BAC Information

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BAC

Clone NameB6Ng01-244N05
Chromosome14 (Build37)
Map Location 99,693,310 - 99,859,101
singlet/doubletdoublet
Overlap geneKlf5, LOC100043400, LOC100043789, LOC668671
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397
Downstream geneLOC668672, EG546623, Klf12, LOC100043413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244N05.bB6Ng01-244N05.g
ACCGA053866GA053867
length1,135454
definitionB6Ng01-244N05.b B6Ng01-244N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,693,310 - 99,694,444)(99,858,638 - 99,859,101)
sequence
gaattccaggagatggtgtaagtgacacctgtgtaagtgcttgggaataa
agtcaggtcttctacaagagccatgagtgcttttccgtactgtgtgtgtg
tgtgtataatgtcactgtcctattgttggatacctgttatttccatatat
atatatatatatgtttattttccaggcagagagttatctatctcttagac
aggtctctctatgtcacgctgaatgagtccaggttggccctgaatttgta
actactattctgactgcatctgagtgctggggttgcagcagagtcccggt
aggcctggctaatctcccttgagcccatccacatcttctgccttcttcat
acctgttgacactgtccttccccaaactagtccccacttccctgacggca
gcagcacttgaagccgtgaccttagtcctatcactatagtctacctttca
tctaggaatctatgcctacaaggaagtttccccattgcggacctgcctgg
ggcactgccgcctgtactccacagcccggggccatgattgctgttgtcat
aagatggctagccattggctcattgtgacgctgatgaggtggcatccctg
atgttctaaaagattgtttggtgtaaccgcttcaggccaggaattgtggc
ttcccctttcctagaatattttgagtcggaattcaaatactgtccagttg
aagctgcagtatgcctggcctataacttgttcaaaggcattcatatttgc
cattttcatctgcttagtatactaacaaggtggaaaaagcaagcccagtc
cctcctaaaggtaaacctctactttttctttaaaaaaaaaaaaagtactg
ctagtgttttcaaagctggggtggggtgagctgcgctgtgtaagtatcac
agagaatgtactgaaattccaaaattaaataaaacgtattttcttgtgga
accaggggcaggagacagtgcaaccaggaatataaaattgttttcttagg
aatacatcgttgaaagtatacaaaatgaatcgtaaagtattgaagtacat
atctgtcagctcaaaagaacgaagagtccctctgttgtgtttctaagtct
tgcattcaagtgatcgcacgctttctagtcctcct
attggaaatcatgtcagaaattattttttaaatgaaggaggaggaggagg
aggaggaggaggaggaggggaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaataagaagaagaagaagaagaagaa
gaagaagaagaagaacaagaagaagaagaagaaggaagaagaagaagaag
atgaagaagaagaagaagaagaagaagaagaagaagaataagaagaagaa
gaagacgaagaagaagaaagaataagaagaagaagaagaagaagaacagg
aggaggaggaggaggaacttgttgaagttctttgtctatcaaatatatac
ctttacacctttcaatatataggaaaaatcctgacaaggaactcctcttt
aattatttatagaattagcttctttcacccgctgcctcctgcctgatgtc
ccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99693310_99694444
seq2: B6Ng01-244N05.b_46_1180

seq1  GAATTCCAGGAGATGGTGTAAGTGACACCTGTGTAAGTGCTTGGGAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGATGGTGTAAGTGACACCTGTGTAAGTGCTTGGGAATAA  50

seq1  AGTCAGGTCTTCTACAAGAGCCATGAGTGCTTTTCCGTACTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTCTTCTACAAGAGCCATGAGTGCTTTTCCGTACTGTGTGTGTG  100

seq1  TGTGTATAATGTCACTGTCCTATTGTTGGATACCTGTTATTTCCATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATAATGTCACTGTCCTATTGTTGGATACCTGTTATTTCCATATAT  150

seq1  ATATATATATATGTTTATTTTCCAGGCAGAGAGTTATCTATCTCTTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGTTTATTTTCCAGGCAGAGAGTTATCTATCTCTTAGAC  200

seq1  AGGTCTCTCTATGTCACGCTGAATGAGTCCAGGTTGGCCCTGAATTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTCTATGTCACGCTGAATGAGTCCAGGTTGGCCCTGAATTTGTA  250

seq1  ACTACTATTCTGACTGCATCTGAGTGCTGGGGTTGCAGCAGAGTCCCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATTCTGACTGCATCTGAGTGCTGGGGTTGCAGCAGAGTCCCGGT  300

seq1  AGGCCTGGCTAATCTCCCTTGAGCCCATCCACATCTTCTGCCTTCTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGCTAATCTCCCTTGAGCCCATCCACATCTTCTGCCTTCTTCAT  350

seq1  ACCTGTTGACACTGTCCTTCCCCAAACTAGTCCCCACTTCCCTGACGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGACACTGTCCTTCCCCAAACTAGTCCCCACTTCCCTGACGGCA  400

seq1  GCAGCACTTGAAGCCGTGACCTTAGTCCTATCACTATAGTCTACCTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTTGAAGCCGTGACCTTAGTCCTATCACTATAGTCTACCTTTCA  450

seq1  TCTAGGAATCTATGCCTACAAGGAAGTTTCCCCATTGCGGACCTGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATCTATGCCTACAAGGAAGTTTCCCCATTGCGGACCTGCCTGG  500

seq1  GGCACTGCCGCCTGTACTCCACAGCCCGGGGCCATGATTGCTGTTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCCGCCTGTACTCCACAGCCCGGGGCCATGATTGCTGTTGTCAT  550

seq1  AAGATGGCTAGCCATTGGCTCATTGTGACGCTGATGAGGTGGCATCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTAGCCATTGGCTCATTGTGACGCTGATGAGGTGGCATCCCTG  600

seq1  ATGTTCTAAAAGATTGTTTGGTGTAACCGCTTCAGGCCAGGAATTGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTAAAAGATTGTTTGGTGTAACCGCTTCAGGCCAGGAATTGTGGC  650

seq1  TTCCCCTTTCCTAGAATATTTTGAGTCGGAATTCAAATACTGTCCAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTCCTAGAATATTTTGAGTCGGAATTCAAATACTGTCCAGTTG  700

seq1  AAGCTGCAGTATGCCTGGCCTATAACTTGTTCAAAGGCATTCATATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCAGTATGCCTGGCCTATAACTTGTTCAAAGGCATTCATATTTGC  750

seq1  CATTTTCATCTGCTTAGTATACTAACAAGGTGGAAAAAGCAAGCCCAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATCTGCTTAGTATACTAACAAGGTGGAAAAAGCAAGCCCAGTC  800

seq1  CCTCCTAAAGGTAAACCTCTAC-TTTTCTTT-AAAAAAAAAAAAGTACTG  848
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  CCTCCTAAAGGTAAACCTCTACTTTTTCTTTAAAAAAAAAAAAAGTACTG  850

seq1  CTAGTGTTTTCAAAGCTGGG--TGGGTGAGCTGCGCTGTGTAAGTATCAC  896
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  CTAGTGTTTTCAAAGCTGGGGTGGGGTGAGCTGCGCTGTGTAAGTATCAC  900

seq1  AGAGAATGTACTGAAA-TCCAAAATTAAATAAAACGTA-TTTCTTGT-GA  943
      |||||||||||||||| ||||||||||||||||||||| |||||||| ||
seq2  AGAGAATGTACTGAAATTCCAAAATTAAATAAAACGTATTTTCTTGTGGA  950

seq1  ACCAGGGGCAGGAGACAGTGCAACCAGG-ATATTAAATTGTTTTCTTAGG  992
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  ACCAGGGGCAGGAGACAGTGCAACCAGGAATATAAAATTGTTTTCTTAGG  1000

seq1  AATACATCGTTTGAAAGTATACAAAAATGAAATCGTTAAAGTATTGAAGT  1042
      ||||||||| |||||||||||| |||||| ||||| ||||||||||||| 
seq2  AATACATCG-TTGAAAGTATAC-AAAATG-AATCG-TAAAGTATTGAAG-  1045

seq1  TACATATCTGTCAGCTCAAAAGAAACGAAGGAGT-CCTCTGTTGTGTTTC  1091
      |||||||||||||||||||||| |||||| |||| |||||||||||||||
seq2  TACATATCTGTCAGCTCAAAAG-AACGAA-GAGTCCCTCTGTTGTGTTTC  1093

seq1  TAAAGTTCTTGCATCAAAGTGATCGGCACGCTTTCTAGT-CTCCT  1135
      |||   ||||||||  |||||||| |||||||||||||| |||||
seq2  TAA--GTCTTGCATTCAAGTGATC-GCACGCTTTCTAGTCCTCCT  1135

seq1: chr14_99858638_99859101
seq2: B6Ng01-244N05.g_68_527 (reverse)

seq1  TGGGGACCTCAGGCAGGCTGCAGCGGGTGAATGAAGCTAATTCTATAAAT  50
      ||||||| |||||||||  |||||||||||| ||||||||||||||||||
seq2  TGGGGACATCAGGCAGGAGGCAGCGGGTGAAAGAAGCTAATTCTATAAAT  50

seq1  TATTAAAGAGGATTTCCTTTTCATGTTTTTTCCTATATATTGAAAGCTGT  100
       ||||||||||| |||||| ||| | |||||||||||||||||||| |||
seq2  AATTAAAGAGGAGTTCCTTGTCAGGATTTTTCCTATATATTGAAAGGTGT  100

seq1  AAAGGTATATATTTGCTTTGACATAGAACTTCAACAACTTCCTCCTCCTC  150
      |||||||||||||||  | |||| ||||||||||||| ||||||||||||
seq2  AAAGGTATATATTTG-ATAGACAAAGAACTTCAACAAGTTCCTCCTCCTC  149

seq1  CTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTTCTTCT  200
      |||||||| ||||||||||||||||||||||| |||||||||||||||| 
seq2  CTCCTCCTGTTCTTCTTCTTCTTCTTCTTCTTATTCTTTCTTCTTCTTCG  199

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  249

seq1  TTCTTCTTCTTCTTCTTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  300
      ||| |||||||||||||||||   |||||||||||||||||| |||||||
seq2  TTCATCTTCTTCTTCTTCTTC---CTTCTTCTTCTTCTTCTTGTTCTTCT  296

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCTTCTTCTTCTTCTTC  346

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCTCCTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCTCCTCCTC  396

seq1  CTCCTCCTCCTCCTCCTCCTCCTTCATTTAAAAAATAATTTCTGACATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCTCCTCCTCCTCCTTCATTTAAAAAATAATTTCTGACATGA  446

seq1  TTTCCAATGAATTC  464
      ||||||||||||||
seq2  TTTCCAATGAATTC  460