BAC Information

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BAC

Clone NameB6Ng01-244C08
Chromosome14 (Build37)
Map Location 105,297,294 - 105,484,605
singlet/doubletdoublet
Overlap geneLOC435420
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneRbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244C08.bB6Ng01-244C08.g
ACCGA053352GA053353
length9531,132
definitionB6Ng01-244C08.b B6Ng01-244C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,297,294 - 105,298,031)(105,483,491 - 105,484,605)
sequence
gcccatgctagacagtgagactctgcctcagcacacacgaatacaaacac
acgtgcgcgtgcacacatgcacacacacacacacacacagatgcacatat
acacatatgcatgtatctgcacaaatacagcaatttttaaaaaccccaaa
tatttaaaacttgcaatgaaagtaagcagaaccatgtgtttaattggtca
tgttttatcccaggtaataggactaaaatgagtatgtacctttaaaggct
agcataacttcataccagagccatcaatgctgcagaaaaagatagctaca
gtctaatctcaaatgatcattggtgcaaacaatacaccaatgtgcagcac
ttgggattgtgcatcatgaacaggtgggatttgttttccacacacaggct
gctttaaataaacagtgcaatcaacataacacattgtaacagcaattgaa
gactaaagtcatgtgatcatctcagtcactttagacaaagcatttcacaa
aaactcttgactgtttaggaacagatgaaattttcttaacacaataacaa
agagttggctttttaaaaaaaataaacaaaattaaccaaccctagctaaa
ttaaccaataataattttaaaaaaagacacaaaataaaaaatggaagagg
atatattaaaacacactcctcagaaatgaaaacataattaaaagactatt
ctgaataattacatgggaaaataacttagaagaaatacataaactcatag
aaaaaaattacctacaaagattgaatcaaaatacatacaaggtatgggaa
aacttataactactacactacaacccatagggaacaactcaaacttttag
cactaaaacatggaacaaagcaaggaatgcccactcttgccatttcttat
acataactttgggaagtacaagcctttaaaaaaaaaaaagtcaagagaaa
gcg

gaattctgataatattcatttggtacaatttatatttttcttttatcttt
ttatttcttgacagtttaggctggggcataaagcataattatattcttag
catcctcccttagaagttttaaatcagttcatgaggctttcggggaggct
gctgccatttatccatcagcatccagtccatttaatccggactctcagcc
cagcagccctagcccctgttgtgagtgattggcccgctccagcgctccca
gcttctcctgtcacatcgcatttgcataaaagaggacagataaccaaatt
tgagcacacaaatgaaaatgctaagcgctaaagctgtcacagttgttgtt
caactaattgtgaaaaatttgatttcctcgccattcactgtttgtcatgt
ggacccccttctcaaatgcaccttggctccagcctctgcctgtgtagttt
tgaactctcaagtgcaagcagcccaccctgggggttacttacctctccta
ccggcttttaatgttggctcatcttctggactaaattaggtcaccatggc
aaacaaacacataattaaaagaggaagaaagacaagtgcacttacacttc
ttaaatctatttccataatgccagtgaatgcctccatgggcttctatttc
acaaggttatttctttatataacctttcggtaggaggaatttaaggatgg
gtgttgtcgcaagccttatatgattttaaaacttatgtgccattttgttt
cttattttgtgttccttaaataacaaaaaaaagtgtataatggggtccta
aaaagcatattccgattccttaatacctgagctgacataacggtatacat
ttttaatcaaggtttaaaatgattccatttgaaatcgtattagaaacaat
gggatacagttccttcgctgccgacactcaatcacaacagcccgggttta
aatgggtactcgcaaacatgagcgttttgaaaatttggtggcttcttgat
acacacacctttgtcctccaggatggtgttacaaaggatgccctagccta
ttggctggtatggagccatttagcctgggtatttcctgaatgcctcggta
aaaccaatacacgtgtgttgtgtgtaagtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_105297294_105298031
seq2: B6Ng01-244C08.b_59_796

seq1  GCCCATGCTAGACAGTGAGACTCTGCCTCAGCACACACGAATACAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGCTAGACAGTGAGACTCTGCCTCAGCACACACGAATACAAACAC  50

seq1  ACGTGCGCGTGCACACATGCACACACACACACACACACAGATGCACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCGCGTGCACACATGCACACACACACACACACACAGATGCACATAT  100

seq1  ACACATATGCATGTATCTGCACAAATACAGCAATTTTTAAAAACCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATGCATGTATCTGCACAAATACAGCAATTTTTAAAAACCCCAAA  150

seq1  TATTTAAAACTTGCAATGAAAGTAAGCAGAACCATGTGTTTAATTGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACTTGCAATGAAAGTAAGCAGAACCATGTGTTTAATTGGTCA  200

seq1  TGTTTTATCCCAGGTAATAGGACTAAAATGAGTATGTACCTTTAAAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCCCAGGTAATAGGACTAAAATGAGTATGTACCTTTAAAGGCT  250

seq1  AGCATAACTTCATACCAGAGCCATCAATGCTGCAGAAAAAGATAGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACTTCATACCAGAGCCATCAATGCTGCAGAAAAAGATAGCTACA  300

seq1  GTCTAATCTCAAATGATCATTGGTGCAAACAATACACCAATGTGCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATCTCAAATGATCATTGGTGCAAACAATACACCAATGTGCAGCAC  350

seq1  TTGGGATTGTGCATCATGAACAGGTGGGATTTGTTTTCCACACACAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTGTGCATCATGAACAGGTGGGATTTGTTTTCCACACACAGGCT  400

seq1  GCTTTAAATAAACAGTGCAATCAACATAACACATTGTAACAGCAATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAATAAACAGTGCAATCAACATAACACATTGTAACAGCAATTGAA  450

seq1  GACTAAAGTCATGTGATCATCTCAGTCACTTTAGACAAAGCATTTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGTCATGTGATCATCTCAGTCACTTTAGACAAAGCATTTCACAA  500

seq1  AAACTCTTGACTGTTTAGGAACAGATGAAATTTTCTTAACACAATAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTGACTGTTTAGGAACAGATGAAATTTTCTTAACACAATAACAA  550

seq1  AGAGTTGGCTTTTTAAAAAAAATAAACAAAATTAACCAACCCTAGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGCTTTTTAAAAAAAATAAACAAAATTAACCAACCCTAGCTAAA  600

seq1  TTAACCAATAATAATTTTAAAAAAAGACACAAAATAAAAAATGGAAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAATAATAATTTTAAAAAAAGACACAAAATAAAAAATGGAAGAGG  650

seq1  ATATATTAAAACACACTCCTCAGAAATGAAAACATAATTAAAAGACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAAACACACTCCTCAGAAATGAAAACATAATTAAAAGACTATT  700

seq1  CTGAATAATTACATGGGAAAATAACTTAGAAGAAATAC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAATTACATGGGAAAATAACTTAGAAGAAATAC  738


seq1: chr14_105483491_105484605
seq2: B6Ng01-244C08.g_67_1198 (reverse)

seq1  CTGAC-TACACACACACCACGTGTATT-GTTTTAACGA-GCAATCAGGAA  47
      ||||| ||||||||   |||||||||| |||||| ||| ||| |||||||
seq2  CTGACTTACACACAACACACGTGTATTGGTTTTACCGAGGCATTCAGGAA  50

seq1  ATTACCAAGCTAA--TGCT-CATAACAAGCAATTAGCTAAGGCAT-CTTT  93
      ||  ||| |||||   ||| |||| ||  ||||  |||| ||||| ||||
seq2  ATACCCAGGCTAAATGGCTCCATACCAGCCAATAGGCTAGGGCATCCTTT  100

seq1  GTAACA-CATCCTG--AGACAAA-GTGTGTGTATC-AGAAGC--ACAAAT  136
      |||||| |||||||   |||||| ||||||||||| ||||||   |||||
seq2  GTAACACCATCCTGGAGGACAAAGGTGTGTGTATCAAGAAGCCACCAAAT  150

seq1  TTTCAAAACGCTCATGTTTGCGAGTA-CCATTTAAACCC-GGCTGTTGTG  184
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TTTCAAAACGCTCATGTTTGCGAGTACCCATTTAAACCCGGGCTGTTGTG  200

seq1  ATTGAGTGTCGGCAGCGAAGGAACTGTAT-CCATTGTTTCTAATACGATT  233
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGAGTGTCGGCAGCGAAGGAACTGTATCCCATTGTTTCTAATACGATT  250

seq1  TCAAATGGAATCATTTTAAACCTTGATTAAAAATGTATACCGTTATGTCA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGAATCATTTTAAACCTTGATTAAAAATGTATACCGTTATGTCA  300

seq1  GCTCAGGTATTAAGGAATCGGAATATGCTTTTTAGGACCCCATTATACAC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTATTAAGGAATCGGAATATGCTTTTTAGGACCCCATTATACAC  350

seq1  TTTTTTTTGTTATTTAAGGAACACAAAATAAGAAACAAAATGGCACATAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTATTTAAGGAACACAAAATAAGAAACAAAATGGCACATAA  400

seq1  GTTTTAAAATCATATAAGGCTTGCGACAACACCCATCCTTAAATTCCTCC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATCATATAAGGCTTGCGACAACACCCATCCTTAAATTCCTCC  450

seq1  TACCGAAAGGTTATATAAAGAAATAACCTTGTGAAATAGAAGCCCATGGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAAAGGTTATATAAAGAAATAACCTTGTGAAATAGAAGCCCATGGA  500

seq1  GGCATTCACTGGCATTATGGAAATAGATTTAAGAAGTGTAAGTGCACTTG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCACTGGCATTATGGAAATAGATTTAAGAAGTGTAAGTGCACTTG  550

seq1  TCTTTCTTCCTCTTTTAATTATGTGTTTGTTTGCCATGGTGACCTAATTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCTCTTTTAATTATGTGTTTGTTTGCCATGGTGACCTAATTT  600

seq1  AGTCCAGAAGATGAGCCAACATTAAAAGCCGGTAGGAGAGGTAAGTAACC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAAGATGAGCCAACATTAAAAGCCGGTAGGAGAGGTAAGTAACC  650

seq1  CCCAGGGTGGGCTGCTTGCACTTGAGAGTTCAAAACTACACAGGCAGAGG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTGGGCTGCTTGCACTTGAGAGTTCAAAACTACACAGGCAGAGG  700

seq1  CTGGAGCCAAGGTGCATTTGAGAAGGGGGTCCACATGACAAACAGTGAAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCAAGGTGCATTTGAGAAGGGGGTCCACATGACAAACAGTGAAT  750

seq1  GGCGAGGAAATCAAATTTTTCACAATTAGTTGAACAACAACTGTGACAGC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGAAATCAAATTTTTCACAATTAGTTGAACAACAACTGTGACAGC  800

seq1  TTTAGCGCTTAGCATTTTCATTTGTGTGCTCAAATTTGGTTATCTGTCCT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCGCTTAGCATTTTCATTTGTGTGCTCAAATTTGGTTATCTGTCCT  850

seq1  CTTTTATGCAAATGCGATGTGACAGGAGAAGCTGGGAGCGCTGGAGCGGG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGCAAATGCGATGTGACAGGAGAAGCTGGGAGCGCTGGAGCGGG  900

seq1  CCAATCACTCACAACAGGGGCTAGGGCTGCTGGGCTGAGAGTCCGGATTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTCACAACAGGGGCTAGGGCTGCTGGGCTGAGAGTCCGGATTA  950

seq1  AATGGACTGGATGCTGATGGATAAATGGCAGCAGCCTCCCCGAAAGCCTC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGGATGCTGATGGATAAATGGCAGCAGCCTCCCCGAAAGCCTC  1000

seq1  ATGAACTGATTTAAAACTTCTAAGGGAGGATGCTAAGAATATAATTATGC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGATTTAAAACTTCTAAGGGAGGATGCTAAGAATATAATTATGC  1050

seq1  TTTATGCCCCAGCCTAAACTGTCAAGAAATAAAAAGATAAAAGAAAAATA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCCCAGCCTAAACTGTCAAGAAATAAAAAGATAAAAGAAAAATA  1100

seq1  TAAATTGTACCAAATGAATATTATCAGAATTC  1115
      ||||||||||||||||||||||||||||||||
seq2  TAAATTGTACCAAATGAATATTATCAGAATTC  1132


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