BAC Information

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BAC

Clone NameB6Ng01-243I11
Chromosome14 (Build37)
Map Location 49,343,707 - 49,344,705
singlet/doubletsinglet
Overlap geneLOC100041864
Upstream geneKtn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2
Downstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243I11.bB6Ng01-243I11.g
ACCGA052888GA052889
length1,2381,013
definitionB6Ng01-243I11.b B6Ng01-243I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaacctaggtagcctgcctctggagttcacactctttattggtc
tcactggtgttggaaagcctgctcttggcttccttctaaaagtcgttgtc
cacatcttacatgtttaaagaaatcactaaaaaatccagcttaaacaagt
agctactggtggatgtgtttgggtgtaattggatggtagaggacttgttt
tccatgtacaaggtccaggacatcactcagaaaaaagaaaaagaaaaaca
cagcaagaaaaatgttcttatagagtagagcaaataaatcaacaagtgaa
tatataatatgcaggataatgacaaatgctatgaagaaaagtgaagtata
gcaagaaacaaagattgataggcagatagatagtgcagcaggagggaaaa
ggacactgtcaacattgaggctggacagatggctcagtggttaagaacac
ttaatgtacttgcagagaacccaggtttagttcctagcacccacactggg
cagttaacaactgcctgtaactctagttccagggaatccagtgccatctt
atgtgttctcaggtacctgcatgcccagaacacacataatctcatagaca
cacatatatgtaaaagtaacttttattttcctgtagtaattgttgtctcc
aagactgcctttgtctgctaacctaggcctagtcctggaaacttctagcc
tcaatacaatcttacggaggcttagaatgttttcagcctctgacacttac
tgctcagtaagttcaccctttttagttctctctgaattttggctggctgg
tcctactcagcagttctggctcaaattcctctctatgctgacagattcaa
atctggcttctctctcagcttctcactgaatttctttgcttggcttcaaa
ctaactctagcaatctgtttctaatcttctggctctttcttcattctcta
gctcattctgtcttcacctgtgtctaagctttgctctctctctcccactt
ccctcttctccccttccctcccacctctcattctctctcttctccccctg
tccttcaagtaagctttcccttttccatttctccttcttcatgtaaggtt
taaagcctatatcctatttcttgtcaattctttctctttgattttggtta
cactttttgttctggccacctcaaacattacacttatcaaagcaatgggg
ttgcatgttctcgttctctgcaacaacgcgtacagact
gaattccatttctctggaagaacaacaatcactgttagacacagacaaac
aagtgaagaaaaggctttctggatggctcaaaggctaatgtagcttattt
ccaagcttgatggcccgtgtttcagtccagaactcacaaatggagtgagt
gtgggagcaggctattgagaccccatggcttggtgttttgaccttagtag
gggtgacaaggaaatgaggaaagagcagacatgtacacacagaagctggg
gtcaggtgaaatgtacacacactgatgaagcacttaccaactatacagca
acctggaacctcggtggtttcatacgcacagcacagtgggaagggagaac
tggtgtctcagcaaacagtctcagactgcatgcatttgggagtaggcagc
tatagttggtagtgtgtgagtgtacgtgtgcgcgcgtgcacacacacaca
cacatacacatacacgcgtgcgcacatgcacacaattgtttgtaaacagt
ctgtacttgcacacactgtcaacattcattcacaccctaagcagaggaag
gctttgcatccctctgagcctcatcccacgaggaaatctttgttattccc
atgtacttgaggctttggtccttaacaaggcaatgtacaagtcaaacaat
attccttcacttagctcttcctctgcttcctgatggtgggctctcaagta
acacacacacacacacacacacacacacacacacacacacacacacacac
acacacacacacatacacagctttttaaaaaagcttttatagtcaggtgg
tggtggctgcgcatgccttttatcttagtactagggaggcagaggcaaat
ggatatctgtgagctctgggccagcctggtctacaaagtgagttcccagg
aaaccccaggttacatagtgaaacctctgtcttggaaggaaaaaagcaat
atgtctaagtatcattatggcatgtatgtaaagcagaacttgtgttcaac
ataatggtgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49343707_49344705
seq2: B6Ng01-243I11.g_66_1078

seq1  GAATTCCATTTCTCTGGAAGAACAACAATCACTGTTAGACACAGACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCTCTGGAAGAACAACAATCACTGTTAGACACAGACAAAC  50

seq1  AAGTGAAGAAAAGGCTTTCTGGATGGCTCAAAGGCTAATGTAGCTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGAAAAGGCTTTCTGGATGGCTCAAAGGCTAATGTAGCTTATTT  100

seq1  CCAAGCTTGATGGCCCGTGTTTCAGTCCAGAACTCACAAATGGAGTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTGATGGCCCGTGTTTCAGTCCAGAACTCACAAATGGAGTGAGT  150

seq1  GTGGGAGCAGGCTATTGAGACCCCATGGCTTGGTGTTTTGACCTTAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCAGGCTATTGAGACCCCATGGCTTGGTGTTTTGACCTTAGTAG  200

seq1  GGGTGACAAGGAAATGAGGAAAGAGCAGACATGTACACACAGAAGCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACAAGGAAATGAGGAAAGAGCAGACATGTACACACAGAAGCTGGG  250

seq1  GTCAGGTGAAATGTACACACACTGATGAAGCACTTACCAACTATACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGAAATGTACACACACTGATGAAGCACTTACCAACTATACAGCA  300

seq1  ACCTGGAACCTCGGTGGTTTCATACGCACAGCACAGTGGGAAGGGAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAACCTCGGTGGTTTCATACGCACAGCACAGTGGGAAGGGAGAAC  350

seq1  TGGTGTCTCAGCAAACAGTCTCAGACTGCATGCATTTGGGAGTAGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCAGCAAACAGTCTCAGACTGCATGCATTTGGGAGTAGGCAGC  400

seq1  TATAGTTGGTAGTGTGTGAGTGTACGTGTGCGCGCGTGCACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGGTAGTGTGTGAGTGTACGTGTGCGCGCGTGCACACACACACA  450

seq1  CACATACACATACACGCGTGCGCACATGCACACAATTGTTTGTAAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACATACACGCGTGCGCACATGCACACAATTGTTTGTAAACAGT  500

seq1  CTGTACTTGCACACACTGTCAACATTCATTCACACCCTAAGCAGAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTGCACACACTGTCAACATTCATTCACACCCTAAGCAGAGGAAG  550

seq1  GCTTTGCATCCCTCTGAGCCTCATCCCACGAGGAAATCTTTGTTATTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATCCCTCTGAGCCTCATCCCACGAGGAAATCTTTGTTATTCCC  600

seq1  ATGTACTTGAGGCTTTGGTCCTTAACAAGGCAATGTACAAGTCAAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGAGGCTTTGGTCCTTAACAAGGCAATGTACAAGTCAAACAAT  650

seq1  ATTCCTTCACTTAGCTCTTCCTCTGCTTCCTGATGGTGGGCTCTCAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCACTTAGCTCTTCCTCTGCTTCCTGATGGTGGGCTCTCAAGTA  700

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  750

seq1  ACACACACACACATACACAGCTTTTTAAAAAAGCTTTTATAGTCAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATACACAGCTTTTTAAAAAAGCTTTTATAGTCAGGTGG  800

seq1  TGGTGGCTGCGCATGCCTTTTATCTTAGTACTAGGGAGGCAGAGGCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTGCGCATGCCTTTTATCTTAGTACTAGGGAGGCAGAGGCAAAT  850

seq1  GGATATCTGTGAGCTCTGGGCCAGCCTGGTCTACAAAGTGAGTT-CCAGG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGATATCTGTGAGCTCTGGGCCAGCCTGGTCTACAAAGTGAGTTCCCAGG  900

seq1  AAA-CCCAGGTTACATAGTGAAACC-CTGTCTTGGA--GGAAAAAGC-AT  944
      ||| ||||||||||||||||||||| ||||||||||  | ||||||| ||
seq2  AAACCCCAGGTTACATAGTGAAACCTCTGTCTTGGAAGGAAAAAAGCAAT  950

seq1  ATGTCTAAGTA-CA-TAT-GCATGTATGTAAAGCAGA--CTGTG-TCAAC  988
      ||||||||||| || ||| ||||||||||||||||||   |||| |||||
seq2  ATGTCTAAGTATCATTATGGCATGTATGTAAAGCAGAACTTGTGTTCAAC  1000

seq1  ATA--TGTGACTT  999
      |||   |||||||
seq2  ATAATGGTGACTT  1013