BAC Information

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BAC

Clone NameB6Ng01-236H01
Chromosome14 (Build37)
Map Location 43,421,982 - 43,423,104
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209
Downstream gene1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236H01.bB6Ng01-236H01.g
ACCGA047657GA047658
length1,1281,174
definitionB6Ng01-236H01.b B6Ng01-236H01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgctaagaccacattcctgaagaagatggtatctggcacagc
catcaattcaggcatctatctcattatattctgtgtgttgagaacatatt
tattactctttagtagttacttggagatatttggcccattgcaacccaca
aaatttatatagaagaggtaatcccttggtagccgagattgcaactccca
atccgccatcaccctcccaacatctgtcttaagatctggcaactgatatt
ctaatttcagcttctctaagtgggctaaactggagagggagcccagggca
tcatgcataccaagcagcaaacactacaggagagtacactacacttcacc
acaacacaccccaccacaccacaatacagtatactacactagagaacccc
agtcctcttgtttctctgagatcaactttctttcttagccctttcacagc
cttcctgtatggattatctgcccaaacaaggtgaatgtaataaaagaaag
tgaacattttctactttcataatccacattgaaatttgctgtgaactctg
tgcagagttcatgaccaccaggaacacctggcctcccttctccccattgt
cacttactgggttccctctccattttttctgttgtctttctaatctgagg
atacagccttggatactcagattttgggtactttgtcctttccttcagac
ctctgtatttgctgtgtctccccttaggactctgtgcatcaggctgagta
cttagtagagctgtttctaactctgcatcagcagatacccacaagagctt
ctggccctcagacaggtggttcttcaaagctttagagaagagatgtgact
ctgaagaacaccctgactcctgcagacagatggctgctgaacaaactcca
tgactagttgtcccaggagggttttgggactcctccaaatctggctgcac
tgcagcttctcctagaaattcaatgtggatgcctttacaggttaagagat
cagtcaagtaccacaaagttggccacatggacgcatccagaaaggcatgg
tacaggagaagctgaagaagtcctacatgttcatgtgaagcttgcctaat
agaacattaaatgtcaggccagctaggg
gaattctcacctgaggaataccaaatggcagagaagcacctgacaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtcagaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgtggatgtggagaaagaggaacactcctccattgttgg
tgggagtgcaggcttgtacaacaactctggaaatcagtctggcggttcct
cagaaaattggacatagtactaccggaggatccagcaatacctctcctcg
gcatttatccagaagatgccccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaagaacctag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctagcc
aaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
aagaaactcacacaatatgtactcactgataagtggatattagccccaaa
cctaggatacccaagatataagatataatttgctaaacacatgaaactca
agaagaatgaagactgaagtgtggacactatgcccctccttagatttggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgagat
gaaaggatggaccatgtagagactgccatatccagggatccaccccataa
tcagcatccaaacgctgacaccattgcatacactagcaagattttattga
aaggacccagatgtagctgtctcttgtgagactatgctggggcctagcaa
acacataatggatgctcacagtcagctaatggatggatcatagggctccc
aatggaaggagctagagaagtagccaaaggagctaagggatctgcaacct
atagtggaacaacattatgaactaccagtacccggagctcttgactctag
ctgcatatattattcaaagatggcctagtcgccatcactgcagagagcca
atgggacttgcactttattgccaagtcaatccagtcgaatggcctaggat
gtcaaaattgtcaatgtgtggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43421982_43423104
seq2: B6Ng01-236H01.b_45_1172 (reverse)

seq1  CCCTAGCTGCCTGGACA-TTAATGTTCTATTA-GCAGCCTTCACATGAAC  48
      ||||||||| |  |||| |||||||||||||| |||  ||||||||||||
seq2  CCCTAGCTGGCCTGACATTTAATGTTCTATTAGGCAAGCTTCACATGAAC  50

seq1  ATGTAGGACT--CTCAGCTTCTCCTGTACCATGCCTTTCTGGATGCGTCC  96
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGACTTCTTCAGCTTCTCCTGTACCATGCCTTTCTGGATGCGTCC  100

seq1  ATGTGGCCACCTTGTTGGTACTTGACTGATCCTCTTAACCTGT-AAGGCA  145
      ||||||||| |||  ||||||||||||||| |||||||||||| ||||||
seq2  ATGTGGCCAACTTTGTGGTACTTGACTGAT-CTCTTAACCTGTAAAGGCA  149

seq1  TCCACATTGAA-TTCTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAG  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTGAATTTCTAGGAGAAGCTGCAGTGCAGCCAGATTTGGAGGAG  199

seq1  TCCCAAAACCCTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAACCCTCCTGGGACAACTAGTCATGGAGTTTGTTCAGCAGCCAT  249

seq1  CTGTCTGCAGGAGTCAGGGTGTTCTTCAGAGTCACATCTCTTCTCTAAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCAGGAGTCAGGGTGTTCTTCAGAGTCACATCTCTTCTCTAAAG  299

seq1  CTTTGAAGAACCACCTGTCTGAGGGCCAGAAGCTCTTGTGGGTATCTGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGAACCACCTGTCTGAGGGCCAGAAGCTCTTGTGGGTATCTGCT  349

seq1  GATGCAGAGTTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGTTAGAAACAGCTCTACTAAGTACTCAGCCTGATGCACAGAG  399

seq1  TCCTAAGGGGAGACACAGCAAATACAGAGGTCTGAAGGAAAGGACAAAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGGGAGACACAGCAAATACAGAGGTCTGAAGGAAAGGACAAAGT  449

seq1  ACCCAAAATCTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAGACAACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAATCTGAGTATCCAAGGCTGTATCCTCAGATTAGAAAGACAACA  499

seq1  GAAAAAATGGAGAGGGAACCCAGTAAGTGACAATGGGGAGAAGGGAGGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGGAGAGGGAACCCAGTAAGTGACAATGGGGAGAAGGGAGGCC  549

seq1  AGGTGTTCCTGGTGGTCATGAACTCTGCACAGAGTTCACAGCAAATTTCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCCTGGTGGTCATGAACTCTGCACAGAGTTCACAGCAAATTTCA  599

seq1  ATGTGGATTATGAAAGTAGAAAATGTTCACTTTCTTTTATTACATTCACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATTATGAAAGTAGAAAATGTTCACTTTCTTTTATTACATTCACC  649

seq1  TTGTTTGGGCAGATAATCCATACAGGAAGGCTGTGAAAGGGCTAAGAAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGCAGATAATCCATACAGGAAGGCTGTGAAAGGGCTAAGAAAG  699

seq1  AAAGTTGATCTCAGAGAAACAAGAGGACTGGGGTTCTCTAGTGTAGTATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATCTCAGAGAAACAAGAGGACTGGGGTTCTCTAGTGTAGTATA  749

seq1  CTGTATTGTGGTGTGGTGGGGTGTGTTGTGGTGAAGTGTAGTGTACTCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTGGTGTGGTGGGGTGTGTTGTGGTGAAGTGTAGTGTACTCTC  799

seq1  CTGTAGTGTTTGCTGCTTGGTATGCATGATGCCCTGGGCTCCCTCTCCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGTTTGCTGCTTGGTATGCATGATGCCCTGGGCTCCCTCTCCAG  849

seq1  TTTAGCCCACTTAGAGAAGCTGAAATTAGAATATCAGTTGCCAGATCTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCACTTAGAGAAGCTGAAATTAGAATATCAGTTGCCAGATCTTA  899

seq1  AGACAGATGTTGGGAGGGTGATGGCGGATTGGGAGTTGCAATCTCGGCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGTTGGGAGGGTGATGGCGGATTGGGAGTTGCAATCTCGGCTA  949

seq1  CCAAGGGATTACCTCTTCTATATAAATTTTGTGGGTTGCAATGGGCCAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGATTACCTCTTCTATATAAATTTTGTGGGTTGCAATGGGCCAAA  999

seq1  TATCTCCAAGTAACTACTAAAGAGTAATAAATATGTTCTCAACACACAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAAGTAACTACTAAAGAGTAATAAATATGTTCTCAACACACAGA  1049

seq1  ATATAATGAGATAGATGCCTGAATTGATGGCTGTGCCAGATACCATCTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAGATAGATGCCTGAATTGATGGCTGTGCCAGATACCATCTTC  1099

seq1  TTCAGGAATGTGGTCTTAGCATTGAATTC  1123
      |||||||||||||||||||||||||||||
seq2  TTCAGGAATGTGGTCTTAGCATTGAATTC  1128