BAC Information

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BAC

Clone NameB6Ng01-235O19
Chromosome14 (Build37)
Map Location 30,791,508 - 30,965,030
singlet/doubletdoublet
Overlap geneActr8, Il17rb, Chdh, Cacna1d
Upstream geneCacna2d3, Lrtm1, Ppia-ps15, EG665431, Selk
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235O19.bB6Ng01-235O19.g
ACCGA047278GA047279
length1,0281,132
definitionB6Ng01-235O19.b B6Ng01-235O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,791,508 - 30,792,513)(30,963,947 - 30,965,030)
sequence
gaattctctaggggcgacgccggtggcggccattttgactgtgggcagcc
aggggacgccgcgcctgcgcaatggttctcctctgactgctgtggcgtcg
gtgtcccagagccccggggctggtggtggtccacggtggcagagatgacc
caagccgagaagggggacgcggagaacgggaaggagaagggcggggagaa
ggagaaggagcagcgcggcgtgaagcggcccatcgtacccgcgttggtcc
ccgagtcgctgcaggaggtgaggtgcagggggctggccttggttagacca
ctgctagcctgggcctctgctgctggccggagcccagggtccgggcggag
ccggaagcatccgggtcccctcccataggttccttgtgcaaagtagcgcg
gtgcagggcaaagccaaggccgcggtgcacagcctccaggtctcagctat
aagacgtcacgatttagcaacggcctggctctcagggacgccagcagata
ttcagggatggttagggctctaaccagtttctttgtttgcaaatctcaca
gtgcaagtcatttcacgtttaaaagcaggaaaaaggtagcctttccttaa
atagacatgaataatatggcaataacagcacaagtttaagtaaacaactt
ggagcagcatggctcacactctcactcaccagggcttactgataagtaaa
ggaaataaattcctatagggaaatgggccacggcagtgcacagctcccag
aagaaataggggaaggatcggccgttgaggatttcctgtggaccattttc
agaaccttcttcctctcccattaggtgggttgaaatattctaactgggta
gggctgcagtaaaatgcatagtgtggttgtgtgggataggctagtttcag
aggacccactattgtctctcttccagcccttcgacaggaagggccagagg
gtccagggatgcctagaggatttagggtggaggttaagaatggttctata
gaacctatgcccaggtttatctggcatt
gaattcctgacccacttgctgatattccatgcctcacagtggccaatgaa
atgccctgttacagtagcccctccacccgataccgtctacactggagcag
ctccccagggagagggaggggtcctgagctcctaccctgccctgaactgt
tcaccagatgcagagagaccatgctgttgaggttataggcttctcatggt
gacaggcttctcgaggtggaggggctcatggaggaagcatactgcttctg
atgaactttgacctgaacaactgtgattgataagattcctttgccttctg
ggaaacatcacatttccccgttaactctttacataagtgttttcttgaac
aaagcctgaacttttatgctctccaaaatgttagttgcaagtgcaagaat
attctttgaatgccttaactcacccctccttctgtccttcctttccttcc
tccccccctcccgcaccccctctctccattacttccttgcttcctctcat
tctgtttgaggcaggttctctcgtggcccaggctgaccttggatttggta
tgttgccaaggctgatcttgaagccctaatcctcctgcctctacctccta
catgttagtgttgggctgtaggtgtacacggccttttcattctctgactt
tccctttttgtctgtatatgggtgtgatttaggtctaaggaaggttgttc
tctaccggcagaaaaaacaactttctacttcccccttgccttttgctttc
ataaatgttgctttttggttttgggacgagttttctgagtcctttattct
actagaaatcaggcatctttagagggtctgttggctttttcttctcttta
ggactagtgaatgaatgcatggtgtggatttagggtggttccattttgct
tgtctttaattttatgcaaagtcctggttaaaaaacaagcaagaacaagc
cctggtctctataattaaaggacaatttcccaggtggccctattttattt
ttagaaggggcattttgaagaaaagggaaaactttctccagagcagactt
gccatgtcagccctttcttacacttttgggccagtccacacatttgctct
tgccttcctgttgttaggagtgcaagtggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30791508_30792513
seq2: B6Ng01-235O19.b_45_1072

seq1  GAATTCTCTAGGGGCGACGCCGGTGGCGGCCATTTTGACTGTGGGCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGGGCGACGCCGGTGGCGGCCATTTTGACTGTGGGCAGCC  50

seq1  AGGGGACGCCGCGCCTGCGCAATGGTTCTCCTCTGACTGCTGTGGCGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACGCCGCGCCTGCGCAATGGTTCTCCTCTGACTGCTGTGGCGTCG  100

seq1  GTGTCCCAGAGCCCCGGGGCTGGTGGTGGTCCACGGTGGCAGAGATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAGAGCCCCGGGGCTGGTGGTGGTCCACGGTGGCAGAGATGACC  150

seq1  CAAGCCGAGAAGGGGGACGCGGAGAACGGGAAGGAGAAGGGCGGGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCGAGAAGGGGGACGCGGAGAACGGGAAGGAGAAGGGCGGGGAGAA  200

seq1  GGAGAAGGAGCAGCGCGGCGTGAAGCGGCCCATCGTACCCGCGTTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGAGCAGCGCGGCGTGAAGCGGCCCATCGTACCCGCGTTGGTCC  250

seq1  CCGAGTCGCTGCAGGAGGTGAGGTGCAGGGGGCTGGCCTTGGTTAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCGCTGCAGGAGGTGAGGTGCAGGGGGCTGGCCTTGGTTAGACCA  300

seq1  CTGCTAGCCTGGGCCTCTGCTGCTGGCCGGAGCCCAGGGTCCGGGCGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCCTGGGCCTCTGCTGCTGGCCGGAGCCCAGGGTCCGGGCGGAG  350

seq1  CCGGAAGCATCCGGGTCCCCTCCCATAGGTTCCTTGTGCAAAGTAGCGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGCATCCGGGTCCCCTCCCATAGGTTCCTTGTGCAAAGTAGCGCG  400

seq1  GTGCAGGGCAAAGCCAAGGCCGCGGTGCACAGCCTCCAGGTCTCAGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGCAAAGCCAAGGCCGCGGTGCACAGCCTCCAGGTCTCAGCTAT  450

seq1  AAGACGTCACGATTTAGCAACGGCCTGGCTCTCAGGGACGCCAGCAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTCACGATTTAGCAACGGCCTGGCTCTCAGGGACGCCAGCAGATA  500

seq1  TTCAGGGATGGTTAGGGCTCTAACCAGTTTCTTTGTTTGCAAATCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGGTTAGGGCTCTAACCAGTTTCTTTGTTTGCAAATCTCACA  550

seq1  GTGCAAGTCATTTCACGTTTAAAAGCAGGAAAAAGGTAGCCTTTCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGTCATTTCACGTTTAAAAGCAGGAAAAAGGTAGCCTTTCCTTAA  600

seq1  ATAGACATGAATAATATGGCAATAACAGCACAAGTTTAAGTAAACAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATGAATAATATGGCAATAACAGCACAAGTTTAAGTAAACAACTT  650

seq1  GGAGCAGCATGGCTCACACTCTCACTCACCAGGGCTTACTGATAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCATGGCTCACACTCTCACTCACCAGGGCTTACTGATAAGTAAA  700

seq1  GGAAATAAATTCCTATAGGGAAATGGGCCACGGCAGTGCACAGCTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATTCCTATAGGGAAATGGGCCACGGCAGTGCACAGCTCCCAG  750

seq1  AAGAAATA-GGGAAGGATCGGCCGTTGAGGATTTCCTGTGGACCA-TTTC  798
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AAGAAATAGGGGAAGGATCGGCCGTTGAGGATTTCCTGTGGACCATTTTC  800

seq1  AGAACCTTCTTCCTCTCCCA-TAGGTGGGTTGAAATA-TCTAACT-GGTA  845
      |||||||||||||||||||| |||||||||||||||| ||||||| ||||
seq2  AGAACCTTCTTCCTCTCCCATTAGGTGGGTTGAAATATTCTAACTGGGTA  850

seq1  GGGCTGCAGTAAAATGCATAGTGTGG-TGTGTGGGATAGGCTAG-TTCAG  893
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GGGCTGCAGTAAAATGCATAGTGTGGTTGTGTGGGATAGGCTAGTTTCAG  900

seq1  AGGACCCAC-AATGTCTCTCTTCCAGCC--TCGACAGGA--GGGCAGAGG  938
      ||||||||| | ||||||||||||||||  |||||||||  || ||||||
seq2  AGGACCCACTATTGTCTCTCTTCCAGCCCTTCGACAGGAAGGGCCAGAGG  950

seq1  TCCCAGG--AGGCTAGA-GATTTAGGGT-GAGGTT-AGAATGGTTTTAGA  983
        |||||   | ||||| |||||||||| |||||| ||||||||| || |
seq2  GTCCAGGGATGCCTAGAGGATTTAGGGTGGAGGTTAAGAATGGTTCTATA  1000

seq1  G---CTATG-CCAGGTTTATCT-GCATT  1006
      |   ||||| |||||||||||| |||||
seq2  GAACCTATGCCCAGGTTTATCTGGCATT  1028

seq1: chr14_30963947_30965030
seq2: B6Ng01-235O19.g_68_1199 (reverse)

seq1  GGACCAC-TGCACTC--AAACACAGGA--GC-AGAGCAAATGT---GACT  41
      ||||||| |||||||  ||  ||||||  || |||||||||||   ||||
seq2  GGACCACTTGCACTCCTAACAACAGGAAGGCAAGAGCAAATGTGTGGACT  50

seq1  GCCCCAAATGT---AGAA--GGCTGACATG--CAGTCTGCTCTG--GGAA  82
      | |||||| ||   ||||  ||||||||||   |||||||||||  | ||
seq2  GGCCCAAAAGTGTAAGAAAGGGCTGACATGGCAAGTCTGCTCTGGAGAAA  100

seq1  GTTT---CCTTTCT--CAAATGCCC--TCT-AAAATAAA--TGGGCCA-C  121
      ||||   | |||||   ||||||||  ||| ||||||||   |||||| |
seq2  GTTTTCCCTTTTCTTCAAAATGCCCCTTCTAAAAATAAAATAGGGCCACC  150

seq1  TGGG-AATTGTC--TTAATT-TAGAGA-CAGGGCTTGTTCTTGCTTG-TT  165
      |||| |||||||  |||||| |||||| ||||||||||||||||||| ||
seq2  TGGGAAATTGTCCTTTAATTATAGAGACCAGGGCTTGTTCTTGCTTGTTT  200

seq1  TTTAACCA-GAC-TTGCAT-AAATTAAAGACAAGC-AAATGGAACCACCT  211
      |||||||| ||| |||||| ||||||||||||||| ||||||||||||| 
seq2  TTTAACCAGGACTTTGCATAAAATTAAAGACAAGCAAAATGGAACCACCC  250

seq1  TATATCCACA-CATGCATTCATTCACTAGTCCT-AAGAGAAG-AAAAGCC  258
      || ||||||| |||||||||||||||||||||| |||||||| |||||||
seq2  TAAATCCACACCATGCATTCATTCACTAGTCCTAAAGAGAAGAAAAAGCC  300

seq1  AACAGACCCTCT-AAGATG-CTGATTTCTAGTAGAATAAAGGACTCAG-A  305
      |||||||||||| |||||| |||||||||||||||||||||||||||| |
seq2  AACAGACCCTCTAAAGATGCCTGATTTCTAGTAGAATAAAGGACTCAGAA  350

seq1  AACTCGT-CCAAAACC-AAAAGCAACATTTATGAAAGC-AAAGGCAAGGG  352
      ||||||| |||||||| ||||||||||||||||||||| |||||||||||
seq2  AACTCGTCCCAAAACCAAAAAGCAACATTTATGAAAGCAAAAGGCAAGGG  400

seq1  GGAAGTAGAAAGTTGTTTTTTCTGCCGGTAGAGAACAACCTTCCTTAGAC  402
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGAAAGTTGTTTTTTCTGCCGGTAGAGAACAACCTTCCTTAGAC  450

seq1  CTAAATCACACCCATATACAGACAAAAAGGGAAAGTCAGAGAATGAAAAG  452
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCACACCCATATACAGACAAAAAGGGAAAGTCAGAGAATGAAAAG  500

seq1  GCCGTGTACACCTACAGCCCAACACTAACATGTAGGAGGTAGAGGCAGGA  502
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTACACCTACAGCCCAACACTAACATGTAGGAGGTAGAGGCAGGA  550

seq1  GGATTAGGGCTTCAAGATCAGCCTTGGCAACATACCAAATCCAAGGTCAG  552
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGGGCTTCAAGATCAGCCTTGGCAACATACCAAATCCAAGGTCAG  600

seq1  CCTGGGCCACGAGAGAACCTGCCTCAAACAGAATGAGAGGAAGCAAGGAA  602
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCACGAGAGAACCTGCCTCAAACAGAATGAGAGGAAGCAAGGAA  650

seq1  GTAATGGAGAGAGGGGGTGCGGGAGGGGGGGAGGAAGGAAAGGAAGGACA  652
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGAGAGGGGGTGCGGGAGGGGGGGAGGAAGGAAAGGAAGGACA  700

seq1  GAAGGAGGGGTGAGTTAAGGCATTCAAAGAATATTCTTGCACTTGCAACT  702
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGGTGAGTTAAGGCATTCAAAGAATATTCTTGCACTTGCAACT  750

seq1  AACATTTTGGAGAGCATAAAAGTTCAGGCTTTGTTCAAGAAAACACTTAT  752
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGGAGAGCATAAAAGTTCAGGCTTTGTTCAAGAAAACACTTAT  800

seq1  GTAAAGAGTTAACGGGGAAATGTGATGTTTCCCAGAAGGCAAAGGAATCT  802
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGTTAACGGGGAAATGTGATGTTTCCCAGAAGGCAAAGGAATCT  850

seq1  TATCAATCACAGTTGTTCAGGTCAAAGTTCATCAGAAGCAGTATGCTTCC  852
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATCACAGTTGTTCAGGTCAAAGTTCATCAGAAGCAGTATGCTTCC  900

seq1  TCCATGAGCCCCTCCACCTCGAGAAGCCTGTCACCATGAGAAGCCTATAA  902
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCCCCTCCACCTCGAGAAGCCTGTCACCATGAGAAGCCTATAA  950

seq1  CCTCAACAGCATGGTCTCTCTGCATCTGGTGAACAGTTCAGGGCAGGGTA  952
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACAGCATGGTCTCTCTGCATCTGGTGAACAGTTCAGGGCAGGGTA  1000

seq1  GGAGCTCAGGACCCCTCCCTCTCCCTGGGGAGCTGCTCCAGTGTAGACGG  1002
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAGGACCCCTCCCTCTCCCTGGGGAGCTGCTCCAGTGTAGACGG  1050

seq1  TATCGGGTGGAGGGGCTACTGTAACAGGGCATTTCATTGGCCACTGTGAG  1052
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGGTGGAGGGGCTACTGTAACAGGGCATTTCATTGGCCACTGTGAG  1100

seq1  GCATGGAATATCAGCAAGTGGGTCAGGAATTC  1084
      ||||||||||||||||||||||||||||||||
seq2  GCATGGAATATCAGCAAGTGGGTCAGGAATTC  1132