BAC Information

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BAC

Clone NameB6Ng01-238D17
Chromosome14 (Build37)
Map Location 105,271,441 - 105,343,311
singlet/doubletdoublet
Overlap genenone
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238D17.bB6Ng01-238D17.g
ACCGA048980GA048981
length1,133656
definitionB6Ng01-238D17.b B6Ng01-238D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,342,165 - 105,343,311)(105,271,441 - 105,272,096)
sequence
gaattccttcactgtgtctgatgtgtaagggatggccctcaattagttgt
gctatgcttcctcttgcttggtaagcatttttggtcaaacaaggaatggc
agagtcccacaattagatcaaaagatcaatcctaatgtcccattttctcc
tcaccctcctgctgtaataaagtggccacagttctccaggggacaactca
aaatcctaggactgatatttctaaattagctgactctctgaccttgctgg
taattgcgttagtttatcaatgttcaacacaatttattactctccaatat
gtaccaaagtgtttatctctcaacactaacaatattaaaaaaatctaaac
tatctattgcagtacaaagaggcatcctttcattagggaaaatataaatg
aataggaaatgtcacatgacccgcctttgcacagaagaggggtgacttga
gacagaggacagctgccatctgctctgatttagcaacattatgttactga
aatctggaagaagagaaattaggttttgtttttatttgtgtgtctgatgc
aggaataaagtgatattttctgcgataccacagtaatggccgcattccaa
gataaatgaatggcacccttaaaaccttaccaaagcgtcagaaggcgata
tagcatcagaagtcacttggactttaagcatcatgtgttttgggctggga
gaaaagccattaaagtcatgaatcctattttgggatatagaaaaaaaatc
catccccccttgcttcccttatcttggccatttttattatgttatctaag
ctttctgtttaattatggaggtagacaagctatgacagaagtcagtttat
attatgttagccaaaggtgatgatgcaagattgaagtttcatatcatgca
ggtctctttttaacccagtttggacagagtgtagtatgagctgtgctgag
agccactaatgagcaagcccggagatacagatatgctctcacatgggctg
atttctatctagcttcctttcttctagtgccggatgctgtgtttcttcta
cgatgatagagcagctaggatgtgttgtcatcccatcactcaactacccg
ctctccaataagcagcaagcctgtgatctttag

gaattcaaatgggggaaaagagtacattaaaaccaactgacaaatatgtt
ttagttgtttgagaaatcagaatacagggcttagtgttgtcgaatcagag
tgtaaatattccacttgtaagagaggtaatctttaatgatttgttctacg
tgagctattgttgagcaaacagtacaaacactttcaaaatgcttgaaacc
aatactaagatacaaacttcaaaatcatttaaaactctttataagaaaat
aaaattagcatttgcaaaagaaaaactattttcagctttgattaaaaaga
aaggaacagactaacaagcctgtgaacaataacctacagcagccctcgct
tccggattcctctgtgcagggtctgtggacttacgcagcccgttacagtg
caatatttagggcttcaattatcactcttgttttaacttggaaaactaga
atattttgtgatttcaactcctgtagattttgctgcagatagacgtttct
caggtgctaaagcagaaacattggtggatatttaaaacctgaggttctgt
gctctgctcacacatttattctgcctcattctagtcccagattctaaacc
gattgctaaaagctaaagataaatagataggtaggtatgtaggtaggtag
gtaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_105342165_105343311
seq2: B6Ng01-238D17.b_48_1180 (reverse)

seq1  CTAAAGATCACAGGGCCTGCTGCTTAATGGGAGAGCGGGTAGGTGAGTGG  50
      |||||||||||| ||| |||||||| || ||||||||||||| ||||| |
seq2  CTAAAGATCACA-GGCTTGCTGCTT-ATTGGAGAGCGGGTAGTTGAGT-G  47

seq1  ATGGGGATGGACCAAACACATCCTAGCTGCTCTATCATCTGTAG-AGAAA  99
      || ||||| |||  ||||||||||||||||||||||||| |||| |||||
seq2  AT-GGGAT-GAC--AACACATCCTAGCTGCTCTATCATC-GTAGAAGAAA  92

seq1  CACAGCATCCCGGCACTAGAAAGAAAGGGAAGCTAGATAGAAATCAGCCC  149
      |||||||| |||||||||| |||||| |||||||||||||||||||||||
seq2  CACAGCAT-CCGGCACTAG-AAGAAA-GGAAGCTAGATAGAAATCAGCCC  139

seq1  ATGTGAGAGCATTATCTGTATCTTCCGGGCTTGCTCATTAGTGGCTCTCA  199
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  ATGTGAGAGCA-TATCTGTATC-TCCGGGCTTGCTCATTAGTGGCTCTCA  187

seq1  GCACAGCTCATACTACACTCCTTGTCCAAACTGGGTTAAAAAGAGACCTG  249
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GCACAGCTCATACTACACTC--TGTCCAAACTGGGTTAAAAAGAGACCTG  235

seq1  CATGATATGAAACTTCAATCTTGCATCATCACCTTTGGCTAACATAATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATGAAACTTCAATCTTGCATCATCACCTTTGGCTAACATAATAT  285

seq1  AAACTGACTTCTGTCATAGCTTGTCTACCTCCATAATTAAACAGAAAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACTTCTGTCATAGCTTGTCTACCTCCATAATTAAACAGAAAGCT  335

seq1  TAGATAACATAATAAAAATGGCCAAGATAAGGGAAGCAAGGGGGGATGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACATAATAAAAATGGCCAAGATAAGGGAAGCAAGGGGGGATGGA  385

seq1  TTTTTTTTCTATATCCCAAAATAGGATTCATGACTTTAATGGCTTTTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTATATCCCAAAATAGGATTCATGACTTTAATGGCTTTTCTC  435

seq1  CCAGCCCAAAACACATGATGCTTAAAGTCCAAGTGACTTCTGATGCTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAAAACACATGATGCTTAAAGTCCAAGTGACTTCTGATGCTATA  485

seq1  TCGCCTTCTGACGCTTTGGTAAGGTTTTAAGGGTGCCATTCATTTATCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTTCTGACGCTTTGGTAAGGTTTTAAGGGTGCCATTCATTTATCTT  535

seq1  GGAATGCGGCCATTACTGTGGTATCGCAGAAAATATCACTTTATTCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCGGCCATTACTGTGGTATCGCAGAAAATATCACTTTATTCCTGC  585

seq1  ATCAGACACACAAATAAAAACAAAACCTAATTTCTCTTCTTCCAGATTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACACACAAATAAAAACAAAACCTAATTTCTCTTCTTCCAGATTTC  635

seq1  AGTAACATAATGTTGCTAAATCAGAGCAGATGGCAGCTGTCCTCTGTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATAATGTTGCTAAATCAGAGCAGATGGCAGCTGTCCTCTGTCTC  685

seq1  AAGTCACCCCTCTTCTGTGCAAAGGCGGGTCATGTGACATTTCCTATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCCCTCTTCTGTGCAAAGGCGGGTCATGTGACATTTCCTATTCA  735

seq1  TTTATATTTTCCCTAATGAAAGGATGCCTCTTTGTACTGCAATAGATAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCCCTAATGAAAGGATGCCTCTTTGTACTGCAATAGATAGT  785

seq1  TTAGATTTTTTTAATATTGTTAGTGTTGAGAGATAAACACTTTGGTACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTTTAATATTGTTAGTGTTGAGAGATAAACACTTTGGTACAT  835

seq1  ATTGGAGAGTAATAAATTGTGTTGAACATTGATAAACTAACGCAATTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGAGTAATAAATTGTGTTGAACATTGATAAACTAACGCAATTACC  885

seq1  AGCAAGGTCAGAGAGTCAGCTAATTTAGAAATATCAGTCCTAGGATTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTCAGAGAGTCAGCTAATTTAGAAATATCAGTCCTAGGATTTTG  935

seq1  AGTTGTCCCCTGGAGAACTGTGGCCACTTTATTACAGCAGGAGGGTGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCCCTGGAGAACTGTGGCCACTTTATTACAGCAGGAGGGTGAGG  985

seq1  AGAAAATGGGACATTAGGATTGATCTTTTGATCTAATTGTGGGACTCTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGGACATTAGGATTGATCTTTTGATCTAATTGTGGGACTCTGC  1035

seq1  CATTCCTTGTTTGACCAAAAATGCTTACCAAGCAAGAGGAAGCATAGCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTTTGACCAAAAATGCTTACCAAGCAAGAGGAAGCATAGCAC  1085

seq1  AACTAATTGAGGGCCATCCCTTACACATCAGACACAGTGAAGGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTGAGGGCCATCCCTTACACATCAGACACAGTGAAGGAATTC  1133


seq1: chr14_105271441_105272096
seq2: B6Ng01-238D17.g_65_720

seq1  GAATTCAAATGGGGGAAAAGAGTACATTAAAACCAACTGACAAATATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGGGGGAAAAGAGTACATTAAAACCAACTGACAAATATGTT  50

seq1  TTAGTTGTTTGAGAAATCAGAATACAGGGCTTAGTGTTGTCGAATCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTTTGAGAAATCAGAATACAGGGCTTAGTGTTGTCGAATCAGAG  100

seq1  TGTAAATATTCCACTTGTAAGAGAGGTAATCTTTAATGATTTGTTCTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTCCACTTGTAAGAGAGGTAATCTTTAATGATTTGTTCTACG  150

seq1  TGAGCTATTGTTGAGCAAACAGTACAAACACTTTCAAAATGCTTGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATTGTTGAGCAAACAGTACAAACACTTTCAAAATGCTTGAAACC  200

seq1  AATACTAAGATACAAACTTCAAAATCATTTAAAACTCTTTATAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAGATACAAACTTCAAAATCATTTAAAACTCTTTATAAGAAAAT  250

seq1  AAAATTAGCATTTGCAAAAGAAAAACTATTTTCAGCTTTGATTAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGCATTTGCAAAAGAAAAACTATTTTCAGCTTTGATTAAAAAGA  300

seq1  AAGGAACAGACTAACAAGCCTGTGAACAATAACCTACAGCAGCCCTCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAGACTAACAAGCCTGTGAACAATAACCTACAGCAGCCCTCGCT  350

seq1  TCCGGATTCCTCTGTGCAGGGTCTGTGGACTTACGCAGCCCGTTACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGATTCCTCTGTGCAGGGTCTGTGGACTTACGCAGCCCGTTACAGTG  400

seq1  CAATATTTAGGGCTTCAATTATCACTCTTGTTTTAACTTGGAAAACTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTAGGGCTTCAATTATCACTCTTGTTTTAACTTGGAAAACTAGA  450

seq1  ATATTTTGTGATTTCAACTCCTGTAGATTTTGCTGCAGATAGACGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTGATTTCAACTCCTGTAGATTTTGCTGCAGATAGACGTTTCT  500

seq1  CAGGTGCTAAAGCAGAAACATTGGTGGATATTTAAAACCTGAGGTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTAAAGCAGAAACATTGGTGGATATTTAAAACCTGAGGTTCTGT  550

seq1  GCTCTGCTCACACATTTATTCTGCCTCATTCTAGTCCCAGATTCTAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTCACACATTTATTCTGCCTCATTCTAGTCCCAGATTCTAAACC  600

seq1  GATTGCTAAAAGCTAAAGATAAATAGATAGGTAGGTATGTAGGTAGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTAAAAGCTAAAGATAAATAGATAGGTAGGTATGTAGGTAGGTAG  650

seq1  GTAGGT  656
      ||||||
seq2  GTAGGT  656


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