BAC Information

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BAC

Clone NameB6Ng01-235M14
Chromosome14 (Build37)
Map Location 24,096,209 - 24,215,374
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235M14.bB6Ng01-235M14.g
ACCGA047173GA047174
length1,060480
definitionB6Ng01-235M14.b B6Ng01-235M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,214,317 - 24,215,374)(24,096,209 - 24,096,694)
sequence
gaattctagggcccttgacacaatggactccacagcagatatggtgttta
tggatgacctgataatggtaatattaatgatctttatttatataatacat
ggtttagaaaacagctctatgtagacacagttggattcggggctggtctt
tagaaggcagaatcagcccaccaagcactaattttaacaacagaaatagc
agagtgaaaacggaaataaaagtatgattgacatctgctactcatattca
tgtgaagctgtttagcggggagggggaaaacaggaagagggtgagatatc
agttaaagcatacgagctaataggaactcgcaacccaaactgaaaatgta
aaccagcatagcagtaactgggagcggtggatgtggggttgcactgatgt
ctgcaagagttctgacaccctctcacttttttgtttctcaccctgggcag
gtggcaagactcaggttccaaggcagcatgatcctttctccactcctctg
gctatctgacaatttgtaaacccaggaggaagcctgtgttgcacaggctg
tccttagcaatctcatgcacacagtgtgaagtgatccaaagaaataagcc
actggttgtttacctcatagcattctgtggggtggtgggaacagccactc
gaatgaatgcccttgagaaatgcgcagggccagggtagggagagggtgca
gtcagttttaagagcatatctggaatctcagaagtcaagaacgtcatcta
atatctttaaataatgaaaatagaggaaagatcataatgaacgaaatctc
atctttttgaaaggatgacctagtaaacaaggtttaatgccagtgtttag
cctttggaatctaacagggaggaaaccaaaatgggcagcagtaagctggg
agcttcacttacccatgtgagtccttttaaggtgcagagagcagtggctg
gcaccttaacaggggtttcctcatgatgatataaatgaaacctacacagg
taataattaaggcatacttatgaagaagtttgttttcaggtaccccacat
tctgttacat

aaatgaagtatcagaatatgcacacagaccacacttccccccccccttgc
ctatccagagaaatcatttgagtcttgtgtgcagcattaggccactgtca
ttaacagcactggcgtcattttcatgttcactgtgaggcagtaggcactt
tgaagttgaaagctagaacagacatggataaatactactccaaggggctg
ccactgcaccgttattgcaagcaattatttctcagagtgacacatctgat
aaaaagtcagccaccttcttctagaaagtgtctcagtagatacaatgaag
aactcctgtttgatttcttcttttaaatggacagaagattgcttctctct
ctctctctctctctctctctctctctctctctctctctctctctctctct
gtctctctttattttttttttcccgctcccccccgtcccttctcctctct
gtatcacttctcgttctgattctgtccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24214317_24215374
seq2: B6Ng01-235M14.b_46_1105 (reverse)

seq1  ATGTAACAGAATGTGGGGTACCTGAAAACAAACTTCCTTCT-AGTATGCC  49
      |||||||||||||||||||||||||||||||||||| |  | ||||||||
seq2  ATGTAACAGAATGTGGGGTACCTGAAAACAAACTTCTTCATAAGTATGCC  50

seq1  TTATTTATTA-CTGTGTAGGTTTCATTTATATCATCATGAGGAAAACCCC  98
      ||| |||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TTAATTATTACCTGTGTAGGTTTCATTTATATCATCATGAGG-AAACCCC  99

seq1  TGTTAAGGTGCCAGCCACTGCTCTCTGCACCTTAAAAGGACTCACATGGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGTGCCAGCCACTGCTCTCTGCACCTTAAAAGGACTCACATGGG  149

seq1  TAAGTGAAGCTCCCAGCTTACTGCTGCCCATTTTGGTTTCCTCCCTGTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAGCTCCCAGCTTACTGCTGCCCATTTTGGTTTCCTCCCTGTTA  199

seq1  GATTCC-AAGGCTAAACACTGGCATTAAACCTTGTTTACTAGGTCATCCT  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAAAGGCTAAACACTGGCATTAAACCTTGTTTACTAGGTCATCCT  249

seq1  TTCAAAAAGATGAGATTTCGTTCATTATGATCTTTCCTCTATTTTCATTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAGATGAGATTTCGTTCATTATGATCTTTCCTCTATTTTCATTA  299

seq1  TTTAAAGATATTAGATGACGTTCTTGACTTCTGAGATTCCAGATATGCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATATTAGATGACGTTCTTGACTTCTGAGATTCCAGATATGCTC  349

seq1  TTAAAACTGACTGCACCCTCTCCCTACCCTGGCCCTGCGCATTTCTCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTGACTGCACCCTCTCCCTACCCTGGCCCTGCGCATTTCTCAAG  399

seq1  GGCATTCATTCGAGTGGCTGTTCCCACCACCCCACAGAATGCTATGAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCATTCGAGTGGCTGTTCCCACCACCCCACAGAATGCTATGAGGT  449

seq1  AAACAACCAGTGGCTTATTTCTTTGGATCACTTCACACTGTGTGCATGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCAGTGGCTTATTTCTTTGGATCACTTCACACTGTGTGCATGAG  499

seq1  ATTGCTAAGGACAGCCTGTGCAACACAGGCTTCCTCCTGGGTTTACAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAGGACAGCCTGTGCAACACAGGCTTCCTCCTGGGTTTACAAAT  549

seq1  TGTCAGATAGCCAGAGGAGTGGAGAAAGGATCATGCTGCCTTGGAACCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATAGCCAGAGGAGTGGAGAAAGGATCATGCTGCCTTGGAACCTG  599

seq1  AGTCTTGCCACCTGCCCAGGGTGAGAAACAAAAAAGTGAGAGGGTGTCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCCACCTGCCCAGGGTGAGAAACAAAAAAGTGAGAGGGTGTCAG  649

seq1  AACTCTTGCAGACATCAGTGCAACCCCACATCCACCGCTCCCAGTTACTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGCAGACATCAGTGCAACCCCACATCCACCGCTCCCAGTTACTG  699

seq1  CTATGCTGGTTTACATTTTCAGTTTGGGTTGCGAGTTCCTATTAGCTCGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTGGTTTACATTTTCAGTTTGGGTTGCGAGTTCCTATTAGCTCGT  749

seq1  ATGCTTTAACTGATATCTCACCCTCTTCCTGTTTTCCCCCTCCCCGCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAACTGATATCTCACCCTCTTCCTGTTTTCCCCCTCCCCGCTAA  799

seq1  ACAGCTTCACATGAATATGAGTAGCAGATGTCAATCATACTTTTATTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCACATGAATATGAGTAGCAGATGTCAATCATACTTTTATTTCC  849

seq1  GTTTTCACTCTGCTATTTCTGTTGTTAAAATTAGTGCTTGGTGGGCTGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTCTGCTATTTCTGTTGTTAAAATTAGTGCTTGGTGGGCTGAT  899

seq1  TCTGCCTTCTAAAGACCAGCCCCGAATCCAACTGTGTCTACATAGAGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCTAAAGACCAGCCCCGAATCCAACTGTGTCTACATAGAGCTG  949

seq1  TTTTCTAAACCATGTATTATATAAATAAAGATCATTAATATTACCATTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAACCATGTATTATATAAATAAAGATCATTAATATTACCATTAT  999

seq1  CAGGTCATCCATAAACACCATATCTGCTGTGGAGTCCATTGTGTCAAGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATCCATAAACACCATATCTGCTGTGGAGTCCATTGTGTCAAGGG  1049

seq1  CCCTAGAATTC  1058
      |||||||||||
seq2  CCCTAGAATTC  1060


seq1: chr14_24096209_24096694
seq2: B6Ng01-235M14.g_67_552

seq1  GAATTCAAATGAAGTATCAGAATATGCACACAGACCACACTTCCCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAAGTATCAGAATATGCACACAGACCACACTTCCCCCCCC  50

seq1  CCTTGCCTATCCAGAGAAATCATTTGAGTCTTGTGTGCAGCATTAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTATCCAGAGAAATCATTTGAGTCTTGTGTGCAGCATTAGGCCA  100

seq1  CTGTCATTAACAGCACTGGCGTCATTTTCATGTTCACTGTGAGGCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTAACAGCACTGGCGTCATTTTCATGTTCACTGTGAGGCAGTAG  150

seq1  GCACTTTGAAGTTGAAAGCTAGAACAGACATGGATAAATACTACTCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGAAGTTGAAAGCTAGAACAGACATGGATAAATACTACTCCAAG  200

seq1  GGGCTGCCACTGCACCGTTATTGCAAGCAATTATTTCTCAGAGTGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCACTGCACCGTTATTGCAAGCAATTATTTCTCAGAGTGACACA  250

seq1  TCTGATAAAAAGTCAGCCACCTTCTTCTAGAAAGTGTCTCAGTAGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAAAAGTCAGCCACCTTCTTCTAGAAAGTGTCTCAGTAGATACA  300

seq1  ATGAAGAACTCCTGTTTGATTTCTTCTTTTAAATGGACAGAAGATTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAACTCCTGTTTGATTTCTTCTTTTAAATGGACAGAAGATTGCTT  350

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTGTCCCTCTCTCTCTCTCTCTTCCTTCCTCCCTCCCTCCCTCCCC  450
      ||||||||| |||| | | | | | ||||  |  ||| || ||||| | |
seq2  CTCTCTGTCTCTCTTTATTTTTTTTTTCCCGCTCCCCCCCGTCCCTTCTC  450

seq1  CTCTCAGTTTCCCTTCCCGCTCTGATTCTGTCCCTC  486
      ||||| || || |||| || ||||||||||||||||
seq2  CTCTCTGTATCACTTCTCGTTCTGATTCTGTCCCTC  486


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