BAC Information

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BAC

Clone NameB6Ng01-244F04
Chromosome14 (Build37)
Map Location 78,027,160 - 78,210,054
singlet/doubletdoublet
Overlap geneD230005D02Rik, Gm1587
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755, LOC676171, EG629678
Downstream geneDnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244F04.bB6Ng01-244F04.g
ACCGA053486GA053487
length1,158992
definitionB6Ng01-244F04.b B6Ng01-244F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,208,903 - 78,210,054)(78,027,160 - 78,028,157)
sequence
gaattctttaaaccagtggttgtcaaccttcctaaagctgcaacccttct
aatacagctcctcatggtgactcccaaccagaaaattatttatattgcta
ttttattaattttgccactgttatgaaccacaacatgaatacctgatatg
caagatatttgatatttgacttctataaaagggtcatctgttctcccaaa
aggatcacaacccataggttgagacccactgccttaaactaacacagatc
tcacctcctgggctgcagctgaaggtagcagctacttccttttctagcct
tccttgcaagtagcaggtggacagatggcccaggtaccaccaatcagagt
gacaatgacaggatgctgatggtggcttcaaacgctaacagccatcctgc
ctggtgacatccagtgacaggaacatggtattgatgacataaattgtgac
ctcctcacttgacccgagcagaagccatgagctaggttctgccctcctgg
tgcttctgtgtgcttctaaatatccttctaatgagtctgtttgtatttat
agcagcctgcgttggctccagtcacacactagagactgcctgatgcattc
agcggtgtgtctctgtttcctgtccacctacatccagaatgtaggatagt
caaactgctgggaaaacaaaggatgtgtacagatctaggatataagccag
atctgcccacatagtccctaagatgcagagaccaaaaatcacagaccctg
aagcacaagtccagatagagagctgactcagaactagcagacctggaagg
aatctcagagcctgggatggtattgtccagtgtggcagcagtaatcactg
gggtatgtttaatttaaatcagtcaacacaaaatataatgagaagtaatt
tcctaggcacactagccacacactcagtgacactcacccaacaactgcca
ttttatgagcacagatatcgaatgttttgttactgcaggaagttccactg
gctgacagtggcctgcttacctcctgtaggttatagcccagtgttttctg
gcagctgatcatgggtggggagtacaaaaagcagaggcagtatcttaccg
ttttccattctcatgaccccagtctataaagagcctgtttcaaggaactt
gtgacaca
gaattcttttaacctctcagaaacaaaatatttcatgctaattcctgctt
aattggaaggaagtcttttttttttccttttttttttttttttttttttt
tttttttgtaaaaagaataccattgattgggtttgaagcctgttccactt
ctgacctctttattttaatcaaggtcacctaataaacttgcccaaacagc
tctagttctcaattaaaaaaaataaagtagcacactttaaaagcatttag
tgtgtgattaattgtgctgaactggggattcagcactcccaagggccttt
gtggggagagtggaacattagtatctgaaaaattatacccatcagaaact
caaaaaaaaaaaaaaaaaaaacccccctgtctgggtgaggattcagggaa
agttgttatcatacccaataggaaaaaagttttaatgcctgaactactct
gttcaatggaaaaaaggcagctaaagtggccatgcaaacagtttataaaa
tgcaccctgctcctcctggccaaggactcggaaaaaatggagctgtccaa
gccaggtttcttgggagctcacactctggcactagaaagcagtgttctta
gaagactgaacttagaaacacccagcgttctaacagtcctcccccgatct
tctgcacagactctgcattctgtgagcttgaggagggccagactcacctg
gaggctgtttggaaaagaatattttgttgttcaagtgacaaaagctttag
agcagctgaaaaaggaacatgcgagaccaagaacctggtgtccccagtgg
agtgcagaccagcatggagcccagaacaagtcagactccttggtgcaact
ttagcattgtctctggatagcttatccttcttcagccatgagatcctttg
ttattttgtattgttattaattcatatctattggagttagaagaccaggg
tttctctggatagacctggctatcctcggaaccccactttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78208903_78210054
seq2: B6Ng01-244F04.b_45_1202 (reverse)

seq1  TGTGTCACA--GTCCT---GACA-GCTC-TTATAGACTTGGGGTCCATGA  43
      |||||||||   ||||    ||| |||| |||||||| |||||| |||||
seq2  TGTGTCACAAGTTCCTTGAAACAGGCTCTTTATAGAC-TGGGGT-CATGA  48

seq1  GGATGGAAAA-GGTAGGATTACTGCCTCTGC-TTTTGTACT-CCCACCCA  90
      | |||||||| |||| || |||||||||||| ||||||||| ||||||||
seq2  GAATGGAAAACGGTAAGA-TACTGCCTCTGCTTTTTGTACTCCCCACCCA  97

seq1  TGATCAGCTGCCAG-AAACACT-GGCTATAACCCTACAAGGAGGTAAGCA  138
      |||||||||||||| ||||||| |||||||| ||||| ||||||||||||
seq2  TGATCAGCTGCCAGAAAACACTGGGCTATAA-CCTAC-AGGAGGTAAGCA  145

seq1  GGCCACTGTCAGCCAGTGGAACTTCCTGCAGTAACAAAAACATTCGATAT  188
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCCACTGTCAGCCAGTGGAACTTCCTGCAGTAAC-AAAACATTCGATAT  194

seq1  CTGTGCTCATAAAATGGCAGTTGTTGGGTGAGTGTCACTGAGTGTGTGGC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCATAAAATGGCAGTTGTTGGGTGAGTGTCACTGAGTGTGTGGC  244

seq1  TAGTGTGCCTAGGAAATTACTTCTCATTATATTTTGTGTTGACTGATTTA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCCTAGGAAATTACTTCTCATTATATTTTGTGTTGACTGATTTA  294

seq1  AATTAAACATACCCCAGTGATTACTGCTGCCACACTGGACAATACCATCC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACATACCCCAGTGATTACTGCTGCCACACTGGACAATACCATCC  344

seq1  CAGGCTCTGAGATTCCTTCCAGGTCTGCTAGTTCTGAGTCAGCTCTCTAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTGAGATTCCTTCCAGGTCTGCTAGTTCTGAGTCAGCTCTCTAT  394

seq1  CTGGACTTGTGCTTCAGGGTCTGTGATTTTTGGTCTCTGCATCTTAGGGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTGTGCTTCAGGGTCTGTGATTTTTGGTCTCTGCATCTTAGGGA  444

seq1  CTATGTGGGCAGATCTGGCTTATATCCTAGATCTGTACACATCCTTTGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGGCAGATCTGGCTTATATCCTAGATCTGTACACATCCTTTGTT  494

seq1  TTCCCAGCAGTTTGACTATCCTACATTCTGGATGTAGGTGGACAGGAAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCAGTTTGACTATCCTACATTCTGGATGTAGGTGGACAGGAAAC  544

seq1  AGAGACACACCGCTGAATGCATCAGGCAGTCTCTAGTGTGTGACTGGAGC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACACCGCTGAATGCATCAGGCAGTCTCTAGTGTGTGACTGGAGC  594

seq1  CAACGCAGGCTGCTATAAATACAAACAGACTCATTAGAAGGATATTTAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCAGGCTGCTATAAATACAAACAGACTCATTAGAAGGATATTTAGA  644

seq1  AGCACACAGAAGCACCAGGAGGGCAGAACCTAGCTCATGGCTTCTGCTCG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGAAGCACCAGGAGGGCAGAACCTAGCTCATGGCTTCTGCTCG  694

seq1  GGTCAAGTGAGGAGGTCACAATTTATGTCATCAATACCATGTTCCTGTCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTGAGGAGGTCACAATTTATGTCATCAATACCATGTTCCTGTCA  744

seq1  CTGGATGTCACCAGGCAGGATGGCTGTTAGCGTTTGAAGCCACCATCAGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCACCAGGCAGGATGGCTGTTAGCGTTTGAAGCCACCATCAGC  794

seq1  ATCCTGTCATTGTCACTCTGATTGGTGGTACCTGGGCCATCTGTCCACCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCATTGTCACTCTGATTGGTGGTACCTGGGCCATCTGTCCACCT  844

seq1  GCTACTTGCAAGGAAGGCTAGAAAAGGAAGTAGCTGCTACCTTCAGCTGC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGCAAGGAAGGCTAGAAAAGGAAGTAGCTGCTACCTTCAGCTGC  894

seq1  AGCCCAGGAGGTGAGATCTGTGTTAGTTTAAGGCAGTGGGTCTCAACCTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAGGTGAGATCTGTGTTAGTTTAAGGCAGTGGGTCTCAACCTA  944

seq1  TGGGTTGTGATCCTTTTGGGAGAACAGATGACCCTTTTATAGAAGTCAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTGATCCTTTTGGGAGAACAGATGACCCTTTTATAGAAGTCAAA  994

seq1  TATCAAATATCTTGCATATCAGGTATTCATGTTGTGGTTCATAACAGTGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATATCTTGCATATCAGGTATTCATGTTGTGGTTCATAACAGTGG  1044

seq1  CAAAATTAATAAAATAGCAATATAAATAATTTTCTGGTTGGGAGTCACCA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAATAAAATAGCAATATAAATAATTTTCTGGTTGGGAGTCACCA  1094

seq1  TGAGGAGCTGTATTAGAAGGGTTGCAGCTTTAGGAAGGTTGACAACCACT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCTGTATTAGAAGGGTTGCAGCTTTAGGAAGGTTGACAACCACT  1144

seq1  GGTTTAAAGAATTC  1152
      ||||||||||||||
seq2  GGTTTAAAGAATTC  1158

seq1: chr14_78027160_78028157
seq2: B6Ng01-244F04.g_66_1057

seq1  GAATTCTTTTAACCTCTCAGAAACAAAATATTTCATGCTAATTCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAACCTCTCAGAAACAAAATATTTCATGCTAATTCCTGCTT  50

seq1  AATTGGAAGGAAGTCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAGGAAGTCTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTT  100

seq1  TTTTTTTGTAAAAAGAATACCATTGATTGGGTTTGAAGCCTGTTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTAAAAAGAATACCATTGATTGGGTTTGAAGCCTGTTCCACTT  150

seq1  CTGACCTCTTTATTTTAATCAAGGTCACCTAATAAACTTGCCCAAACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTTTATTTTAATCAAGGTCACCTAATAAACTTGCCCAAACAGC  200

seq1  TCTAGTTCTCAATTAAAAAAAATAAAGTAGCACACTTTAAAAGCATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCTCAATTAAAAAAAATAAAGTAGCACACTTTAAAAGCATTTAG  250

seq1  TGTGTGATTAATTGTGCTGAACTGGGGATTCAGCACTCGCAAGGGCCTTT  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGTGATTAATTGTGCTGAACTGGGGATTCAGCACTCCCAAGGGCCTTT  300

seq1  GTGGGGAGAGTGGAACATTAGTATCTGAAAAATTATACCCATCAGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGAGTGGAACATTAGTATCTGAAAAATTATACCCATCAGAAACT  350

seq1  CAAAAAAAAAAAAAAAAAAAACCCACCTGTCTGGGTGAGGATTCAGGGAA  400
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAACCCCCCTGTCTGGGTGAGGATTCAGGGAA  400

seq1  AGTTGTTATCATACCCAATAGGAAAAGAGTTTTAATGCCTGAACTACTCT  450
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTGTTATCATACCCAATAGGAAAAAAGTTTTAATGCCTGAACTACTCT  450

seq1  GTTCAATGGAAGAAAGGCAGCTAAAGTGGCCATGCAGACAGTTTATAAAA  500
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  GTTCAATGGAAAAAAGGCAGCTAAAGTGGCCATGCAAACAGTTTATAAAA  500

seq1  TGCACCCTGCTCCTCCTGGCCAAGGACTCGGAGAAGATGGAGCTGTCCAA  550
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  TGCACCCTGCTCCTCCTGGCCAAGGACTCGGAAAAAATGGAGCTGTCCAA  550

seq1  GCCAGGTTTCTTGGGAGCTCACACTCTGGCACTAGAAAGCAGTGTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTTTCTTGGGAGCTCACACTCTGGCACTAGAAAGCAGTGTTCTTA  600

seq1  GAAGACTGAACTTAGAAACACCCAGCGTTCTAACAGTCCTCCCCCGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGAACTTAGAAACACCCAGCGTTCTAACAGTCCTCCCCCGATCT  650

seq1  TCTGCACAGACTCTGCATTCTGTGAGCTTGAGGAGGGCCAGACTCACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGACTCTGCATTCTGTGAGCTTGAGGAGGGCCAGACTCACCTG  700

seq1  GAGGCTGTTTGGAAAAGAATA-TTTGTTGTTCAGGTGACAAAGGCTTTAG  749
      ||||||||||||||||||||| ||||||||||| |||||||| |||||||
seq2  GAGGCTGTTTGGAAAAGAATATTTTGTTGTTCAAGTGACAAAAGCTTTAG  750

seq1  AGCAGCTGAGAAAGGAACATGCGAGACCAAGAA-CTGGTGTCCCCAGTGG  798
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  AGCAGCTGAAAAAGGAACATGCGAGACCAAGAACCTGGTGTCCCCAGTGG  800

seq1  AGTGCAGACCAGCATGGAGGCCAGAACAAGTCAGACTCCTTGGTGCAAC-  847
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  AGTGCAGACCAGCATGGAGCCCAGAACAAGTCAGACTCCTTGGTGCAACT  850

seq1  TTAGCATTGTCTCTGGGATAGCTTATCCCTTCTTCAGCCATGAGATTTCT  897
      |||||||||||||| ||||||||||| ||||||||||||||||||     
seq2  TTAGCATTGTCTCT-GGATAGCTTAT-CCTTCTTCAGCCATGAGA-----  893

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTT  947
           |  ||| || |||| | || || ||  ||  | | | ||||  ||
seq2  -----TCCTTTGTTATTTTGTATTGTTATTAATTCATATCTATTGGAGTT  938

seq1  TTGAGA-CAGGGTTTCTCTGGATAGCCCTGGCTATCCT-GGAA-CCCACT  994
         ||| |||||||||||||||||| |||||||||||| |||| ||||||
seq2  AGAAGACCAGGGTTTCTCTGGATAGACCTGGCTATCCTCGGAACCCCACT  988

seq1  TTGT  998
      ||||
seq2  TTGT  992