BAC Information

Click to search

BAC

Clone NameB6Ng01-242K17
Chromosome14 (Build37)
Map Location 25,647,539 - 25,751,884
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K17.bB6Ng01-242K17.g
ACCGA052253GA052254
length1,052933
definitionB6Ng01-242K17.b B6Ng01-242K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,647,539 - 25,648,592)(25,751,109 - 25,751,884)
sequence
gaattcagcattcccaggcttgctggagtatttggataggaccccttcct
tccctgtttcttctccaaagaagtggtggtgttaagtagatgtgccagtg
ataagtttggcacattttgtcacacaatcaatttttttttaaaccagagg
cgcttaggcaattgtgagataaataaatggctcttagggttgccaatctt
gtttgtgacaactcagaaccttgccccaagagagtcatccttccagaatg
acgacaaaggagagctcttctccacagcatggaatgcaaaggggggtgtg
tggtctcactgagtctcaaaaaactgtcttttggggacagggtatgcagg
tacttttggatccctgtccgtgtcacctctaggggacatgggaacaccac
agggctgtagttagaggtcatggaggcagactgtgataactaaattattc
ggaggggggtgctgagtgggggagtagacaatgttgattctactgcttag
cacctagtactacctaatgagctcagattcaacacaggggtggactaggg
ggggtgagtcaaggagacataggcagccacctgggtgccggatctgtgat
tcataagctaaactgacccttaattagctaatcattgtaactcaaggaag
gaaactcctcctcaaggacagggactctgcaatatctcgtccaccccttc
agggagtaaagagtagagacagcccaattccaccggcccaggaatatgga
ggggagccggttagtctacagtgctgcgaggctatgccagtgacatgata
acctcagtgacatgcaggagctctgtgcatccagattcctcccgcttttc
cctttcttgggctggttatggctactctgaagacttgggtctcacttttt
tgtgtgtatggagacgggggtcttgcataatagactaggctagttgaatt
catggtactctctgccttagcatctctggtgtgaatgctaggatcaagac
atgaacaatggcactggctggggctcaatctttctgggagcctaacctct
gg
gaattctgaataaatgaacttatctaagtaaccttcttgcatttaagcag
caatctttttgtttgctctcgctgcatgaacacactcgtctagctttgtg
gacctaattcccccacaagattccctcatctgtttggccatgagagaccc
agttctaggtctactgtgtgggtcagtcaattgagaattatccaaaggaa
tcaaaaagggttttgatcaaaatttaaataaaatgagtaagactcagatt
taaatatacatgttatgaaagaagacagatcaggaataaccaacccaagc
ttttattttataaaagtataagaaaaaaattacaagcttaactcaaagca
acaggaagaaagataataaacattagaaaagaaatcaataaaataaatcg
agaaaattataaaaacccacaaacacaaaagctggctctttgaaagcaat
caataataggaatacatatacagtctagtaaatcaagtgggaaaaaagag
gaagagagagaactcacaaattaccaatgccagaaacaaaagagggccaa
tcactactcatttcttagacatccaatatatctatgaaaaagggaaaaaa
tgattgctaaaaaactctgtacctatgagtttaataatttacctaaaatt
agcaaaaaataaatgaaatttatatacagagaaaaatatctcctcacata
taaataaatatattaaaatatatgaataatatatatgtatatatagtata
gatataatattatttttcacatatattcacacacacatacacacacacac
acacacacatatatatatatacatatatatatatatatatatatatatat
atatatatgaaaaataaaatatttttaatgtccctaaaggagcaacccac
actccaatgggttccgactgatacatttccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25647539_25648592
seq2: B6Ng01-242K17.b_49_1100

seq1  GAATTCAGCATTCCCAGGCTTGCTGGAGTATTTGGATAGGACCCCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTCCCAGGCTTGCTGGAGTATTTGGATAGGACCCCTTCCT  50

seq1  TCCCTGTTTCTTCTCCAAAGAAGTGGTGGTGTTAAGTAGATGTGCCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTCTTCTCCAAAGAAGTGGTGGTGTTAAGTAGATGTGCCAGTG  100

seq1  ATAAGTTTGGCACATTTTGTCACACAATCAATTTTTTTTTAAACCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGGCACATTTTGTCACACAATCAATTTTTTTTTAAACCAGAGG  150

seq1  CGCTTAGGCAATTGTGAGATAAATAAATGGCTCTTAGGGTTGCCAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAGGCAATTGTGAGATAAATAAATGGCTCTTAGGGTTGCCAATCTT  200

seq1  GTTTGTGACAACTCAGAACCTTGCCCCAAGAGAGTCATCCTTCCAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGACAACTCAGAACCTTGCCCCAAGAGAGTCATCCTTCCAGAATG  250

seq1  ACGACAAAGGAGAGCTCTTCTCCACAGCATGGAATGCAAAGGGGGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAAAGGAGAGCTCTTCTCCACAGCATGGAATGCAAAGGGGGGTGTG  300

seq1  TGGTCTCACTGAGTCTCAAAAAACTGTCTTTTGGGGACAGGGTATGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCACTGAGTCTCAAAAAACTGTCTTTTGGGGACAGGGTATGCAGG  350

seq1  TACTTTTGGATCCCTGTCCGTGTCACCTCTAGGGGACATGGGAACACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGGATCCCTGTCCGTGTCACCTCTAGGGGACATGGGAACACCAC  400

seq1  AGGGCTGTAGTTAGAGGTCATGGAGGCAGACTGTGATAACTAAATTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTAGTTAGAGGTCATGGAGGCAGACTGTGATAACTAAATTATTC  450

seq1  GGAGGGGGGTGCTGAGTGGGGGAGTAGACAATGTTGATTCTACTGCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGTGCTGAGTGGGGGAGTAGACAATGTTGATTCTACTGCTTAG  500

seq1  CACCTAGTACTACCTAATGAGCTCAGATTCAACACAGGGGTGGACTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGTACTACCTAATGAGCTCAGATTCAACACAGGGGTGGACTAGGG  550

seq1  GGGGTGAGTCAAGGAGACATAGGCAGCCACCTGGGTGCCGGATCTGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGTCAAGGAGACATAGGCAGCCACCTGGGTGCCGGATCTGTGAT  600

seq1  TCATAAGCTAAACTGACCCTTAATTAGCTAATCATTGTAACTCAAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGCTAAACTGACCCTTAATTAGCTAATCATTGTAACTCAAGGAAG  650

seq1  GAAACTCCTCCTCAAGGACAGGGACTCTGCAATATCTCGTCCACCCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCTCCTCAAGGACAGGGACTCTGCAATATCTCGTCCACCCCTTC  700

seq1  AGGGAGTAAAGAGTAGAGACAGCCCAATTCCACCGGCCCAGGAATATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTAAAGAGTAGAGACAGCCCAATTCCACCGGCCCAGGAATATGGA  750

seq1  GGGGAGCCGGTTAGTCTACAGTGCTGCGAGGCTATGCCAGTGACATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCCGGTTAGTCTACAGTGCTGCGAGGCTATGCCAGTGACATGATA  800

seq1  ACCTCAGTGACATGCAGGAGCTCTGTGCATCCAGATTCCTCCCGCTTT--  848
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  ACCTCAGTGACATGCAGGAGCTCTGTGCATCCAGATTCCTCCCGCTTTTC  850

seq1  CCCTTCTTGGGCTGG-TATGGC-ACTCTGAAGACTTGGGTCTCACTTTTT  896
      || |||||||||||| |||||| |||||||||||||||||||||||||||
seq2  CCTTTCTTGGGCTGGTTATGGCTACTCTGAAGACTTGGGTCTCACTTTTT  900

seq1  TGTGTGTATGGAGACGGGGGTCTTGCCATATAGACTAGGCTAGTTGTAAT  946
      ||||||||||||||||||||||||||   ||||||||||||||||| |||
seq2  TGTGTGTATGGAGACGGGGGTCTTGCATAATAGACTAGGCTAGTTG-AAT  949

seq1  TCATGGCACTCCTTCTGCCCTAGCATCTCTGGTGTGAGTGCTAGGATCAA  996
      |||||| ||||  |||||| ||||||||||||||||| |||||||||| |
seq2  TCATGGTACTC--TCTGCCTTAGCATCTCTGGTGTGAATGCTAGGATC-A  996

seq1  AGACATGAGCCAATGCACTGGGCTTGGGTCTCATCCTTTCTGGGAGCCTA  1046
      |||||||| | |  |||||||   |||| ||||  |||||||||||||||
seq2  AGACATGAACAATGGCACTGG--CTGGGGCTCAATCTTTCTGGGAGCCTA  1044

seq1  ACATCTGG  1054
      || |||||
seq2  ACCTCTGG  1052

seq1: chr14_25751109_25751884
seq2: B6Ng01-242K17.g_70_846 (reverse)

seq1  AATATATGTG-AAAATAATATTATATCTATACTATATATACATATATATT  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTGAAAAATAATATTATATCTATACTATATATACATATATATT  50

seq1  ATTCATATATTTTAATATATTTATTTATATGTGAGGAGATATTTTTCTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATTTTAATATATTTATTTATATGTGAGGAGATATTTTTCTCT  100

seq1  GTATATAAATTTCATTTATTTTTTGCTAATTTTAGGTAAATTATTAAACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAATTTCATTTATTTTTTGCTAATTTTAGGTAAATTATTAAACT  150

seq1  CATAGGTACAGAGTTTTTTAGCAATCATTTTTTCCCTTTTTCATAGATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTACAGAGTTTTTTAGCAATCATTTTTTCCCTTTTTCATAGATAT  200

seq1  ATTGGATGTCTAAGAAATGAGTAGTGATTGGCCCTCTTTTGTTTCTGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGTCTAAGAAATGAGTAGTGATTGGCCCTCTTTTGTTTCTGGCA  250

seq1  TTGGTAATTTGTGAGTTCTCTCTCTTCCTCTTTTTTCCCACTTGATTTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTTGTGAGTTCTCTCTCTTCCTCTTTTTTCCCACTTGATTTAC  300

seq1  TAGACTGTATATGTATTCCTATTATTGATTGCTTTCAAAGAGCCAGCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTATATGTATTCCTATTATTGATTGCTTTCAAAGAGCCAGCTTT  350

seq1  TGTGTTTGTGGGTTTTTATAATTTTCTCGATTTATTTTATTGATTTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGGGTTTTTATAATTTTCTCGATTTATTTTATTGATTTCTTT  400

seq1  TCTAATGTTTATTATCTTTCTTCCTGTTGCTTTGAGTTAAGCTTGTAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTTTATTATCTTTCTTCCTGTTGCTTTGAGTTAAGCTTGTAATT  450

seq1  TTTTTCTTATACTTTTATAAAATAAAAGCTTGGGTTGGTTATTCCTGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATACTTTTATAAAATAAAAGCTTGGGTTGGTTATTCCTGATC  500

seq1  TGTCTTCTTTCATAACATGTATATTTAAATCTGAGTCTTACTCATTTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTTCATAACATGTATATTTAAATCTGAGTCTTACTCATTTTAT  550

seq1  TTAAATTTTGATCAAAACCCTTTTTGATTCCTTTGGATAATTCTCAATTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTGATCAAAACCCTTTTTGATTCCTTTGGATAATTCTCAATTG  600

seq1  ACTGACCCACACAGTAGACCTAGAACTGGGTCTCTCATGGCCAAACAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCACACAGTAGACCTAGAACTGGGTCTCTCATGGCCAAACAGAT  650

seq1  GAGGGAATCTTGTGGGGGAATTAGGTCCACAAAGCTAGACGAGTGTGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATCTTGTGGGGGAATTAGGTCCACAAAGCTAGACGAGTGTGTTC  700

seq1  ATGCAGCGAGAGCAAACAAAAAGATTGCTGCTTAAATGCAAGAAGGTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCGAGAGCAAACAAAAAGATTGCTGCTTAAATGCAAGAAGGTTAC  750

seq1  TTAGATAAGTTCATTTATTCAGAATTC  776
      |||||||||||||||||||||||||||
seq2  TTAGATAAGTTCATTTATTCAGAATTC  777