BAC Information

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BAC

Clone NameB6Ng01-243H19
Chromosome14 (Build37)
Map Location 52,772,332 - 52,884,923
singlet/doubletdoublet
Overlap geneRpgrip1, Supt16h, Chd8, Rab2b
Upstream geneEar5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
Downstream geneTox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243H19.bB6Ng01-243H19.g
ACCGA052858GA052859
length1,124777
definitionB6Ng01-243H19.b B6Ng01-243H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,883,799 - 52,884,923)(52,772,332 - 52,773,106)
sequence
gaattctctgtattactcccttctactgtttattaattattctcaggttt
tatttagtcagtttgagatagagtgtttctgggtagccctggctggtctg
gaattcactgtgtagaccagactagcctcaggcctgtgatctccttacct
ctgcctcctcagtgttgaggtcacaggattgggactaccacatccagatt
cttaattcaccttaggaatccaattaaaaatatttgtattttggactggc
gagatggctcagcaggtaagagcactgactgctcttctgtggtcctgagt
tcaactcccagcaaccacatggtggctcacaaccaactgtaatgaaatct
gatgccttcttctggtgtgtctgtagacagcaacagtcaacagtgtattt
aatctatagtaataaatctttaaaaaaaatatcatctctctatgtaattt
aaggctgataaaagatttctgtctcctccaggcctacattaatacagcca
aagaaatatataggaagatccagcaaggtttatttgatgtccacaatgag
gtgagaaaagtttggggttagaaccggcagctatcttgatagatgctctc
tagaatgtcagcgttcctgcctgatgtcacactgatcacaggtggttttt
aggtgcaggtatctaagaccccacattacattctgtttactctcagtctg
aaccccatacatattgttgagagagatatgccagtgatttacagacgtac
ataatatgagcgtttttctccttgacctcagttttttactattggagaga
gagagaggatttttcatttcttaggagggaaaattctgagacaaaacaaa
gaatcatatgctaatttgtttgccacttctactcttttgctttgcttact
cttttaaaaaaagaattttttttcttatgtatatttgtatgtgatgagca
tgtatatatatgcatgtttacatatgtgttggggaaaatgtgggttgttc
atctggaggcacagtgtcttttcattgctgttcaccttacacactgaggc
agtttgctctggggactcccttgtatcttgcttctaggactgggatgtaa
ggtggctgctatgcccgtcctggc
gaattctttgtgggatagctgagaggaatgtcttagtttctgcagttttt
ttttgacctcccacccctcctctctctgttttgacaggttctctgttgtg
gtttgaatacgcatggcccgcataggctcttatatttgaatgcttggtta
ccagggagtgtaactgtttgaaaggatttcaaggattaggaagtgtggcc
ttgttggaggaagtgtgtcctgggtgtaaactcttgagatgtctaaagcc
catgccaggccttgttgtttgtttgtcgtctgactgtctgtatgtctgtc
tttgcttgtggatcaggatgtagctctcagctacttctccagcacaatgt
ggctgccacactatctgatggagtggtagagtgtacaatactgccatgtt
ctgccattatgttaatagactagtcctctgaaacggtcagcaagcgtgca
gttacattaagtgcgctctcttataagagttgccaggttggcgagatggc
tcggcgggtaagagcactgactgctcttctgaaggtcctgtgttcaaatc
ccagcaaccacatggtggctcacaaacatccataatgagatctgacgccc
tcttttagtgcatctgaagacagctacagtgtatttaggcataataataa
atacatctttgggccagagagaacagaggtcctaaaatcagttcccaata
accacatgaagactcataaatctattgtcctcattttccaaatctaaaaa
aaaaaagaaaaagagttgccttaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52883799_52884923
seq2: B6Ng01-243H19.b_43_1166 (reverse)

seq1  GCCA-GACGGGCATAGCAGCTCACCTACAATCCCAGTCCTTAGAAGCAAA  49
      |||| ||||||||||||||| |||||   |||||||||| ||||||| ||
seq2  GCCAGGACGGGCATAGCAGC-CACCTTACATCCCAGTCC-TAGAAGC-AA  47

seq1  GATAC-AGGGAGTCCCCAGAGCAAACCTGCCTCAGTGTGTAAGGTGAACA  98
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATACAAGGGAGTCCCCAGAGCAAA-CTGCCTCAGTGTGTAAGGTGAACA  96

seq1  GCAATGAAAAGACACCTGTTGCCTCCAGATGAAC-ACCCACATTTTTCCC  147
      |||||||||||||| ||| ||||||||||||||| ||||||||||| |||
seq2  GCAATGAAAAGACA-CTG-TGCCTCCAGATGAACAACCCACATTTTCCCC  144

seq1  AACACATATGTAAACATGCATATATATACATGCTCATCACATAC-AATAT  196
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACACATATGTAAACATGCATATATATACATGCTCATCACATACAAATAT  194

seq1  ACATAAG-AAAAAAATTCTTTTTTTAAAAGAGTAAGCAAAGCAAAAGAGT  245
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAAAAAAAATTCTTTTTTTAAAAGAGTAAGCAAAGCAAAAGAGT  244

seq1  AGAAGTGGCAAACAAATTAGCATATGATTCTTTGTTTTGTCTCAGAATTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGCAAACAAATTAGCATATGATTCTTTGTTTTGTCTCAGAATTT  294

seq1  TCCCTCCTAAGAAATGAAAAATCCTCTCTCTCTCTCCAATAGTAAAAAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTAAGAAATGAAAAATCCTCTCTCTCTCTCCAATAGTAAAAAAC  344

seq1  TGAGGTCAAGGAGAAAAACGCTCATATTATGTACGTCTGTAAATCACTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAAGGAGAAAAACGCTCATATTATGTACGTCTGTAAATCACTGG  394

seq1  CATATCTCTCTCAACAATATGTATGGGGTTCAGACTGAGAGTAAACAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCTCTCAACAATATGTATGGGGTTCAGACTGAGAGTAAACAGAA  444

seq1  TGTAATGTGGGGTCTTAGATACCTGCACCTAAAAACCACCTGTGATCAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTGGGGTCTTAGATACCTGCACCTAAAAACCACCTGTGATCAGT  494

seq1  GTGACATCAGGCAGGAACGCTGACATTCTAGAGAGCATCTATCAAGATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAGGCAGGAACGCTGACATTCTAGAGAGCATCTATCAAGATAG  544

seq1  CTGCCGGTTCTAACCCCAAACTTTTCTCACCTCATTGTGGACATCAAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGTTCTAACCCCAAACTTTTCTCACCTCATTGTGGACATCAAATA  594

seq1  AACCTTGCTGGATCTTCCTATATATTTCTTTGGCTGTATTAATGTAGGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTGGATCTTCCTATATATTTCTTTGGCTGTATTAATGTAGGCC  644

seq1  TGGAGGAGACAGAAATCTTTTATCAGCCTTAAATTACATAGAGAGATGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGACAGAAATCTTTTATCAGCCTTAAATTACATAGAGAGATGAT  694

seq1  ATTTTTTTTAAAGATTTATTACTATAGATTAAATACACTGTTGACTGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAAAGATTTATTACTATAGATTAAATACACTGTTGACTGTTG  744

seq1  CTGTCTACAGACACACCAGAAGAAGGCATCAGATTTCATTACAGTTGGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACAGACACACCAGAAGAAGGCATCAGATTTCATTACAGTTGGTT  794

seq1  GTGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAGGACCACAGAAGAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTGGTTGCTGGGAGTTGAACTCAGGACCACAGAAGAGC  844

seq1  AGTCAGTGCTCTTACCTGCTGAGCCATCTCGCCAGTCCAAAATACAAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTTACCTGCTGAGCCATCTCGCCAGTCCAAAATACAAATA  894

seq1  TTTTTAATTGGATTCCTAAGGTGAATTAAGAATCTGGATGTGGTAGTCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTGGATTCCTAAGGTGAATTAAGAATCTGGATGTGGTAGTCCC  944

seq1  AATCCTGTGACCTCAACACTGAGGAGGCAGAGGTAAGGAGATCACAGGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGTGACCTCAACACTGAGGAGGCAGAGGTAAGGAGATCACAGGCC  994

seq1  TGAGGCTAGTCTGGTCTACACAGTGAATTCCAGACCAGCCAGGGCTACCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAGTCTGGTCTACACAGTGAATTCCAGACCAGCCAGGGCTACCC  1044

seq1  AGAAACACTCTATCTCAAACTGACTAAATAAAACCTGAGAATAATTAATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTCTATCTCAAACTGACTAAATAAAACCTGAGAATAATTAATA  1094

seq1  AACAGTAGAAGGGAGTAATACAGAGAATTC  1125
      ||||||||||||||||||||||||||||||
seq2  AACAGTAGAAGGGAGTAATACAGAGAATTC  1124

seq1: chr14_52772332_52773106
seq2: B6Ng01-243H19.g_64_840

seq1  GAATTCTTTGTGGGATAGCTGAGAGGAATGTCTTAGTTTCTGCAGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGGATAGCTGAGAGGAATGTCTTAGTTTCTGCAGTTTTT  50

seq1  TTTTGACCTCCCACCCCTCCTCTCTCTGTTTTGACAGGTTCTCTGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCTCCCACCCCTCCTCTCTCTGTTTTGACAGGTTCTCTGTTGTG  100

seq1  GTTTGAATACGCATGGCCCGCATAGGCTCTTATATTTGAATGCTTGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATACGCATGGCCCGCATAGGCTCTTATATTTGAATGCTTGGTTA  150

seq1  CCAGGGAGTGTAACTGTTTGAAAGGATTTCAAGGATTAGGAAGTGTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGTGTAACTGTTTGAAAGGATTTCAAGGATTAGGAAGTGTGGCC  200

seq1  TTGTTGGAGGAAGTGTGTCCTGGGTGTAAACTCTTGAGATGTCTAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAGGAAGTGTGTCCTGGGTGTAAACTCTTGAGATGTCTAAAGCC  250

seq1  CATGCCAGGCCTTGTTGTTTGTTTGTCGTCTGACTGTCTGTATGTCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGGCCTTGTTGTTTGTTTGTCGTCTGACTGTCTGTATGTCTGTC  300

seq1  TTTGCTTGTGGATCAGGATGTAGCTCTCAGCTACTTCTCCAGCACAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGTGGATCAGGATGTAGCTCTCAGCTACTTCTCCAGCACAATGT  350

seq1  GGCTGCCACACTATCTGATGGAGTGGTAGAGTGTACAATACTGCCATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCACACTATCTGATGGAGTGGTAGAGTGTACAATACTGCCATGTT  400

seq1  CTGCCATTATGTTAATAGACTAGTCCTCTGAAACGGTCAGCAAGCGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTATGTTAATAGACTAGTCCTCTGAAACGGTCAGCAAGCGTGCA  450

seq1  GTTACATTAAGTGCGCTCTCTTATAAGAGTTGCCAGGTTGGCGAGATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTAAGTGCGCTCTCTTATAAGAGTTGCCAGGTTGGCGAGATGGC  500

seq1  TCGGCGGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGTGTTCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCGGGTAAGAGCACTGACTGCTCTTCTGAAGGTCCTGTGTTCAAATC  550

seq1  CCAGCAACCACATGGTGGCTCACAAACATCCATAATGAGATCTGACGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATGGTGGCTCACAAACATCCATAATGAGATCTGACGCCC  600

seq1  TCTTCTAGTGCATCTGAAGACAGCTACAGTGTATTTAGGCATAATAATAA  650
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTGCATCTGAAGACAGCTACAGTGTATTTAGGCATAATAATAA  650

seq1  ATACATCTTTGGGCCAGAGTGAACAGAGGTCCTAAAATCAGTTCCCAACA  700
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  ATACATCTTTGGGCCAGAGAGAACAGAGGTCCTAAAATCAGTTCCCAATA  700

seq1  ACCACATGAAGACTCAT-AATCCATTGTCCTCATTTGCGAAATCT-AAAA  748
      ||||||||||||||||| |||| ||||||||||||| | |||||| ||||
seq2  ACCACATGAAGACTCATAAATCTATTGTCCTCATTTTCCAAATCTAAAAA  750

seq1  AAAAAAGAAAAAGAGTTGCCTTAAGAC  775
      |||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAGAGTTGCCTTAAGAC  777