BAC Information

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BAC

Clone NameB6Ng01-238O03
Chromosome14 (Build37)
Map Location 10,637,064 - 10,794,063
singlet/doubletdoublet
Overlap geneFhit, LOC100042415
Upstream geneLOC100041948
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O03.bB6Ng01-238O03.g
ACCGA049459GA049460
length1,1111,114
definitionB6Ng01-238O03.b B6Ng01-238O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,637,064 - 10,638,186)(10,792,932 - 10,794,063)
sequence
gaattccagattcaaggacagatctgtttgactctaacaattttttttct
taattatgaattataaattggtagagttgtttaactttaaaggattttgt
gactaaataaatgaataaagttaccatggggacaaagagagaacacaatt
tagatattggatatgaattggtaaacagatgtatgtcactaaaaagccat
agttttcattgtaatagtgtactgtctcttgccaaaaaccccaggaaagc
tgttttcatactgcagaaatgcagctggttaaaaggggaataaatgtggt
caagtacctaagacagttaattcattcattgccaagaacctgcatgcaat
gtttataaaaaggaagcaagctacaagtgagctgactcataagaatttgt
ttttaataattttaatagtttaaagacttttgatgtcaataacttcattt
tgtcaatttctctactagtagtctgtattcctgcattacttagtgttctt
ctgccgtgataaagcaccatggccaagacaagttacaaaagggtttatgt
ggccttccgcttccgaaaggaggagagagagcccatccctatcatggcag
tgaggcacagcagcaggcaggcatggcagtgaggcacagcagcaggcagg
catggcagtgaggcacagcagcaggcaggcatggcagtgaggcacagcag
caggcaggcatggcagtgaggcacagcagcaggcaggcatggcagtgagg
cacagcagcaggcaggcatgacagtgaggcacagcagcaggcaggcctgg
caagctgcggactcagatttttttaattgggtatttatttcatttacatt
tccaatgctatcccaaaagtcccccacatgctcccccacccactccccca
cccacccactcccacttcttggccctgtcattcccctgtactgaggcata
taaaggtttgcaagaccaagggactctcttcaagtgatggccgactaagc
atttctgatcaaatgcagttaaggacagagcctccaggggatactgggta
gttcatattgttgtcactataggttgcgaaccctttaggctctaggtact
ttcctagctcc

gaattctgagaagtccacagtcagccagattcgatgaaggaaggagcttc
aggttcaaagatagactctgtctcaggagagtacattgcagaacaataga
gacagacacatctttttgttatcttaactccagtgaacatatgcaggcag
gcacacttgcatttgtacatgtgtacagcacacacacacacacacacaca
cacacacacaagaatcgtgaataacaatcaagtaaactgttgtcttccca
gccccttttgctctaactatcatactgtaatctcagggatttgatgatat
ttttggatgcaaaccagagaatgaaatccaaagctgtaacaataaactac
caatggccagccggctatgcagtaagactcctacttaagagcctggaagc
agaaacaactcaggatcttttttttttttttaatattttttaaatacttt
ttgttttttgaactgggagatagcaatcagggtatagtgctaggtgctac
gtgcttgtaattccagtgttggagacatagatagaaggaaatgcctgggg
tcactggccagaggactagcaaaatggcaactctcaggtcttgctgagag
agcctgtctcaaaaataaagggaggtggcatctaagtaatgatagctaag
ggtttattctgtgctctacacacattcatgcacactcatccatatatgag
tgtacacacacagctacacacgcatacatatgtacatacacacacataca
cagttaaaaaactgtttcatgaataactcaattctacacttgtcccaatc
tcaagcaagtaagtttgtctgcatatgcccacagtgaagattttcatggt
ttcgaaacaactacaaagaattttgtaactgcactattcggctgaagaac
aaaggctttcttgtgcagttctcttggagcctggcagaacaagctgtcta
gctgatctgtgagtcagttagacagacaaagaaatggatcttgtttgtga
tgtggagcttgctgttactcatgtgactcatttaagcagagtcttttata
aacatacactgctttgtgaagcactgggaatgttcattgagaaagtttta
actgctgtgtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10637064_10638186
seq2: B6Ng01-238O03.b_48_1158

seq1  GAATTCCAGATTCAAGGACAGATCTGTTTGACTCTAACAATTTTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATTCAAGGACAGATCTGTTTGACTCTAACAATTTTTTTTCT  50

seq1  TAATTATGAATTATAAATTGGTAGAGTTGTTTAACTTTAAAGGATTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGAATTATAAATTGGTAGAGTTGTTTAACTTTAAAGGATTTTGT  100

seq1  GACTAAATAAATGAATAAAGTTACCATGGGGACAAAGAGAGAACACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATAAATGAATAAAGTTACCATGGGGACAAAGAGAGAACACAATT  150

seq1  TAGATATTGGATATGAATTGGTAAACAGATGTATGTCACTAAAAAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTGGATATGAATTGGTAAACAGATGTATGTCACTAAAAAGCCAT  200

seq1  AGTTTTCATTGTAATAGTGTACTGTCTCTTGCCAAAAACCCCAGGAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATTGTAATAGTGTACTGTCTCTTGCCAAAAACCCCAGGAAAGC  250

seq1  TGTTTTCATACTGCAGAAATGCAGCTGGTTAAAAGGGGAATAAATGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATACTGCAGAAATGCAGCTGGTTAAAAGGGGAATAAATGTGGT  300

seq1  CAAGTACCTAAGACAGTTAATTCATTCATTGCCAAGAACCTGCATGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCTAAGACAGTTAATTCATTCATTGCCAAGAACCTGCATGCAAT  350

seq1  GTTTATAAAAAGGAAGCAAGCTACAAGTGAGCTGACTCATAAGAATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAAAAGGAAGCAAGCTACAAGTGAGCTGACTCATAAGAATTTGT  400

seq1  TTTTAATAATTTTAATAGTTTAAAGACTTTTGATGTCAATAACTTCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAATTTTAATAGTTTAAAGACTTTTGATGTCAATAACTTCATTT  450

seq1  TGTCAATTTCTCTACTAGTAGTCTGTATTCCTGCATTACTTAGTGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTCTCTACTAGTAGTCTGTATTCCTGCATTACTTAGTGTTCTT  500

seq1  CTGCCGTGATAAAGCACCATGGCCAAGACAAGTTACAAAAGGGTTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGTGATAAAGCACCATGGCCAAGACAAGTTACAAAAGGGTTTATGT  550

seq1  GGCCTTCCGCTTCCGAAAGGAGGAGAGAGAGCCCATCCCTATCATGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCGCTTCCGAAAGGAGGAGAGAGAGCCCATCCCTATCATGGCAG  600

seq1  TGAGGCACAGCAGCAGGCAGGCATGGCAGTGAGGCACAGCAGCAGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCACAGCAGCAGGCAGGCATGGCAGTGAGGCACAGCAGCAGGCAGG  650

seq1  CATGGCAGTGAGGCACAGCAGCAGGCAGGCATGGCAGTGAGGCACAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGTGAGGCACAGCAGCAGGCAGGCATGGCAGTGAGGCACAGCAG  700

seq1  CAGGCAGGCATGGCAGTGAGGCACAGCAGCAGGCAGGCATGGCAGTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCATGGCAGTGAGGCACAGCAGCAGGCAGGCATGGCAGTGAGG  750

seq1  CACAGCAGCAGGCAGGCATGACAGTGAGGCACAGCAGCAGGCAGGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCAGGCAGGCATGACAGTGAGGCACAGCAGCAGGCAGGCCTGG  800

seq1  CAAGCTGCGGACTCAGATTTTTTTAATTGGGTATTTATTTCATTTACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCGGACTCAGATTTTTTTAATTGGGTATTTATTTCATTTACATT  850

seq1  TCCAATGCTATCCCAAAAGTCCCCCACATGCTCCCCCACCCACTCCCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTATCCCAAAAGTCCCCCACATGCTCCCCCACCCACTCCCCCA  900

seq1  CCCACCCACTCCCACTTCTTGGCCCTGTCATTCCCCTGTACTGAGGCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACTCCCACTTCTTGGCCCTGTCATTCCCCTGTACTGAGGCATA  950

seq1  TAAA-GTTTGCAAGACCAAGGGACCTCTCTTTCCAGTGATGGCCGACTAG  999
      |||| |||||||||||||||||| ||||| ||| ||||||||||||||| 
seq2  TAAAGGTTTGCAAGACCAAGGGA-CTCTC-TTCAAGTGATGGCCGACTAA  998

seq1  GCCATTTTCTGATTCAAATGCAGTTAGGGACAGGAGCTCCAGGGGGATAC  1049
      ||   ||||||| ||||||||||||| ||||||   ||||| ||||||||
seq2  GC--ATTTCTGA-TCAAATGCAGTTAAGGACAGAGCCTCCA-GGGGATAC  1044

seq1  TGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTA-G  1098
      ||| ||||||||||||||||  || ||||| |||||| || ||||||| |
seq2  TGGGTAGTTCATATTGTTGT--CA-CTATA-GGTTGC-GAACCCTTTAGG  1089

seq1  CTCCTTGGGTACTTTCTCTAGCTCC  1123
      |||  | ||||||||| ||||||||
seq2  CTC--TAGGTACTTTC-CTAGCTCC  1111


seq1: chr14_10792932_10794063
seq2: B6Ng01-238O03.g_65_1178 (reverse)

seq1  TGAGACACAGCAGTTAAAAACTTTTCTTCCAAATGAACATTTTCCAGGTG  50
      |||||||||||||||||||  || ||     ||||||||  ||||  |||
seq2  TGAGACACAGCAGTTAAAACTTTCTC-----AATGAACA--TTCCCAGTG  43

seq1  CTTCACAAAGCAGTGGTTATGTTTATAAAAGACTTCTGCTTAAATGAGTC  100
      |||||||||||||||  |||||||||||||||| ||||||||||||||||
seq2  CTTCACAAAGCAGTG--TATGTTTATAAAAGAC-TCTGCTTAAATGAGTC  90

seq1  ACATGAGTAACAGCCAAGCTTCCACAATCACAAACAAGAATCCCTTTTCT  150
      ||||||||||||| ||||| ||||| |||||||||||||   || |||||
seq2  ACATGAGTAACAG-CAAGC-TCCAC-ATCACAAACAAGA--TCCATTTCT  135

seq1  TTGTCTGGTCCTAACCTTGACTCACAGATCAGCTAGACAGCTTGTTCTGC  200
      |||||||   |||||  |||||||||||||||||||||||||||||||||
seq2  TTGTCTG--TCTAAC--TGACTCACAGATCAGCTAGACAGCTTGTTCTGC  181

seq1  CAGGCTCCAAGAGAACTGCACAAGAAAGCCTTTG-TCTTCAGCCGAATAG  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGGCTCCAAGAGAACTGCACAAGAAAGCCTTTGTTCTTCAGCCGAATAG  231

seq1  TGCAGTTACAAAATTCTTTGTAGTTGTTTCG-AACCATGAAAATCTTCAC  298
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCAGTTACAAAATTCTTTGTAGTTGTTTCGAAACCATGAAAATCTTCAC  281

seq1  TGTGGGCATATGCAGACAAACTTACTTGCTTTGAGATTGGGACAAGTGTA  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTGGGCATATGCAGACAAACTTACTTGC-TTGAGATTGGGACAAGTGTA  330

seq1  GAATTGAGTTATTCATGAAACAGTTTTTTAACTGTGTATGTGTGTGTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGTTATTCATGAAACAGTTTTTTAACTGTGTATGTGTGTGTATG  380

seq1  TACATATGTATGCGTGTGTAGCTGTGTGTGTACACTCATATATGGATGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTATGCGTGTGTAGCTGTGTGTGTACACTCATATATGGATGAG  430

seq1  TGTGCATGAATGTGTGTAGAGCACAGAATAAACCCTTAGCTATCATTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGAATGTGTGTAGAGCACAGAATAAACCCTTAGCTATCATTACT  480

seq1  TAGATGCCACCTCCCTTTATTTTTGAGACAGGCTCTCTCAGCAAGACCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCCACCTCCCTTTATTTTTGAGACAGGCTCTCTCAGCAAGACCTG  530

seq1  AGAGTTGCCATTTTGCTAGTCCTCTGGCCAGTGACCCCAGGCATTTCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCCATTTTGCTAGTCCTCTGGCCAGTGACCCCAGGCATTTCCTT  580

seq1  CTATCTATGTCTCCAACACTGGAATTACAAGCACGTAGCACCTAGCACTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATGTCTCCAACACTGGAATTACAAGCACGTAGCACCTAGCACTA  630

seq1  TACCCTGATTGCTATCTCCCAGTTCAAAAAACAAAAAGTATTTAAAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGATTGCTATCTCCCAGTTCAAAAAACAAAAAGTATTTAAAAAAT  680

seq1  ATTAAAAAAAAAAAAAAGATCCTGAGTTGTTTCTGCTTCCAGGCTCTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAAAAAAAGATCCTGAGTTGTTTCTGCTTCCAGGCTCTTAA  730

seq1  GTAGGAGTCTTACTGCATAGCCGGCTGGCCATTGGTAGTTTATTGTTACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGTCTTACTGCATAGCCGGCTGGCCATTGGTAGTTTATTGTTACA  780

seq1  GCTTTGGATTTCATTCTCTGGTTTGCATCCAAAAATATCATCAAATCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGATTTCATTCTCTGGTTTGCATCCAAAAATATCATCAAATCCCT  830

seq1  GAGATTACAGTATGATAGTTAGAGCAAAAGGGGCTGGGAAGACAACAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACAGTATGATAGTTAGAGCAAAAGGGGCTGGGAAGACAACAGTT  880

seq1  TACTTGATTGTTATTCACGATTCTTGTGTGTGTGTGTGTGTGTGTGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATTGTTATTCACGATTCTTGTGTGTGTGTGTGTGTGTGTGTGTG  930

seq1  TGTGTGCTGTACACATGTACAAATGCAAGTGTGCCTGCCTGCATATGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGTACACATGTACAAATGCAAGTGTGCCTGCCTGCATATGTTC  980

seq1  ACTGGAGTTAAGATAACAAAAAGATGTGTCTGTCTCTATTGTTCTGCAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTAAGATAACAAAAAGATGTGTCTGTCTCTATTGTTCTGCAAT  1030

seq1  GTACTCTCCTGAGACAGAGTCTATCTTTGAACCTGAAGCTCCTTCCTTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCCTGAGACAGAGTCTATCTTTGAACCTGAAGCTCCTTCCTTCA  1080

seq1  TCGAATCTGGCTGACTGTGGACTTCTCAGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  TCGAATCTGGCTGACTGTGGACTTCTCAGAATTC  1114


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