BAC Information

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BAC

Clone NameB6Ng01-242I06
Chromosome14 (Build37)
Map Location 70,013,666 - 70,161,956
singlet/doubletdoublet
Overlap geneLoxl2, R3hcc1, Chmp7
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4
Downstream geneTnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242I06.bB6Ng01-242I06.g
ACCGA052138GA052139
length1,0631,086
definitionB6Ng01-242I06.b B6Ng01-242I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,160,778 - 70,161,956)(70,013,666 - 70,014,731)
sequence
gaattctgcatcattgcaactgataaaaatgtgtgtaattagatgatttg
tgtgtgtgtgcgtgcacgcaaagctaggaaccgtgaagaacagaatttgg
tggcctagccccatgatggaaaaatctatcctcgtacctcacaagacatc
cctcctgaaagtgagctgcttttccattacagccggaattatgctcaaca
ggtaagtgttcttgaatacccagatgtgtacctctgtaactgtggcaagg
agtacaattcctagtcagagttcgcagctcatctgacaagccacatccat
aatcatctccctagccagggccacagcagcagccacaggccaagccacag
caaggaaaggaagtgttctctatacccccaggctttcatctctccttcca
aaccccacgtgcacttaatgggtcatatgggggaacccccacaagtgtga
tttttgtagcaagacttttggtgatccaagcaacctatagacacacctca
acattcatacaggtcagaagaattataggtgtactttgtgggacaagtct
ctcacgcagaaggctcacctggagtctcatatggccatccacacgggtga
gaagaatctcaagtgtgattcctgtgacaagctgtccatgcggagacagg
gcctcaagcagcccgtgctcatccgcccgcaagaacgccagaccaagcgt
ccgaagtgcaataaactgttcttgagaacaaaccacttgaagaagcatct
caattctcccggaggaaaacgagattatgtctgcaaacaatgtagaaagg
tcgatctaaccaagtgccacgtcactcaccacctgaagacctgccaagag
cctgcctccaggtcctcagcacaggacgaagatgcggacaagaagatctc
acagactccatgagggacagaggactgcaagatgagcagtgctatttact
caacagatgggtctctctccacacagaaatgagaggaaaaggcaactgct
tcggatgggaacataacattgggaaaacataaaacccaggtcactgtttg
tattttttattat
gaattcatttattcattctattttttttaatttagtttcttaggaattaa
aaagcattacatcctatgtatgtgtgtgcacatagaggccactgcattat
gtgtggaaatcagaggacaattttcacaagtcagttctcttccaccagag
tgggctctgcggattgacactggtcattaagcttgttgctagcaagtgct
ttcacctgctgagtcatcttgctggccccgttttctcatgattttcaaaa
aatgcatgtatctgagtccatccttaggaatgtggtgtctgtgagacgga
tgtttggtcttctagggagctgcaagtccagaggcagatgaatgtgaaag
caggtaggaacttggccagagctttgggcacagcaagctgatgttaaaga
gagtggaggcttgctaaagctgacccttgtagcaggctgttctttgagat
gtaggaagaatattagaaccaatcttagaaggagacttgagattggcact
agtgttgattggtgacagtagtaactgagaaagtctatcctgagcagtac
acaggagaactgtgaggcctctgggtacatgccaccgccctgcagatgcc
attatcttgagtgagcactggagacttggtaccagctggctttgtgcagc
cgagcccagccagcttcgctgatgtggcagttggtgcctgtttctaacgc
tctctgggctctctggtgggagccaaggctgccacgggcagcacagtccc
agctctgaggcttttaaacactttcagtacagcactctgactctgggaca
gccaagtgcttccagctgactatggcctctgctttgtcacccggtccctc
tctgggttttactctcatgaaaagagcacaaggttgaaatgatggactgt
tgaacccagttgtttccctctcagacccctccacttggttctccagcttt
ctgggagaatgccccagtgaagcatgaagggcctgagcctccctttgaat
ggttcaagcccttatcttagataaaggagtctgggaacttctggatgacc
tgtgttactcctcttcactttgactcccacaatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70160778_70161956
seq2: B6Ng01-242I06.b_47_1109 (reverse)

seq1  ATAATAAAAAAAAAAAAAACAAAAACAAAAACAAAACTCACTAGGACATT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTATAAGTGCTTTAGCTATCCCCACTCTGTCCACTTCTAACAGTGGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAGGATCAGAAAGCATTTCAT-ATAAAAATTAC-AACAGTGA-CTTGG  147
                           || ||||||| ||| |||||||| || ||
seq2  ---------------------ATAATAAAAAATACAAACAGTGACCTGGG  29

seq1  TTTTATGTTTTCCCAAATGTATGTT-CCATCCGAAGCAGTTGCCTTTTCC  196
      ||||||||||||||||   |||||| ||||||||||||||||||||||||
seq2  TTTTATGTTTTCCCAATGTTATGTTCCCATCCGAAGCAGTTGCCTTTTCC  79

seq1  TCTCATTTCTGTGTGGAGAGAGACCCATCTGTTGAGTAAATAGCACTGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTGTGTGGAGAGAGACCCATCTGTTGAGTAAATAGCACTGCT  129

seq1  CATCCTGCAGTCCTCTGT-CCTCATGGAGTCTGTGAGATCTTCTTGTCCG  295
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATCTTGCAGTCCTCTGTCCCTCATGGAGTCTGTGAGATCTTCTTGTCCG  179

seq1  CATCTTCGTCCTGTGCTGAGGACCTGGAGGCAGGCTCTTGGCAGGTCTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCGTCCTGTGCTGAGGACCTGGAGGCAGGCTCTTGGCAGGTCTTC  229

seq1  AGGTGGTGAGTGACGTGGCACTTGGTTAGATCGACCTTTCTACATTGTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGAGTGACGTGGCACTTGGTTAGATCGACCTTTCTACATTGTTT  279

seq1  GCAGACATAATCTCGTTTTCCTCCGGGAGAATTGAGATGCTTCTTCAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATAATCTCGTTTTCCTCCGGGAGAATTGAGATGCTTCTTCAAGT  329

seq1  GGTTTGTTCTCAAGAACAGTTTATTGCACTTCGGACGCTTGGTCTGGCGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTCTCAAGAACAGTTTATTGCACTTCGGACGCTTGGTCTGGCGT  379

seq1  TCTTGCGGGCGGATGAGCACGGGCTGCTTGAGGCCCTGTCTCCGCATGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCGGGCGGATGAGCACGGGCTGCTTGAGGCCCTGTCTCCGCATGGA  429

seq1  CAGCTTGTCACAGGAATCACACTTGAGATTCTTCTCACCCGTGTGGATGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTCACAGGAATCACACTTGAGATTCTTCTCACCCGTGTGGATGG  479

seq1  CCATATGAGACTCCAGGTGAGCCTTCTGCGTGAGAGACTTGTCCCACAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGAGACTCCAGGTGAGCCTTCTGCGTGAGAGACTTGTCCCACAAA  529

seq1  GTACACCTATAATTCTTCTGACCTGTATGAATGTTGAGGTGTGTCTATAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTATAATTCTTCTGACCTGTATGAATGTTGAGGTGTGTCTATAG  579

seq1  GTTGCTTGGATCACCAAAAGTCTTGCTACAAAAATCACACTTGTGGGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGGATCACCAAAAGTCTTGCTACAAAAATCACACTTGTGGGGGT  629

seq1  TCCCCCATATGACCCATTAAGTGCACGTGGGGTTTGGAAGGAGAGATGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATATGACCCATTAAGTGCACGTGGGGTTTGGAAGGAGAGATGAA  679

seq1  AGCCTGGGGGTATAGAGAACACTTCCTTTCCTTGCTGTGGCTTGGCCTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGGTATAGAGAACACTTCCTTTCCTTGCTGTGGCTTGGCCTGT  729

seq1  GGCTGCTGCTGTGGCCCTGGCTAGGGAGATGATTATGGATGTGGCTTGTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCTGTGGCCCTGGCTAGGGAGATGATTATGGATGTGGCTTGTC  779

seq1  AGATGAGCTGCGAACTCTGACTAGGAATTGTACTCCTTGCCACAGTTACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCTGCGAACTCTGACTAGGAATTGTACTCCTTGCCACAGTTACA  829

seq1  GAGGTACACATCTGGGTATTCAAGAACACTTACCTGTTGAGCATAATTCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACACATCTGGGTATTCAAGAACACTTACCTGTTGAGCATAATTCC  879

seq1  GGCTGTAATGGAAAAGCAGCTCACTTTCAGGAGGGATGTCTTGTGAGGTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAATGGAAAAGCAGCTCACTTTCAGGAGGGATGTCTTGTGAGGTA  929

seq1  CGAGGATAGATTTTTCCATCATGGGGCTAGGCCACCAAATTCTGTTCTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGATAGATTTTTCCATCATGGGGCTAGGCCACCAAATTCTGTTCTTC  979

seq1  ACGGTTCCTAGCTTTGCGTGCACGCACACACACACAAATCATCTAATTAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCCTAGCTTTGCGTGCACGCACACACACACAAATCATCTAATTAC  1029

seq1  ACACATTTTTATCAGTTGCAATGATGCAGAATTC  1179
      ||||||||||||||||||||||||||||||||||
seq2  ACACATTTTTATCAGTTGCAATGATGCAGAATTC  1063

seq1: chr14_70013666_70014731
seq2: B6Ng01-242I06.g_67_1152

seq1  GAATTCATTTATTCATTCTATTTTTTTTAATTTAGTTTCTTAGGAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTCATTCTATTTTTTTTAATTTAGTTTCTTAGGAATTAA  50

seq1  AAAGCATTACATCCTATGTATGTGTGTGCACATAGAGGCCACTGCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTACATCCTATGTATGTGTGTGCACATAGAGGCCACTGCATTAT  100

seq1  GTGTGGAAATCAGAGGACAATTTTCACAAGTCAGTTCTCTTCCACCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAAATCAGAGGACAATTTTCACAAGTCAGTTCTCTTCCACCAGAG  150

seq1  TGGGCTCTGCGGATTGACACTGGTCATTAAGCTTGTTGCTAGCAAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGCGGATTGACACTGGTCATTAAGCTTGTTGCTAGCAAGTGCT  200

seq1  TTCACCTGCTGAGTCATCTTGCTGGCCCCGTTTTCTCATGATTTTCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGCTGAGTCATCTTGCTGGCCCCGTTTTCTCATGATTTTCAAAA  250

seq1  AATGCATGTATCTGAGTCCATCCTTAGGAATGTGGTGTCTGTGAGACGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTATCTGAGTCCATCCTTAGGAATGTGGTGTCTGTGAGACGGA  300

seq1  TGTTTGGTCTTCTAGGGAGCTGCAAGTCCAGAGGCAGATGAATGTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTCTTCTAGGGAGCTGCAAGTCCAGAGGCAGATGAATGTGAAAG  350

seq1  CAGGTAGGAACTTGGCCAGAGCTTTGGGCACAGCAAGCTGATGTTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGAACTTGGCCAGAGCTTTGGGCACAGCAAGCTGATGTTAAAGA  400

seq1  GAGTGGAGGCTTGCTAAAGCTGACCCTTGTAGCAGGCTGTTCTTTGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGGCTTGCTAAAGCTGACCCTTGTAGCAGGCTGTTCTTTGAGAT  450

seq1  GTAGGAAGAATATTAGAACCAATCTTAGAAGGAGACTTGAGATTGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGAATATTAGAACCAATCTTAGAAGGAGACTTGAGATTGGCACT  500

seq1  AGTGTTGATTGGTGACAGTAGTAACTGAGAAAGTCTATCCTGAGCAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGATTGGTGACAGTAGTAACTGAGAAAGTCTATCCTGAGCAGTAC  550

seq1  ACAGGAGAACTGTGAGGCCTCTGGGTACATGCCACCGCCCTGCAGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAACTGTGAGGCCTCTGGGTACATGCCACCGCCCTGCAGATGCC  600

seq1  ATTATCTTGAGTGAGCACTGGAGACTTGGTACCAGCTGGCTTTGTGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGAGTGAGCACTGGAGACTTGGTACCAGCTGGCTTTGTGCAGC  650

seq1  CGAGCCCAGCCAGCTTCGCTGATGTGGCAGTTGGTGCCTGTTTCTAACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCCAGCCAGCTTCGCTGATGTGGCAGTTGGTGCCTGTTTCTAACGC  700

seq1  TCTCTGGGCTCTCTGGTGGGAGCCAAGGCTGCCACGGGCAGCACAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTCTCTGGTGGGAGCCAAGGCTGCCACGGGCAGCACAGTCCC  750

seq1  AGCTCTGAGGCTTTTAAACACTTTCAGTACAGCACTCTGACTCTGGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGAGGCTTTTAAACACTTTCAGTACAGCACTCTGACTCTGGGACA  800

seq1  GCCAAGTGCTTCCAGCTGACTATGGCCTCTGC-TTGTCA-CCGGTCCCTC  848
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  GCCAAGTGCTTCCAGCTGACTATGGCCTCTGCTTTGTCACCCGGTCCCTC  850

seq1  TCTGGGTTTTACTCTCATGAAAAGAGCACAAGGTTGAAATGATGGACTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTTACTCTCATGAAAAGAGCACAAGGTTGAAATGATGGACTGT  900

seq1  TGAACCAAGTTGTT--CCTCTCAGACCC--TCACTTGG-TCTCCAGC-TT  942
      |||||| |||||||  ||||||||||||   ||||||| |||||||| ||
seq2  TGAACCCAGTTGTTTCCCTCTCAGACCCCTCCACTTGGTTCTCCAGCTTT  950

seq1  CT-GGAG-ATG-CCCAGTG-AGCATGAAGGG-CTGAGCCTCCCTTTG-AT  986
      || |||| ||| ||||||| ||||||||||| ||||||||||||||| ||
seq2  CTGGGAGAATGCCCCAGTGAAGCATGAAGGGCCTGAGCCTCCCTTTGAAT  1000

seq1  GG-TCAAG-CCTTATCTTAGATAAA-GAGTCTGGGGAC-TCTGAATGACT  1032
      || ||||| |||||||||||||||| ||||||||| || |||| ||||| 
seq2  GGTTCAAGCCCTTATCTTAGATAAAGGAGTCTGGGAACTTCTGGATGACC  1050

seq1  TGTG-TACTCCTC-TCACTTTGACTCCCACCATCTC  1066
      |||| |||||||| |||||||||||||||| |||||
seq2  TGTGTTACTCCTCTTCACTTTGACTCCCACAATCTC  1086