BAC Information

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BAC

Clone NameB6Ng01-242F05
Chromosome14 (Build37)
Map Location 17,297,798 - 17,428,081
singlet/doubletdoublet
Overlap geneRarb
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F05.bB6Ng01-242F05.g
ACCGA052002GA052003
length2811,113
definitionB6Ng01-242F05.b B6Ng01-242F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,427,801 - 17,428,081)(17,297,798 - 17,298,878)
sequence
catgataaagacatcagagcctcagtaagtaaacatccacacaacatatg
tgtacatttgcttatgtgagggcacactgtcatatactactatctatggc
tttttacatttggtttgtatgaaatgttataaacttatattatgtaaaag
tttaaataacatggaagggctggtaaataattgggcttctgtttatactt
cttagttatcaatttgcatttgcttcatttttaaagatcttgttctctct
ctctctctctctctctctctgtgtgtgtgtg

gaattcatggtgcatgtttcagctctgctcacactgaactgagtgtaggc
tcctagttcaaggcagcccagcactggctttctgttgcaaagaccctcag
gttttttgttcatgcctctgtggccagagatggggtctgatcagtcatga
ttcctataaataggcacagtagacatcttgggcctttatgaaaatcccaa
cagtgctttcaaagagagagagagagagagtaggctccaaatagacagca
aaggctagagcctcaaccctgcccaccatgatccagtactgaggtgttcc
atggatgttatttcatgatccttaaatggaatggtgagacacagcttttt
aagtaagctgacctttcttattaactgcaattcctgagctggagtccaat
ttagaaagttgcttgacacaggacccaggcagccaccagcagccaccacc
actttctctgcatgaaagcaacgaagcagcatctgaggcagcctggcctc
tgcagtcctggttatgcacacttactcattccccaccttctcctcctact
ctctttagatggcaggctacttgacaggtatagacaaagacatcaatggc
cctgtgcacgcagtacaaggtataagccttacctagtttatggtgtggtc
caaggttggctgaagtgttatgcctgttacaaggaggtattacagaggta
gtctctccagaatgaagggaaagaattccttccactatcctcgatttcaa
ataacgcacgagaacccaatccctaatctagccagcagccattatagtgg
tgtctgaagtaagatgggtgctaagtaatttttgataggaaatttttcat
tagttaggcactgtatttatttactttcagccccaagcaacccaggtggc
cctggcagtagaagtctaaaaatctcggattcctaaccccttctaagcta
cttcaacaaacggttcacggatagttttcatctgggaggccctcagccac
cataatcagaggcacaggttgaaagtcactactaaacttccaggcccagc
agaacttcctctggggactcattacttcttcaaaagaaacttctgatggg
gtcctggcactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17427801_17428081
seq2: B6Ng01-242F05.b_53_333 (reverse)

seq1  CACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAGATCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAGATCTTTA  50

seq1  AAAATGAAGCAAATGCAAATTGATAACTAAGAAGTATAAACAGAAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGCAAATGCAAATTGATAACTAAGAAGTATAAACAGAAGCCCA  100

seq1  ATTATTTACCAGCCCTTCCATGTTATTTAAACTTTTACATAATATAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACCAGCCCTTCCATGTTATTTAAACTTTTACATAATATAAGTT  150

seq1  TATAACATTTCATACAAACCAAATGTAAAAAGCCATAGATAGTAGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTTCATACAAACCAAATGTAAAAAGCCATAGATAGTAGTATAT  200

seq1  GACAGTGTGCCCTCACATAAGCAAATGTACACATATGTTGTGTGGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTGCCCTCACATAAGCAAATGTACACATATGTTGTGTGGATGTT  250

seq1  TACTTACTGAGGCTCTGATGTCTTTATCATG  281
      |||||||||||||||||||||||||||||||
seq2  TACTTACTGAGGCTCTGATGTCTTTATCATG  281


seq1: chr14_17297798_17298878
seq2: B6Ng01-242F05.g_67_1179

seq1  GAATTCATGGTGCATGTTTCAGCTCTGCTCACACTGAACTGAGTGTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTGCATGTTTCAGCTCTGCTCACACTGAACTGAGTGTAGGC  50

seq1  TCCTAGTTCAAGGCAGCCCAGCACTGGCTTTCTGTTGCAAAGACCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCAAGGCAGCCCAGCACTGGCTTTCTGTTGCAAAGACCCTCAG  100

seq1  GTTTTTTGTTCATGCCTCTGTGGCCAGAGATGGGGTCTGATCAGTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTCATGCCTCTGTGGCCAGAGATGGGGTCTGATCAGTCATGA  150

seq1  TTCCTATAAATAGGCACAGTAGACATCTTGGGCCTTTATGAAAATCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAAATAGGCACAGTAGACATCTTGGGCCTTTATGAAAATCCCAA  200

seq1  CAGTGCTTTCAAAGAGAGAGAGAGAGAGAGTAGGCTCCAAATAGACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTCAAAGAGAGAGAGAGAGAGAGTAGGCTCCAAATAGACAGCA  250

seq1  AAGGCTAGAGCCTCAACCCTGCCCACCATGATCCAGTACTGAGGTGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGAGCCTCAACCCTGCCCACCATGATCCAGTACTGAGGTGTTCC  300

seq1  ATGGATGTTATTTCATGATCCTTAAATGGAATGGTGAGACACAGCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTTATTTCATGATCCTTAAATGGAATGGTGAGACACAGCTTTTT  350

seq1  AAGTAAGCTGACCTTTCTTATTAACTGCAATTCCTGAGCTGGAGTCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCTGACCTTTCTTATTAACTGCAATTCCTGAGCTGGAGTCCAAT  400

seq1  TTAGAAAGTTGCTTGACACAGGACCCAGGCAGCCACCAGCAGCCACCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGTTGCTTGACACAGGACCCAGGCAGCCACCAGCAGCCACCACC  450

seq1  ACTTTCTCTGCATGAAAGCAACGAAGCAGCATCTGAGGCAGCCTGGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTGCATGAAAGCAACGAAGCAGCATCTGAGGCAGCCTGGCCTC  500

seq1  TGCAGTCCTGGTTATGCACACTTACTCATTCCCCACCTTCTCCTCCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTGGTTATGCACACTTACTCATTCCCCACCTTCTCCTCCTACT  550

seq1  CTCTTTAGATGGCAGGCTACTTGACAGGTATAGACAAAGACATCAATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGATGGCAGGCTACTTGACAGGTATAGACAAAGACATCAATGGC  600

seq1  CCTGTGCACGCAGTACAAGGTATAAGCCTTACCTAGTTTATGGTGTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCACGCAGTACAAGGTATAAGCCTTACCTAGTTTATGGTGTGGTC  650

seq1  CAAGGTTGGCTGAAGTGTTATGCCTGTTACAAGGAGGTATTACAGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGGCTGAAGTGTTATGCCTGTTACAAGGAGGTATTACAGAGGTA  700

seq1  GTCTCTCCAGAATGAAGGGAAAGAATTCCTTCCACTATCCTCGATTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCAGAATGAAGGGAAAGAATTCCTTCCACTATCCTCGATTTCAA  750

seq1  ATAACGCACGAGAACCCAATCCCTAATCTAGCCAGCAGCCATTATAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACGCACGAGAACCCAATCCCTAATCTAGCCAGCAGCCATTATAGTGG  800

seq1  TGTCTGAAGTAAGATGGGTGCTAAGTAA-TTTTGATAGGAAATTTTTCAT  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCTGAAGTAAGATGGGTGCTAAGTAATTTTTGATAGGAAATTTTTCAT  850

seq1  TAGTTAGGCACTGTATTTATTTAC-TTCAGCCCCAAGC-ACCCAGGTGGC  897
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  TAGTTAGGCACTGTATTTATTTACTTTCAGCCCCAAGCAACCCAGGTGGC  900

seq1  CCT-GCAGTAGAAGTCT-AAAATCTC-GATTCCTAACCC--TCTAAGCTA  942
      ||| ||||||||||||| |||||||| ||||||||||||  |||||||||
seq2  CCTGGCAGTAGAAGTCTAAAAATCTCGGATTCCTAACCCCTTCTAAGCTA  950

seq1  CTTCAACAAAC-GTTCAC-GATAG-TTTCATCT-GGAG--CCTCAGCCA-  985
      ||||||||||| |||||| ||||| |||||||| ||||  ||||||||| 
seq2  CTTCAACAAACGGTTCACGGATAGTTTTCATCTGGGAGGCCCTCAGCCAC  1000

seq1  CAT-ATCAGA-GCACAG--TG-AAGTCACTAACTAAAC-TCCAG--CCAG  1027
      ||| |||||| ||||||  || |||||||| ||||||| |||||  ||||
seq2  CATAATCAGAGGCACAGGTTGAAAGTCACT-ACTAAACTTCCAGGCCCAG  1049

seq1  CAGAACT--CTCT-GGGACTCA-TAC-TCTTC---AGAGACTTCTGAT-G  1068
      |||||||  |||| |||||||| ||| |||||   ||| ||||||||| |
seq2  CAGAACTTCCTCTGGGGACTCATTACTTCTTCAAAAGAAACTTCTGATGG  1099

seq1  GGTCCT-GCACTGT  1081
      |||||| |||||||
seq2  GGTCCTGGCACTGT  1113


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