCTCACCCTAGCTGCCTGGACATTAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTGTGTGGTCAAAACCCTCACCCTAGCTGCCTGGACATTAATGT  250

seq1  TCTATTAGCAGCCTTCACATGAACATGTAGGACTCTCAGCTTCTCCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAGCAGCCTTCACATGAACATGTAGGACTCTCAGCTTCTCCTGTA  300

seq1  CCATGCCTTTCTGGATGCGTCCATGTGGCCACCTTGTTGGTACTTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTTTCTGGATGCGTCCATGTGGCCACCTTGTTGGTACTTGACTG  350

seq1  ATCCTCTTAACCTGTAAGGCATCCACATTGAATTCTAGGAGAAGCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTAACCTGTAAGGCATCCACATTGAATTCTAGGAGAAGCTGCAG  400

seq1  TGCAGCCATATTTGGAGGAGTCCCAAAACCCTCCTGGGACAACTAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCATATTTGGAGGAGTCCCAAAACCCTCCTGGGACAACTAGTCAT  450

seq1  GGAGTTTGTTCAGCAGCCATCTGTCTGCAGCAGTTAGGGTGTTCTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGTTCAGCAGCCATCTGTCTGCAGCAGTTAGGGTGTTCTTCAGA  500

seq1  GTCACATCTCTTCTCTAAAGCTTTGAAGAACCACCTGTCTGAGGGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCTCTTCTCTAAAGCTTTGAAGAACCACCTGTCTGAGGGCCAGA  550

seq1  AGCTCTTGTGAGTATCTGCTGATGCAGAGTTAGAAACAGCTCTACTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTGAGTATCTGCTGATGCAGAGTTAGAAACAGCTCTACTAAGT  600

seq1  ACTCAGCCTGATGCATGGAGTCCTAAGGGGAGACACAGCAAATACAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTGATGCATGGAGTCCTAAGGGGAGACACAGCAAATACAGAGG  650

seq1  TCTGAAGGAAAGGACAAAGTACCCAAAATCTGAGTATCCAAGGCTGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAAAGGACAAAGTACCCAAAATCTGAGTATCCAAGGCTGTATC  700

seq1  CTCAGATTAGAAAGAGAACAGAAAAAATGGAGAGGGAACCCAGTAAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTAGAAAGAGAACAGAAAAAATGGAGAGGGAACCCAGTAAGTAG  750

seq1  CAATGGGGAGAAGGGAGGCCAGGTGTTCCTGGTGGTCATGAACTCTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGAGAAGGGAGGCCAGGTGTTCCTGGTGGTCATGAACTCTGCAC  800

seq1  AGAGTTCAGAGTAAATTACAATGTGGATTATGAAAGTGGAAAATG-TTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGTTCAGAGTAAATTACAATGTGGATTATGAAAGTGGAAAATGTTTCA  850

seq1  CTTTC-TTTTATTACATTCACCTTGTTTGGGCAGATAATCCATGCAGGAA  898
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTATTACATTCACCTTGTTTGGGCAGATAATCCATGCAGGAA  900

seq1  GGCTGAGAAAGGGCTAAGAAAGAAAGTTGATCTCAGAGAAACAGGAGGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAAAGGGCTAAGAAAGAAAGTTGATCTCAGAGAAACAGGAGGAC  950

seq1  TGGGGGTTCTCTAGTGTAGTATACTGTAGTGTGGTGTGGTGCAGTGTGTT  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGGGGTTCTCTAGTGTAGTATACTGTAGTGTGGTGTTGTGCAGTGTGTT  1000

seq1  GTGGTGAAG-TACAGTGTATTCTCCTGTAGTGTTTGCTGCTTGGTATACA  1047
      ||| ||||| ||||||||||||| ||||| |||||||||| | |||||||
seq2  GTGTTGAAGTTACAGTGTATTCT-CTGTA-TGTTTGCTGC-TAGTATACA  1047

seq1  TGAGGCCCTGGGCTCCCTCTTCAGTTTAGCCCACTTAGAGAAGCTGAAAT  1097
      ||| ||||| ||||||||||| ||||||| ||||||  ||||||||||||
seq2  TGA-GCCCT-GGCTCCCTCTTTAGTTTAG-CCACTTGAAGAAGCTGAAAT  1094

seq1  TAGAATAACAGTTGCCAGATCTTAAGACAGATGTTGG  1134
      | ||||||||| || |||||||| |||| ||||||||
seq2  T-GAATAACAG-TGGCAGATCTT-AGAC-GATGTTGG  1127

seq1: chr14_43246563_43247690
seq2: B6Ng01-235C16.g_65_1195 (reverse)

seq1  AGCAGTTTGGGGA-TCCAGGGGA-TTAATTCC--TTCACAC--ATTAATT  44
      |||||||||| || ||||||||| ||||||||  |||||||   ||||||
seq2  AGCAGTTTGGAGATTCCAGGGGAGTTAATTCCCTTTCACACCATTTAATT  50

seq1  CTCTGACTCACAGTC-TCAAATCAGA-TCTGTTCCAGGAGACCTTCACAA  92
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  CTCTGACTCACAGTCTTCAAATCAGATTCTGTTCCAGGAGACCTTCACAA  100

seq1  GCATGAAGCATCCACTGGAAGAAAGATTTCTTCAACACACTCTGAGATCT  142
      |||||||||||||||||  || |||||||| |||||||||||||||||||
seq2  GCATGAAGCATCCACTG--AG-AAGATTTC-TCAACACACTCTGAGATCT  146

seq1  ACTGTGGTTAAACATCAATATCAA-CCAACGCTCTCCCTTTTTAGCCTTG  191
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  ACTGTGGTTAAACATCAATATCAACCCAACGCTCTCCC-TTTTAGCCTTG  195

seq1  CACAGACAAGCTCTCCACTATAGGCATATGATGTTTGCCTCAGGATCCAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAAGCTCTCCACTATAGGCATATGATGTTTGCCTCAGGATCCAT  245

seq1  CCATGCAGGATAGTTTGAAACTTCATCCCAACACTGGTTAGCTGGCCTTA  291
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATGCAGGATAGTTTG-AACTTCATCCCAACACTGGTTAGCTGGCCTTA  294

seq1  AATAGTTATTCCTTCCTCTACCTCTACACCCAGGAGGAACTTCTCAATTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTATTCCTTCCTCTACCTCTACACCCAGGAGGAACTTCTCAATTC  344

seq1  TGCTGTTCATCAATTAGGCATTTCACGACTAATCTGCATGGTTATCCTAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCATCAATTAGGCATTTCACGACTAATCTGCATGGTTATCCTAG  394

seq1  ACGAGAGGTGACAGATCTGCTCCAACCTTGACGATAAGTTATGGTATTAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGGTGACAGATCTGCTCCAACCTTGACGATAAGTTATGGTATTAT  444

seq1  CTTGAACCCACAAGAGCTCTGCATGGGTGCCAGGTAACCTACGAAAATTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCCACAAGAGCTCTGCATGGGTGCCAGGTAACCTACGAAAATTA  494

seq1  CCATTCCATCTTCAAGCACCTGAACCTATAGGTCTCCAGAAACTTCTATC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCATCTTCAAGCACCTGAACCTATAGGTCTCCAGAAACTTCTATC  544

seq1  TTTGATTGTGGATGATCTTGTTCAATTAAAAACCACACAATCTGGAAGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGTGGATGATCTTGTTCAATTAAAAACCACACAATCTGGAAGGA  594

seq1  CAAAGAAGAAATGTAGGGTAGGGACAGGAAAGAATGCTCTTCTATTAAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAAATGTAGGGTAGGGACAGGAAAGAATGCTCTTCTATTAAGA  644

seq1  GCATTTGTCTATCCACCAGAGGGCCCCGAGGGTAGCTAACTATCACATTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCTATCCACCAGAGGGCCCCGAGGGTAGCTAACTATCACATTA  694

seq1  ATGCATCTCTGGGTTGAATACCATGCCTTCTTGTGGCCTATGGAGGAATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTCTGGGTTGAATACCATGCCTTCTTGTGGCCTATGGAGGAATT  744

seq1  GCATGCATTTGGTGCAAAGACATCTAGCAGGCAAAAAATACGTATAAACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTTGGTGCAAAGACATCTAGCAGGCAAAAAATACGTATAAACA  794

seq1  AAAGAAATAAATAGCAACGCTCTAAATTCACCCAAATAAACAAAACTCAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAAATAGCAACGCTCTAAATTCACCCAAATAAACAAAACTCAA  844

seq1  AAAGGTTCCAAGTGTGTAGCCACAATAAAATTACCTAAAAAGAAAGCCAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCCAAGTGTGTAGCCACAATAAAATTACCTAAAAAGAAAGCCAT  894

seq1  GTCTCAACATGTCTGGGAAATCTCAACATGGGTATTTGGGAAGTCTTTTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACATGTCTGGGAAATCTCAACATGGGTATTTGGGAAGTCTTTTT  944

seq1  TTCTGGGAAGTCAATATTTCTGCTTTACAGTTATCACCAATGCTGTATTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAGTCAATATTTCTGCTTTACAGTTATCACCAATGCTGTATTT  994

seq1  CCAGGAAATGAGAAGCAGATAGCTCTGGGTTTCCTAATTTCTTATGAGCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATGAGAAGCAGATAGCTCTGGGTTTCCTAATTTCTTATGAGCC  1044

seq1  CCAAATGAAAATGCATCTCCTAAGAGCAATATAGTTGTGACTCTCATTAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAAAATGCATCTCCTAAGAGCAATATAGTTGTGACTCTCATTAA  1094

seq1  TTTGGTGGGCATGACTATTACAGGAGCATGTGAATTC  1128
      |||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGGCATGACTATTACAGGAGCATGTGAATTC  1131