BAC Information

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BAC

Clone NameB6Ng01-239F09
Chromosome14 (Build37)
Map Location 111,857,272 - 112,048,131
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239F09.bB6Ng01-239F09.g
ACCGA049788GA049789
length1,1551,178
definitionB6Ng01-239F09.b B6Ng01-239F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,857,272 - 111,858,419)(112,046,954 - 112,048,131)
sequence
gaattcaaagcaagataattggatttgtgtatggtttgttgactgatgtt
caggttcattagtgtgaactacccatgaaggtcatgtcgatgaaaaggtc
agttatgaatcagtgatagacccacagaaagccctatccctccttgatga
actactgtctactattggtttctggggaagaggaaatattttttgtcact
tgtatactcattgaaaggcccccaagctccatgggatggctccaagtcca
cagtcatacaaatagacctgcttaatttcagtttatctaaataaaatggg
aggtaatataagataggaataaggatacaaaagtggtaagacaagatggg
gattcacaattattagaatgcactttacatacagtatgaaacagtcaaag
aacacatttatgaaaggtttaaaaagtgaataaatattttagagatcatc
tatacaccacaaaacagcaagaaatcaaggtataaatacaaaccaattct
gtgaattggttgactatttaaaacaagtcatatcctaaacatattttctc
atcatgtgtttctgttgtttatttcctcattttattaaataggcaaatgg
aggctgtaattgtggaaaatatgtgacataatacattataattttagtat
tgagaggaataaataacttattatttatataatttatacattcttgctta
atgttaattttgttaaaagatccctgtagactaagtagcaaacatcactg
ttataaagttctattttttaaatacatcatattttttcttttctccatgt
cttacttcttccaaatgtttgtaatcattaacaataggaaaaactaatta
ttctagtcttttgtccaggtatgacaatttctataaagcatgccccaaaa
aatttctggaacaaaatttatgaaaaaaataggtagtttctttattttac
tctaatacacatttgttgttattttaattagcttcctattagaatatttt
ttgagttatctatgtttttccactttaaattcactttttctaagcaattt
aattttagttttatttaagaatgggaatggattcacccactggattgtca
agaaagtaaattgaaattaacactgaaaaatatggttcatttgtctagtt
ttttt

gaattcctttccatagggtgagcaatgagttcataagaaaattatgaagc
tagagtcataaacacgtgttctcactggtacaaacaagtctagtcaagct
tagtttactgtagacaaagtttctctgtgataagtgtgtcctaccatttc
tataatttagacaataacttccgcatgttaattttctttctatgatttga
ttaatctgtatttgtctaatgccaattaatacattataataggtctatat
tttagattatgttatcaaacttcatattttatccttattgttttgatgaa
cttacttagtaattatatagtgtgtattctatattatgatttctctcatt
ctctgcttatttgccatgactatctatcaccagacatctcaatcagtcac
ttttctgattcatgatgtgttaaccatttactttacccaaggccatctgt
ttgactatagaatcaatactggatcctggtgtagttatcagttggtacac
aacaaaagtcaatgattttctctgtttctaaatctatcagtagaccagag
atcagcaatgagaagtagaattatgacccctgtgccacccggcattcata
actggctgttgtacacatgcattatatgtacaaatccattatagcatctt
cagctgctgtgagttcctgattccaatgcttgttcattgtcttggagaaa
actttcaaagatcagttgcctagcttcctggcttcccagattcctgctcc
cactttcttactgaatattctttcacaataagtaggagacaacagagaag
cagacattcctacaaatgtcttcaggaatatatgtaaaaagaccaaacag
aaatctaatgtaatatataatgctttattttattaaatcatttttataga
tatttgttttacactaagcaaaatttaatgtagtgacttaatgtatttaa
tataatgattcagtggaggagttttttatgaacattccatgagtttccaa
tgcttattttttcatattttattaaatattttaaaatgttgcttatttta
gctaaattatgtgcttctgtttctacacatttacataacttgttagagtt
aattttggagataatccacacaaactgtttgaacatctcttagaggttac
aatacctgactagtgttaagtgattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111857272_111858419
seq2: B6Ng01-239F09.b_47_1201

seq1  GAATTCAAAGCAAGATAATTGGATTTGTGTATGGTTTGTTGACTGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAAGATAATTGGATTTGTGTATGGTTTGTTGACTGATGTT  50

seq1  CAGGTTCATTAGTGTGAACTACCCATGAAGGTCATGTCGATGAAAAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCATTAGTGTGAACTACCCATGAAGGTCATGTCGATGAAAAGGTC  100

seq1  AGTTATGAATCAGTGATAGACCCACAGAAAGCCCTATCCCTCCTTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAATCAGTGATAGACCCACAGAAAGCCCTATCCCTCCTTGATGA  150

seq1  ACTACTGTCTACTATTGGTTTCTGGGGAAGAGGAAATATTTTTTGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTCTACTATTGGTTTCTGGGGAAGAGGAAATATTTTTTGTCACT  200

seq1  TGTATACTCATTGAAAGGCCCCCAAGCTCCATGGGATGGCTCCAAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTCATTGAAAGGCCCCCAAGCTCCATGGGATGGCTCCAAGTCCA  250

seq1  CAGTCATACAAATAGACCTGCTTAATTTCAGTTTATCTAAATAAAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATACAAATAGACCTGCTTAATTTCAGTTTATCTAAATAAAATGGG  300

seq1  AGGTAATATAAGATAGGAATAAGGATACAAAAGTGGTAAGACAAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATAAGATAGGAATAAGGATACAAAAGTGGTAAGACAAGATGGG  350

seq1  GATTCACAATTATTAGAATGCACTTTACATACAGTATGAAACAGTCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACAATTATTAGAATGCACTTTACATACAGTATGAAACAGTCAAAG  400

seq1  AACACATTTATGAAAGGTTTAAAAAGTGAATAAATATTTTAGAGATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTATGAAAGGTTTAAAAAGTGAATAAATATTTTAGAGATCATC  450

seq1  TATACACCACAAAACAGCAAGAAATCAAGGTATAAATACAAACCAATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACCACAAAACAGCAAGAAATCAAGGTATAAATACAAACCAATTCT  500

seq1  GTGAATTGGTTGACTATTTAAAACAAGTCATATCCTAAACATATTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGGTTGACTATTTAAAACAAGTCATATCCTAAACATATTTTCTC  550

seq1  ATCATGTGTTTCTGTTGTTTATTTCCTCATTTTATTAAATAGGCAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGTTTCTGTTGTTTATTTCCTCATTTTATTAAATAGGCAAATGG  600

seq1  AGGCTGTAATTGTGGAAAATATGTGACATAATACATTATAATTTTAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTAATTGTGGAAAATATGTGACATAATACATTATAATTTTAGTAT  650

seq1  TGAGAGGAATAAATAACTTATTATTTATATAATTTATACATTCTTGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAATAAATAACTTATTATTTATATAATTTATACATTCTTGCTTA  700

seq1  ATGTTAATTTTGTTAAAAGATCCCTGTAGACTAAGTAGCAAACATCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATTTTGTTAAAAGATCCCTGTAGACTAAGTAGCAAACATCACTG  750

seq1  TTATAAAGTTCTATTTTTTAAATACATCATATTTTTTCTTTTCTCCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTTCTATTTTTTAAATACATCATATTTTTTCTTTTCTCCATGT  800

seq1  CTTACTTCTTCCAAATGTTTGTAATCATTAACAATAGGAAAAACTAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTTCCAAATGTTTGTAATCATTAACAATAGGAAAAACTAATTA  850

seq1  TTCTAGTCTTTTGTCCAGGTATGACAATTTCTATAAAGCATGCCCCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCTTTTGTCCAGGTATGACAATTTCTATAAAGCATGCCCCAAAA  900

seq1  AA-TTCTGGAACAAAATTTATG-AAAAAATAGGTAGTTTCTTTTATTTTA  948
      || ||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  AATTTCTGGAACAAAATTTATGAAAAAAATAGGTAGTTTC-TTTATTTTA  949

seq1  CTCTAATACACATTTGTTGTTTATTTTAATTAGCTTCCTATTTAGATA-T  997
      ||||||||||||||||||| ||||||||||||||||||||||   ||| |
seq2  CTCTAATACACATTTGTTG-TTATTTTAATTAGCTTCCTATTAGAATATT  998

seq1  TTTTGAGTTATCTATG-TTTTCCACTTAAATTTCAC-TTTTCTAAGCAAT  1045
      |||||||||||||||| |||||||||| || ||||| |||||||||||||
seq2  TTTTGAGTTATCTATGTTTTTCCACTTTAAATTCACTTTTTCTAAGCAAT  1048

seq1  TTAATTTTAG---TATATTAG-ATGGG-ATGATTTCA-CCACT-GATTGT  1088
      ||||||||||   ||| | || ||||| |||  |||| ||||| ||||||
seq2  TTAATTTTAGTTTTATTTAAGAATGGGAATGGATTCACCCACTGGATTGT  1098

seq1  CCAAAGAAGTAATTTGAAAATTTACACTGATATATGT-TTTCATTTTTTT  1137
       |||  |||||| ||| ||||| ||||||| | || |  ||||  ||| |
seq2  -CAAGAAAGTAAATTG-AAATTAACACTGAAAAATATGGTTCA--TTTGT  1144

seq1  CTAGTTTTTTT  1148
      |||||||||||
seq2  CTAGTTTTTTT  1155


seq1: chr14_112046954_112048131
seq2: B6Ng01-239F09.g_66_1243 (reverse)

seq1  AGTAATCAC-TAACACTTATTCAGTTATTGTAACATTCTAGAGATGGTTT  49
      ||||||||| |||||| || |||| ||||||||| |   |||||||  ||
seq2  AGTAATCACTTAACAC-TAGTCAGGTATTGTAACCTCTAAGAGATG--TT  47

seq1  TAAACAGTTTGTGTGGATTATCT-CAAAATTAACTCTAAACAAGTAATGT  98
       |||||||||||||||||||||| ||||||||||||| ||||||| ||||
seq2  CAAACAGTTTGTGTGGATTATCTCCAAAATTAACTCT-AACAAGTTATGT  96

seq1  AAATTGTGTTAGGAAACAGAAGCACAT-ATTTAGCTAAAATAAGCAACAT  147
      ||| |||||   ||||||||||||||| ||||||||||||||||||||||
seq2  AAA-TGTGT--AGAAACAGAAGCACATAATTTAGCTAAAATAAGCAACAT  143

seq1  TTT-AAATATTTAATAAAATATGAAAAA--TAGCATTGGAAACTCATGGA  194
      ||| ||||||||||||||||||||||||   |||||||||||||||||||
seq2  TTTAAAATATTTAATAAAATATGAAAAAATAAGCATTGGAAACTCATGGA  193

seq1  ATGTTCAT-AAAAACTCCTCCACTGAATCATTATATTAAATACATTAAGT  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATAAAAAACTCCTCCACTGAATCATTATATTAAATACATTAAGT  243

seq1  CACTACATTAAATTTTGCTTAGTGTAAAACAAATATCTATAAAAATGATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATTAAATTTTGCTTAGTGTAAAACAAATATCTATAAAAATGATT  293

seq1  TAATAAAATAAAGCATTATATATTACATTAGATTTCTGTTTGGTCTTTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATAAAGCATTATATATTACATTAGATTTCTGTTTGGTCTTTTT  343

seq1  ACATATATTCCTGAAGACATTTGTAGGAATGTCTGCTTCTCTGTTGTCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTCCTGAAGACATTTGTAGGAATGTCTGCTTCTCTGTTGTCTC  393

seq1  CTACTTATTGTGAAAGAATATTCAGTAAGAAAGTGGGAGCAGGAATCTGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATTGTGAAAGAATATTCAGTAAGAAAGTGGGAGCAGGAATCTGG  443

seq1  GAAGCCAGGAAGCTAGGCAACTGATCTTTGAAAGTTTTCTCCAAGACAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGGAAGCTAGGCAACTGATCTTTGAAAGTTTTCTCCAAGACAAT  493

seq1  GAACAAGCATTGGAATCAGGAACTCACAGCAGCTGAAGATGCTATAATGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGCATTGGAATCAGGAACTCACAGCAGCTGAAGATGCTATAATGG  543

seq1  ATTTGTACATATAATGCATGTGTACAACAGCCAGTTATGAATGCCGGGTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACATATAATGCATGTGTACAACAGCCAGTTATGAATGCCGGGTG  593

seq1  GCACAGGGGTCATAATTCTACTTCTCATTGCTGATCTCTGGTCTACTGAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGGTCATAATTCTACTTCTCATTGCTGATCTCTGGTCTACTGAT  643

seq1  AGATTTAGAAACAGAGAAAATCATTGACTTTTGTTGTGTACCAACTGATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGAAACAGAGAAAATCATTGACTTTTGTTGTGTACCAACTGATA  693

seq1  ACTACACCAGGATCCAGTATTGATTCTATAGTCAAACAGATGGCCTTGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACCAGGATCCAGTATTGATTCTATAGTCAAACAGATGGCCTTGGG  743

seq1  TAAAGTAAATGGTTAACACATCATGAATCAGAAAAGTGACTGATTGAGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAATGGTTAACACATCATGAATCAGAAAAGTGACTGATTGAGAT  793

seq1  GTCTGGTGATAGATAGTCATGGCAAATAAGCAGAGAATGAGAGAAATCAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGATAGATAGTCATGGCAAATAAGCAGAGAATGAGAGAAATCAT  843

seq1  AATATAGAATACACACTATATAATTACTAAGTAAGTTCATCAAAACAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAATACACACTATATAATTACTAAGTAAGTTCATCAAAACAATA  893

seq1  AGGATAAAATATGAAGTTTGATAACATAATCTAAAATATAGACCTATTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAATATGAAGTTTGATAACATAATCTAAAATATAGACCTATTAT  943

seq1  AATGTATTAATTGGCATTAGACAAATACAGATTAATCAAATCATAGAAAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTAATTGGCATTAGACAAATACAGATTAATCAAATCATAGAAAG  993

seq1  AAAATTAACATGCGGAAGTTATTGTCTAAATTATAGAAATGGTAGGACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAACATGCGGAAGTTATTGTCTAAATTATAGAAATGGTAGGACAC  1043

seq1  ACTTATCACAGAGAAACTTTGTCTACAGTAAACTAAGCTTGACTAGACTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCACAGAGAAACTTTGTCTACAGTAAACTAAGCTTGACTAGACTT  1093

seq1  GTTTGTACCAGTGAGAACACGTGTTTATGACTCTAGCTTCATAATTTTCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACCAGTGAGAACACGTGTTTATGACTCTAGCTTCATAATTTTCT  1143

seq1  TATGAACTCATTGCTCACCCTATGGAAAGGAATTC  1178
      |||||||||||||||||||||||||||||||||||
seq2  TATGAACTCATTGCTCACCCTATGGAAAGGAATTC  1178


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