BAC Information

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BAC

Clone NameB6Ng01-236J17
Chromosome14 (Build37)
Map Location 80,016,736 - 80,158,079
singlet/doubletdoublet
Overlap geneSugt1, Lect1
Upstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560
Downstream genePcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236J17.bB6Ng01-236J17.g
ACCGA047784GA047785
length1,120814
definitionB6Ng01-236J17.b B6Ng01-236J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,016,736 - 80,017,839)(80,157,269 - 80,158,079)
sequence
gaattcattgaatgatttattcatgtttatgaaattcatgttagcaattt
cacaataaaatcccaggatagaatagtttgatactcctatgccaaggttt
ggcaggaggaatatagtaaagtcttagttttctgtaattaagccacgctt
ttggttttgacttttttttttaaagatcacaaaaggtgtgtccagcaaaa
tgactgcagtttattaacatacaccagtttttgaatcccagccaaggggt
ttcaggcagcattcagttaatgttgcagcatggtagcgtgttgagagagc
acgcacagggcagagagtgcatgctgtgtgttcaggctaaggctgccgtg
atgctgttcagtgcggtattggctagggctgcccaaatgccagggctcct
tacacatttggcttagaattagcttgtggtggtgttactgttgccaaagc
tttggtggttcctggattcagctgcacagctggatacagggtcgagagac
ctacagataggagaccagtgttctgaccctcgggtcaacatatcttccat
atgtaatcataaactgctgtgtttttcaaaaacaaattgaaatttttttt
ttttgtaattatgtttctttagggaactaaatggtgaaatctttgatcat
ttcctttttcaaacagcagagggaggcagtgttatatgcagtagtgctag
gaagatgggattcagtgggtaaagagcttgctacactgaggacccagatt
tctagaacctgcatgaaatcaggtgggtgtggtggctgttcgtgcttctc
agcatccaggagataagcacaggagatccttagagcaaggtggcttgtca
gactagctaaaatgttgtactctacgttcagtgagagactcccatctcag
gatagaaaggtgaatgaatgagggtcacatctgatatctttgtacacgaa
ttcacacacatgcaggtacactcattacatgcaaaataaataaaaatgta
gacaataatcttcccatggttcctgtaaagtgcgctggcattatgtaaag
ccactaagcacacagtgctactaccctcatatttcagagttttatatggg
ctctaaaaaagcagaagaag
gaattcttttttttttctcaaagtatctcttagagggttgaagatttata
tctaatgaatgtcacaagaccatcagaggaagggctgggttgcagtgggt
gggagtggagatgggcagggaagtagactctcatttcacttagtcaccgg
ctcccaggcatcgcttacccttctcataattcgttcctcttatcagccaa
aagccgttaattaccaccttcactagaggtctggaaacaatgaagatgct
taggtacctccaggaatactaaggaccctgtcagccctcttctggcacta
aagaaattcaatgtcaccagtccctcactagtattcctcctgatgggcat
ggtagcccatcttgcaaactatgatccatgtgaaagctagtcaaagatca
cgttctgcagagttgtctaaacacttcaagtgttcatataggactctaaa
attacttcagaaatcctttcactcttcactcaatttttgacgactgtcaa
gtgccggagacactcgggcagggtgaagattcgtctgagaatcccttgct
gagaaagtattctaggaaaggtggagaagcaaagaggaaaaggtgggggt
gggggagaacgctccacaaaggtgatggctctggtttgcatctggatcca
acccagagctctagggcacaaactggctctctactgtgtgaggggctagc
ctttttgaactctatgtcagttgtttgcctctgcagtggggggagagggg
tgggttacctattgtcaagaaggcttcctgtttggctgggggctggtctc
cagtaagggggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80016736_80017839
seq2: B6Ng01-236J17.b_52_1163

seq1  TGAATGATTTATTCATGTTTATGAAATTCATGTTAGCAATTTCACAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATTTATTCATGTTTATGAAATTCATGTTAGCAATTTCACAATAA  50

seq1  AATCCCAGGATAGAATAGTTTGATACTCCTATGCCAAGGTTTGGCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGGATAGAATAGTTTGATACTCCTATGCCAAGGTTTGGCAGGAG  100

seq1  GAATATAGTAAAGTCTTAGTTTTCTGTAATTAAGCCACGCTTTTGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGTAAAGTCTTAGTTTTCTGTAATTAAGCCACGCTTTTGGTTTT  150

seq1  GACTTTTTTTTTTAAAGATCACAAAAGGTGTGTCCAGCAAAATGACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTTTTTTAAAGATCACAAAAGGTGTGTCCAGCAAAATGACTGCA  200

seq1  GTTTATTAACATACACCAGTTTTTGAATCCCAGCCAAGGGGTTTCAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTAACATACACCAGTTTTTGAATCCCAGCCAAGGGGTTTCAGGCA  250

seq1  GCATTCAGTTAATGTTGCAGCATGGTAGCGTGTTGAGAGAGCACGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTTAATGTTGCAGCATGGTAGCGTGTTGAGAGAGCACGCACAG  300

seq1  GGCAGAGAGTGCATGCTGTGTGTTCAGGCTAAGGCTGCCGTGATGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGTGCATGCTGTGTGTTCAGGCTAAGGCTGCCGTGATGCTGTT  350

seq1  CAGTGCGGTATTGGCTAGGGCTGCCCAAATGCCAGGGCTCCTTACACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGGTATTGGCTAGGGCTGCCCAAATGCCAGGGCTCCTTACACATT  400

seq1  TGGCTTAGAATTAGCTTGTGGTGGTGTTACTGTTGCCAAAGCTTTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAATTAGCTTGTGGTGGTGTTACTGTTGCCAAAGCTTTGGTGG  450

seq1  TTCCTGGATTCAGCTGCACAGCTGGATACAGGGTCGAGAGACCTACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGATTCAGCTGCACAGCTGGATACAGGGTCGAGAGACCTACAGAT  500

seq1  AGGAGACCAGTGTTCTGACCCTCGGGTCAACATATCTTCCATATGTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCAGTGTTCTGACCCTCGGGTCAACATATCTTCCATATGTAATC  550

seq1  ATAAACTGCTGTGTTTTTCAAAAACAAATTGAAATTTTTTTTTTTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGCTGTGTTTTTCAAAAACAAATTGAAATTTTTTTTTTTTGTAA  600

seq1  TTATGTTTCTTTAGGGAACTAAATGGTGAAATCTTTGATCATTTCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTCTTTAGGGAACTAAATGGTGAAATCTTTGATCATTTCCTTTT  650

seq1  TCAAACAGCAGAGGGAGGCAGTGTTATATGCAGTAGTGCTAGGAAGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGCAGAGGGAGGCAGTGTTATATGCAGTAGTGCTAGGAAGATGG  700

seq1  GATTCAGTGGGTAAAGAGCTTGCTACACTGAGGACCCAGATTTCTAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTGGGTAAAGAGCTTGCTACACTGAGGACCCAGATTTCTAGAAC  750

seq1  CTGCATGAAATCAGGTGGGTGTGGTGGCTGTTCGTGCTTCTCAGCATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAAATCAGGTGGGTGTGGTGGCTGTTCGTGCTTCTCAGCATCCA  800

seq1  GGAGATAAGCACAGGAGATCCTTAGAGCAAGGTGGCTTGTCAGACTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAGCACAGGAGATCCTTAGAGCAAGGTGGCTTGTCAGACTAGCT  850

seq1  AAAATGTTGTACTCTACGTTCAGTGAGAGAC-CCCATCTCAGGATAG-AA  898
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AAAATGTTGTACTCTACGTTCAGTGAGAGACTCCCATCTCAGGATAGAAA  900

seq1  GGTGAATGAATGAGGGTCACATCTGATATCTTTGTACACGAATTCACACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGAATGAGGGTCACATCTGATATCTTTGTACACGAATTCACACA  950

seq1  CATGCAGGTACACTCA-TACATGC-AAATAAAT-AAAATGTAGACAATAA  995
      |||||||||||||||| ||||||| |||||||| ||||||||||||||||
seq2  CATGCAGGTACACTCATTACATGCAAAATAAATAAAAATGTAGACAATAA  1000

seq1  TCTT-CCATGGTT-CTGTAAAGTGCGCTGGCA-TATGTAAAG-CACTAAG  1041
      |||| |||||||| |||||||||||||||||| ||||||||| |||||||
seq2  TCTTCCCATGGTTCCTGTAAAGTGCGCTGGCATTATGTAAAGCCACTAAG  1050

seq1  CACACAGTGCTACTTACCCTCATAATTCAGAGTTTTATATGGGCTCTAAA  1091
      ||||||||||||| |||||||||| |||||||||||||||||||||| ||
seq2  CACACAGTGCTAC-TACCCTCATATTTCAGAGTTTTATATGGGCTCT-AA  1098

seq1  AAAAGCAG-AGAAG  1104
      |||||||| |||||
seq2  AAAAGCAGAAGAAG  1112

seq1: chr14_80157269_80158079
seq2: B6Ng01-236J17.g_65_877 (reverse)

seq1  AGCCCCCTTCCTGGAGACCAGCCCCCAGCCAAACAGGAAGCCTTCTTGAC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTTACTGGAGACCAGCCCCCAGCCAAACAGGAAGCCTTCTTGAC  50

seq1  AATAGGTAACCCACCCCTCT-CCCCCACTGCAGAGGCCAACAACTGACAT  99
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  AATAGGTAACCCACCCCTCTCCCCCCACTGCAGAGGCAAACAACTGACAT  100

seq1  AGAGTTC-AAAAGGCTAGCCCCTCACACAGTAGAGAGCCAGTTTGTGCCC  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAAAAAGGCTAGCCCCTCACACAGTAGAGAGCCAGTTTGTGCCC  150

seq1  TAGAGCTCTGGGTTGGATCCAGATGCAAACCAGAGCCATCACCTTTGTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCTGGGTTGGATCCAGATGCAAACCAGAGCCATCACCTTTGTGG  200

seq1  AGCGTTCTCCCCCACCCCCACCTTTTCCTCTTTGCTTCTCCACCTTTCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTCTCCCCCACCCCCACCTTTTCCTCTTTGCTTCTCCACCTTTCCT  250

seq1  AGAATACTTTCTCAGCAAGGGATTCTCAGACGAATCTTCACCCTGCCCGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTTTCTCAGCAAGGGATTCTCAGACGAATCTTCACCCTGCCCGA  300

seq1  GTGTCTCCGGCACTTGACAGTCGTCAAAAATTGAGTGAAGAGTGAAAGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCGGCACTTGACAGTCGTCAAAAATTGAGTGAAGAGTGAAAGGA  350

seq1  TTTCTGAAGTAATTTTAGAGTCCTATATGAACACTTGAAGTGTTTAGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAGTAATTTTAGAGTCCTATATGAACACTTGAAGTGTTTAGACA  400

seq1  ACTCTGCAGAACGTGATCTTTGACTAGCTTTCACATGGATCATAGTTTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGAACGTGATCTTTGACTAGCTTTCACATGGATCATAGTTTGC  450

seq1  AAGATGGGCTACCATGCCCATCAGGAGGAATACTAGTGAGGGACTGGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGCTACCATGCCCATCAGGAGGAATACTAGTGAGGGACTGGTGA  500

seq1  CATTGAATTTCTTTAGTGCCAGAAGAGGGCTGACAGGGTCCTTAGTATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTTCTTTAGTGCCAGAAGAGGGCTGACAGGGTCCTTAGTATTC  550

seq1  CTGGAGGTACCTAAGCATCTTCATTGTTTCCAGACCTCTAGTGAAGGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTACCTAAGCATCTTCATTGTTTCCAGACCTCTAGTGAAGGTGG  600

seq1  TAATTAACGGCTTTTGGCTGATAAGAGGAACGAATTATGAGAAGGGTAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACGGCTTTTGGCTGATAAGAGGAACGAATTATGAGAAGGGTAAG  650

seq1  CGATGCCTGGGAGCCGGTGACTAAGTGAAATGAGAGTCTACTTCCCTGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCCTGGGAGCCGGTGACTAAGTGAAATGAGAGTCTACTTCCCTGCC  700

seq1  CATCTCCACTCCCACCCACTGCAACCCAGCCCTTCCTCTGATGGTCTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCACTCCCACCCACTGCAACCCAGCCCTTCCTCTGATGGTCTTGT  750

seq1  GACATTCATTAGATATAAATCTTCAACCCTCTAAGAGATACTTTGAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCATTAGATATAAATCTTCAACCCTCTAAGAGATACTTTGAGAAA  800

seq1  AAAAAAAGAATTC  811
      |||||||||||||
seq2  AAAAAAAGAATTC  813