BAC Information

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BAC

Clone NameB6Ng01-238J13
Chromosome14 (Build37)
Map Location 98,749,374 - 98,925,018
singlet/doubletdoublet
Overlap geneLOC635593
Upstream geneEG668659, Dach1
Downstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238J13.bB6Ng01-238J13.g
ACCGA049247GA049248
length1,1411,147
definitionB6Ng01-238J13.b B6Ng01-238J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,749,374 - 98,750,517)(98,923,892 - 98,925,018)
sequence
gaattccactcacctcaggtttaggaagcaataaagaagaggaaagagat
aggttccttctgctggcttcgaatgtttgcccactaggctctgcatccta
aactccctagttcctccaatagcagaactctttggggaccaaacttttaa
gacatagaagattggaggatgcttagcagccaaacgaaagcatagaacca
cacaactttatgcaagaaaaattaaggacacaaagaatagattgctacac
ctggtttcacacacacacacacacacacacacacacacacacaaatgttt
gaatgttaaaattacagaagtctgtaggttttaatagagagcgaactgag
aactcatggtgtagaatttttgacaccattgctcaatcttcaaaatatac
atatatcttataaaagaatcttgttagagtgtagtttctgaatctgtaaa
tctgcaacagagtttaggaatctgaacttctctaaagttcctgggcatgt
tcagtggagcacatactgggtggcaagggtctagacacagatgttactct
gttgaaattctctaataatatttatagtttcctgcagaaaggtcttatgc
aattttgtctctagatatttgaaagtttataaattatatctgttttaaat
tttatattccatttattgttgatttatagcaattcaattggccataatat
tactttatcaggataaatccacttatgaacctaataattttccctatatt
cttttgaatttcttacaaatataatcatcttatatgaatagtgacaattt
tatgtccttccctcaacatcatttacattttatttctgttcttagcttaa
cttccctgataaaaacctcttacattgaagagagatgataacagacacct
ttttgtttcattgcacatatttcaacagaaatgtctccattcttgatcac
tgagtgcaatagcttagggtgctcttgtttaagccaacacttcacttttt
gtctttgttcattggaatgacttttctggagggcacagattgcctgaacc
caaggcctcaaacatgctatagaagtgccctgccctcaagctatgctcct
cagcccacactggtagacctagtgcttgctggtttgctgcc

gaattctcctgaatattcataggctcatggaacatttgatcaaacaagga
agttactgatgccttcgcccagtgcctactatcaagatgaagtcatggag
gctcagagactggaagtggcttgctggacattgtccagcaaggtaacact
aagacccaagagccaagtgttggggaaggacatagagcaaaggatgtgat
gtaagggaatgataccaactagggcataagaactgtgctacagatggtat
acagtagcaatgtaagaatgtaaagatcaagttaaggaatgaagaatcag
acacacagcatattaaatgaccgttggcttcatcaggctgatgttttgag
aaagactttttcctgtttccattggttaataggactttgtcatttttgtt
cacccacatcccattccagtatacaagactggtctctctaatatgaatag
gttttaaaataggttttcatttatttttgacattataatataattatatt
acttatttccccttcctccctccaaaaaatctcatataccccaccccttg
ctgtctttcaaattctatagccccgtttttctctttgttgttgcctgcac
acatctttcttttcatcagtttcttcttgctctaggaagatcacactctt
ttcaggacatttgcaccataggtataaaacatgggcacatttgtttttta
atgtctgttcttatgtattggttggtcatccttgaaagttaagaatagct
cttagattctagttgacccttaggccctttctacaactcagaacattcgt
taaatcatattttgaaatccatatctctctgtatctttctaacaaaaggg
gaaaatgccttaatctattaaaagaatttgtcatatctaacttatctttg
tctattcttgcaagggaaatggatggtcttttatctttggcaagtactca
tattacaatgtttatcaaacatattagagttctttctcgtggcacctctc
tctggtggctaacagagtatgtttctttcactttgaaagggacatcaaag
aagcaatttttctttattaaactcactgagttttttttttcttaacttat
gccttttggtctatgtgagaccatatggcctaaaagaattttagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_98749374_98750517
seq2: B6Ng01-238J13.b_43_1183

seq1  GAATTCCACTCACCTCAGGTTTAGGAAGCAATAAAGAAGAGGAAAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCACCTCAGGTTTAGGAAGCAATAAAGAAGAGGAAAGAGAT  50

seq1  AGGTTCCTTCTGCTGGCTTCGAATGTTTGCCCACTAGGCTCTGCATCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTTCTGCTGGCTTCGAATGTTTGCCCACTAGGCTCTGCATCCTA  100

seq1  AACTCCCTAGTTCCTCCAATAGCAGAACTCTTTGGGGACCAAACTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCTAGTTCCTCCAATAGCAGAACTCTTTGGGGACCAAACTTTTAA  150

seq1  GACATAGAAGATTGGAGGATGCTTAGCAGCCAAACGAAAGCATAGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAAGATTGGAGGATGCTTAGCAGCCAAACGAAAGCATAGAACCA  200

seq1  CACAACTTTATGCAAGAAAAATTAAGGACACAAAGAATAGATTGCTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTATGCAAGAAAAATTAAGGACACAAAGAATAGATTGCTACAC  250

seq1  CTGGTTTCACACACACACACACACACACACACACACACACACAAATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCACACACACACACACACACACACACACACACACACAAATGTTT  300

seq1  GAATGTTAAAATTACAGAAGTCTGTAGGTTTTAATAGAGAGCGAACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTAAAATTACAGAAGTCTGTAGGTTTTAATAGAGAGCGAACTGAG  350

seq1  AACTCATGGTGTAGAATTTTTGACACCATTGCTCAATCTTCAAAATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGGTGTAGAATTTTTGACACCATTGCTCAATCTTCAAAATATAC  400

seq1  ATATATCTTATAAAAGAATCTTGTTAGAGTGTAGTTTCTGAATCTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTATAAAAGAATCTTGTTAGAGTGTAGTTTCTGAATCTGTAAA  450

seq1  TCTGCAACAGAGTTTAGGAATCTGAACTTCTCTAAAGTTCCTGGGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACAGAGTTTAGGAATCTGAACTTCTCTAAAGTTCCTGGGCATGT  500

seq1  TCAGTGGAGCACATACTGGGTGGCAAGGGTCTAGACACAGATGTTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGAGCACATACTGGGTGGCAAGGGTCTAGACACAGATGTTACTCT  550

seq1  GTTGAAATTCTCTAATAATATTTATAGTTTCCTGCAGAAAGGTCTTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATTCTCTAATAATATTTATAGTTTCCTGCAGAAAGGTCTTATGC  600

seq1  AATTTTGTCTCTAGATATTTGAAAGTTTATAAATTATATCTGTTTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTCTCTAGATATTTGAAAGTTTATAAATTATATCTGTTTTAAAT  650

seq1  TTTATATTCCATTTATTGTTGATTTATAGCAATTCAATTGGCCATAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTCCATTTATTGTTGATTTATAGCAATTCAATTGGCCATAATAT  700

seq1  TACTTTATCAGGATAAATCCACTTATGAACCTAATAATTTTCCCTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATCAGGATAAATCCACTTATGAACCTAATAATTTTCCCTATATT  750

seq1  CTTTTGAATTTCTTACAAATATAATCATCTTATATGAATAGTGACAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAATTTCTTACAAATATAATCATCTTATATGAATAGTGACAATTT  800

seq1  TATGTCCTTCCCTCAACATCATTTACATTTTATTTCTGTTCTTAGCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTTCCCTCAACATCATTTACATTTTATTTCTGTTCTTAGCTTAA  850

seq1  CTTCCCTGATAAAAACCTCTTACATTGAAGAGAGATGATAACAGACACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGATAAAAACCTCTTACATTGAAGAGAGATGATAACAGACACCT  900

seq1  TTTTGTTTCATTGCACATATTTCAAACAGAAATGTCTCCATTCTTGATCA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTGTTTCATTGCACATATTTC-AACAGAAATGTCTCCATTCTTGATCA  949

seq1  CTGAGTGCAATAGCTTAGGGTTGCTCTTGTTTTAAGCCAACACTTTCACT  1000
      |||||||||||||||||||| |||||||| ||||||||||||| ||||||
seq2  CTGAGTGCAATAGCTTAGGG-TGCTCTTG-TTTAAGCCAACAC-TTCACT  996

seq1  TTTTGTCTTTGTTCATTGGAATGACTTTTCTGGAGGGGCACAGATTG-CT  1049
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TTTTGTCTTTGTTCATTGGAATGACTTTTCTGGA-GGGCACAGATTGCCT  1045

seq1  GAACCAAGGGCCTCAAACATGCTATAGAGGTGCCCTGCCCTCAAGCTATG  1099
      ||||| | |||||||||||||||||||| |||||||||||||||||||||
seq2  GAACCCAAGGCCTCAAACATGCTATAGAAGTGCCCTGCCCTCAAGCTATG  1095

seq1  CT-CTCAG-CCACACTGTAAGA-CTAGTTTGCTTGCTTGTTTGCTGCC  1144
      || ||||| ||||||||  ||| ||||  |||||||| ||||||||||
seq2  CTCCTCAGCCCACACTGGTAGACCTAG--TGCTTGCTGGTTTGCTGCC  1141


seq1: chr14_98923892_98925018
seq2: B6Ng01-238J13.g_69_1215 (reverse)

seq1  AAACTAAA--TCATTTATGGCCATATGGTCTCA---TGAC---AAAGCAT  42
      ||||||||  || |||| |||||||||||||||    |||   || ||||
seq2  AAACTAAAATTCTTTTA-GGCCATATGGTCTCACATAGACCAAAAGGCAT  49

seq1  -AGTTAAG--AAAAAAAACTCAGTGAGTTTTATACAGAAA---TGCTTCT  86
       |||||||  |||||||||||||||||||| ||| |||||   |||||||
seq2  AAGTTAAGAAAAAAAAAACTCAGTGAGTTTAATAAAGAAAAATTGCTTCT  99

seq1  TTGATGTCCCTT--CAAGTGAAAGAAACATACTCTG-TAGCCA-CAGAGA  132
      ||||||||||||   ||||||||||||||||||||| |||||| ||||||
seq2  TTGATGTCCCTTTCAAAGTGAAAGAAACATACTCTGTTAGCCACCAGAGA  149

seq1  GAGGTGCCACGAGAAAGAACTCTAATATG-TTGATAAACA-TGTAATATG  180
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GAGGTGCCACGAGAAAGAACTCTAATATGTTTGATAAACATTGTAATATG  199

seq1  AGTACTTGCCAAAGATAAAAGACCATCCATTTCCCTTTGCAAGAATAGAC  230
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTACTTGCCAAAGATAAAAGACCATCCATTTCCC-TTGCAAGAATAGAC  248

seq1  AAAGATAAGTTAGATATGAC-AATTCTTTTAATAGATTAAGGCATTTT-C  278
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  AAAGATAAGTTAGATATGACAAATTCTTTTAATAGATTAAGGCATTTTCC  298

seq1  CCTTTTGTTAAGAAAGATACAGAGAGATATGGATTTCAAAATATGATTTA  328
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTT-AGAAAGATACAGAGAGATATGGATTTCAAAATATGATTTA  347

seq1  ACGAATGTTCTGAGTTGTAG-AAGGGCCTAAGGGTCAACTAGAATCTAAG  377
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACGAATGTTCTGAGTTGTAGAAAGGGCCTAAGGGTCAACTAGAATCTAAG  397

seq1  AGCTATTCTTAACTTTCAAGGATGACCAACCAATACATAAGAACAGACAT  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCTTAACTTTCAAGGATGACCAACCAATACATAAGAACAGACAT  447

seq1  TAAAAAACAAATGTGCCCATGTTTTATACCTATGGTGCAAATGTCCTGAA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAATGTGCCCATGTTTTATACCTATGGTGCAAATGTCCTGAA  497

seq1  AAGAGTGTGATCTTCCTAGAGCAAGAAGAAACTGATGAAAAGAAAGATGT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGATCTTCCTAGAGCAAGAAGAAACTGATGAAAAGAAAGATGT  547

seq1  GTGCAGGCAACAACAAAGAGAAAAACGGGGCTATAGAATTTGAAAGACAG  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGCAACAACAAAGAGAAAAACGGGGCTATAGAATTTGAAAGACAG  597

seq1  CAAGGGGTGGGGTATATGAGATTTTTTGGAGGGAGGAAGGGGAAATAAGT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTGGGGTATATGAGATTTTTTGGAGGGAGGAAGGGGAAATAAGT  647

seq1  AATATAATTATATTATAATGTCAAAAATAAATGAAAACCTATTTTAAAAC  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTATATTATAATGTCAAAAATAAATGAAAACCTATTTTAAAAC  697

seq1  CTATTCATATTAGAGAGACCAGTCTTGTATACTGGAATGGGATGTGGGTG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATATTAGAGAGACCAGTCTTGTATACTGGAATGGGATGTGGGTG  747

seq1  AACAAAAATGACAAAGTCCTATTAACCAATGGAAACAGGAAAAAGTCTTT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATGACAAAGTCCTATTAACCAATGGAAACAGGAAAAAGTCTTT  797

seq1  CTCAAAACATCAGCCTGATGAAGCCAACGGTCATTTAATATGCTGTGTGT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACATCAGCCTGATGAAGCCAACGGTCATTTAATATGCTGTGTGT  847

seq1  CTGATTCTTCATTCCTTAACTTGATCTTTACATTCTTACATTGCTACTGT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTTCATTCCTTAACTTGATCTTTACATTCTTACATTGCTACTGT  897

seq1  ATACCATCTGTAGCACAGTTCTTATGCCCTAGTTGGTATCATTCCCTTAC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATCTGTAGCACAGTTCTTATGCCCTAGTTGGTATCATTCCCTTAC  947

seq1  ATCACATCCTTTGCTCTATGTCCTTCCCCAACACTTGGCTCTTGGGTCTT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCCTTTGCTCTATGTCCTTCCCCAACACTTGGCTCTTGGGTCTT  997

seq1  AGTGTTACCTTGCTGGACAATGTCCAGCAAGCCACTTCCAGTCTCTGAGC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACCTTGCTGGACAATGTCCAGCAAGCCACTTCCAGTCTCTGAGC  1047

seq1  CTCCATGACTTCATCTTGATAGTAGGCACTGGGCGAAGGCATCAGTAACT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGACTTCATCTTGATAGTAGGCACTGGGCGAAGGCATCAGTAACT  1097

seq1  TCCTTGTTTGATCAAATGTTCCATGAGCCTATGAATATTCAGGAGAATTC  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTTTGATCAAATGTTCCATGAGCCTATGAATATTCAGGAGAATTC  1147


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