BAC Information

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BAC

Clone NameB6Ng01-247A21
Chromosome14 (Build37)
Map Location 99,345,746 - 99,467,668
singlet/doubletdoublet
Overlap geneLOC100043787, 2410129H14Rik, 6720463M24Rik
Upstream geneDach1, LOC635593, LOC619716
Downstream geneDis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247A21.bB6Ng01-247A21.g
ACCGA055497GA055498
length1,1781,098
definitionB6Ng01-247A21.b B6Ng01-247A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,345,746 - 99,346,909)(99,466,581 - 99,467,668)
sequence
gaattccattttttttcacaacttgatggcacacaataaatatgaggttg
tttgcctgctttatttaagtccccaatagtatttgtaactaccaaagaga
taaagccagtgagaaattgtgtctgtggccttgatgtttgatcacaaaag
ggctgagcgacaggaaagactattttgtcagtcacccattacaaatattc
tacattgtgttaggctttggcggggcccaaactgaccaacatgaaatact
tcatctccttggacaacacatcccgtaaattatgaaaagaaaatggtatt
ttatgtgagccaggcaacctcattttctaggcagcacacttcattcatat
tgctgttattaataggttacttacaggattcataactggtgccactgtgt
gaaggtacccggacatggacaatcaccacagtgaaaagtagtatatcttg
gttctttccagagtggtaactttatcaaaactatcagaggtgtcctttga
acttcactccaaccctgtgtaattggattctacgttatgttcacctgagt
tcccagaagacattttgactttaaaacttccgaagtatcctttccactaa
tgaattttgcctactaaagttagcaattcttctaagactcctgcatgtaa
aagtgcctagttgtacttttgcaactctcacactagctaggctcttgcct
gagctaacatattcgatcttttttaaaattagaagtagaagaatacacag
ggtgatatgtcactcgaaagtgagctcggacagataattaaggattaaaa
tctaaattatcacctctcttgcaaggtacagcaagaagcacagatgcctt
ctcatctcctcagagaaatacagatgcaatgtaccagataagacactctg
tagttttcattataaagttaatatttatcttacaacattgagtttatctt
accaacatatctcattcagaaaaagaatttcttatttaccacattaaagt
aaaatatgctatgagatacgtgttaaaatttttaataaaatcccaccctt
atcttgtttggatcaaagaagaagcctggctcagcttgagaataacagca
acacccgatagacaaaagtactaattccaaaatacagagagccccagtta
acagcaccacatgttgggcccaagccta
gaattcccatcatccactggctcttttatccacgtgctttcagctactgt
gtctgtaggatcgaccatatccacggtgtcattttccctctcactttccg
catcgtccagcactgctcgctctttctcagcaataccagagtgactctgt
gtaacagacatggcagtgacaactcgaggctcaccacaagcatttgtgct
gagtggagccgcgcctgtgcaggaaacgtccgcctcttcatcttcactgt
gagcctcaagggtaaaaggtatgcggaccagggaggacaaacactgaggg
ccacctctcagtctccgaggagaccagtttttgattggcgagcagccatc
tatgtacggactcctgatgctcgggttaacgatccccgtagaagctgttg
cacacgaagcttcgggagaatgaaacgtaagcttcctgggttctggaggg
gcagagggaaaatcagatcacaaaaccacggaaaacagaaaatggcagaa
aaaaaagatggattcctgttacagttgtgtttactggagtgaaattttag
tgttaataataacggaaaaggccagtgaatacctcaataaattcaacctc
aaaaatggtttctatttctctttgccaattttaactaaaatgttttctta
ttaattatttcttcatgattatactgcatcatgccaaagttgttcacacc
cagagaagatccctaacaagttggcttccggacaaacttaatgacggtac
taggcaaatgtgttattatataaaatacttatagtaatacccaaaggcca
acaaaaactggaaagtaatatttacaataataaaaagcctaacaatacac
aaaatgataaaaatgcttttaatactgtctacaatgaaaaatttcagttg
aaacaaccctttatgataaacgtagtaaaatccatccaaagcctttaaaa
acccgggcagagggatccgtacagctctggcagagcacttgccctagcgt
tgtctgacacctgaggtcagtcctcgaaggacagcgagggacaacaaggc
ctttcagaaagacctgacctctgatgaaacttactttctgggaaacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99345746_99346909
seq2: B6Ng01-247A21.b_46_1223

seq1  GAATTCCATTTTTTTTCACAACTTGATGGCACACAATAAATATGAGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTTTTTCACAACTTGATGGCACACAATAAATATGAGGTTG  50

seq1  TTTGCCTGCTTTATTTAAGTCCCCAATAGTATTTGTAACTACCAAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGCTTTATTTAAGTCCCCAATAGTATTTGTAACTACCAAAGAGA  100

seq1  TAAAGCCAGTGAGAAATTGTGTCTGTGGCCTTGATGTTTGATCACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGTGAGAAATTGTGTCTGTGGCCTTGATGTTTGATCACAAAAG  150

seq1  GGCTGAGCGACAGGAAAGACTATTTTGTCAGTCACCCATTACAAATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCGACAGGAAAGACTATTTTGTCAGTCACCCATTACAAATATTC  200

seq1  TACATTGTGTTAGGCTTTGGCGGGGCCCAAACTGACCAACATGAAATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTGTTAGGCTTTGGCGGGGCCCAAACTGACCAACATGAAATACT  250

seq1  TCATCTCCTTGGACAACACATCCCGTAAATTATGAAAAGAAAATGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCTTGGACAACACATCCCGTAAATTATGAAAAGAAAATGGTATT  300

seq1  TTATGTGAGCCAGGCAACCTCATTTTCTAGGCAGCACACTTCATTCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAGCCAGGCAACCTCATTTTCTAGGCAGCACACTTCATTCATAT  350

seq1  TGCTGTTATTAATAGGTTACTTACAGGATTCATAACTGGTGCCACTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATTAATAGGTTACTTACAGGATTCATAACTGGTGCCACTGTGT  400

seq1  GAAGGTACCCGGACATGGACAATCACCACAGTGAAAAGTAGTATATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTACCCGGACATGGACAATCACCACAGTGAAAAGTAGTATATCTTG  450

seq1  GTTCTTTCCAGAGTGGTAACTTTATCAAAACTATCAGAGGTGTCCTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCCAGAGTGGTAACTTTATCAAAACTATCAGAGGTGTCCTTTGA  500

seq1  ACTTCACTCCAACCCTGTGTAATTGGATTCTACGTTATGTTCACCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTCCAACCCTGTGTAATTGGATTCTACGTTATGTTCACCTGAGT  550

seq1  TCCCAGAAGACATTTTGACTTTAAAACTTCCGAAGTATCCTTTCCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGACATTTTGACTTTAAAACTTCCGAAGTATCCTTTCCACTAA  600

seq1  TGAATTTTGCCTACTAAAGTTAGCAATTCTTCTAAGACTCCTGCATGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGCCTACTAAAGTTAGCAATTCTTCTAAGACTCCTGCATGTAA  650

seq1  AAGTGCCTAGTTGTACTTTTGCAACTCTCACACTAGCTAGGCTCTTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTAGTTGTACTTTTGCAACTCTCACACTAGCTAGGCTCTTGCCT  700

seq1  GAGCTAACATATTCGATCTTTTTTAAAATTAGAAGTAGAAGAATACACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAACATATTCGATCTTTTTTAAAATTAGAAGTAGAAGAATACACAG  750

seq1  GGTGATATGTCACTCGAAAGTGAGCTCGGACAGATAATTAAGGATTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATGTCACTCGAAAGTGAGCTCGGACAGATAATTAAGGATTAAAA  800

seq1  TCTAAATTATCACCTCTCTTGCAAGGTACAGCAAGAAGCACAGATGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTATCACCTCTCTTGCAAGGTACAGCAAGAAGCACAGATGCCTT  850

seq1  CTCATCTCCTCAGAGAAATACAGATGCAATGTACCAGATAAGACACTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCCTCAGAGAAATACAGATGCAATGTACCAGATAAGACACTCTG  900

seq1  TAGTTTTCATTATAAAGTTAATATTTATCTTACAACATTGAGTTTATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCATTATAAAGTTAATATTTATCTTACAACATTGAGTTTATCTT  950

seq1  ACCAACATATCTCATTCAGAAAAAGAATTTCTTTATTTACCACATTAAAG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCAACATATCTCATTCAGAAAAAGAATTTC-TTATTTACCACATTAAAG  999

seq1  TAAATATTGCTATGAGATACGTGTT-AAATTTTTAATAAAAT-CCACCC-  1047
      ||||   |||||||||||||||||| |||||||||||||||| |||||| 
seq2  TAAAATATGCTATGAGATACGTGTTAAAATTTTTAATAAAATCCCACCCT  1049

seq1  TATCTTGTTTGGATCAAAG-AGA--GCTGGCTCAGC-TGAG-ATACAAGC  1092
      ||||||||||||||||||| |||   |||||||||| |||| |||  |||
seq2  TATCTTGTTTGGATCAAAGAAGAAGCCTGGCTCAGCTTGAGAATAACAGC  1099

seq1  AACACCAAATAAAAAAAAAATACCTAATTCC-AAATAC--AGAGCCCCAG  1139
      ||||||  || | | |||| || |||||||| ||||||  ||||||||||
seq2  AACACCCGAT-AGACAAAAGTA-CTAATTCCAAAATACAGAGAGCCCCAG  1147

seq1  T--ACAGCA-CACATGT--GGCCC-AGCCTA  1164
      |  |||||| |||||||  ||||| ||||||
seq2  TTAACAGCACCACATGTTGGGCCCAAGCCTA  1178

seq1: chr14_99466581_99467668
seq2: B6Ng01-247A21.g_65_1162 (reverse)

seq1  TCGTTTCCCAG-AAGTAAGGTTTCATCAGAAGGGTCAAGTC-TTCTG-AA  47
      ||||||||||| |||||| |||||||||||  ||||| ||| ||||| ||
seq2  TCGTTTCCCAGAAAGTAA-GTTTCATCAGA--GGTCAGGTCTTTCTGAAA  47

seq1  GGCTTTGTTGTCCCTCGCTGTCC-TCGA-GACTGACCTCAGGTGTCAGAC  95
      ||| ||||||||||||||||||| |||| |||||||||||||||||||||
seq2  GGCCTTGTTGTCCCTCGCTGTCCTTCGAGGACTGACCTCAGGTGTCAGAC  97

seq1  -ACGCTA-GGCAAGTGCTCTGCCAGAGCTGTACGGAT-CCTCTGCCCGGG  142
       |||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AACGCTAGGGCAAGTGCTCTGCCAGAGCTGTACGGATCCCTCTGCCCGGG  147

seq1  TTTTT-AAGGCTTTGGATGGATTTTACTACGTTTATCATAAA-GGTTGTT  190
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTAAAGGCTTTGGATGGATTTTACTACGTTTATCATAAAGGGTTGTT  197

seq1  TCAACTG-AATTTTTCATTGTAGACAGTATT-AAAGCATTTTTATCATTT  238
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAACTGAAATTTTTCATTGTAGACAGTATTAAAAGCATTTTTATCATTT  247

seq1  TGTGTATTGTTAGGCTTTTTATTATTGTAAATATTACTTTCCAGTTTTTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTGTTAGGCTTTTTATTATTGTAAATATTACTTTCCAGTTTTTG  297

seq1  TTGGCCTTTGGGTATTACTATAAGTATTTTATATAATAACACATTTGCCT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTTGGGTATTACTATAAGTATTTTATATAATAACACATTTGCCT  347

seq1  AGTACCGTCATTAAG-TTGTCCGGAAGCCAACTTGTTAGGGATCTTCTCT  387
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTACCGTCATTAAGTTTGTCCGGAAGCCAACTTGTTAGGGATCTTCTCT  397

seq1  GGGTGTGAACAACTTTGGCATGATGCAGTATAATCATGAAGAAATAATTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGAACAACTTTGGCATGATGCAGTATAATCATGAAGAAATAATTA  447

seq1  ATAAGAAAACATTTTAGTTAAAATTGGCAAAGAGAAATAGAAACCATTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAACATTTTAGTTAAAATTGGCAAAGAGAAATAGAAACCATTTT  497

seq1  TGAGGTTGAATTTATTGAGGTATTCACTGGCCTTTTCCGTTATTATTAAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGAATTTATTGAGGTATTCACTGGCCTTTTCCGTTATTATTAAC  547

seq1  ACTAAAATTTCACTCCAGTAAACACAACTGTAACAGGAATCCATCTTTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTTCACTCCAGTAAACACAACTGTAACAGGAATCCATCTTTTT  597

seq1  TTTCTGCCATTTTCTGTTTTCCGTGGTTTTGTGATCTGATTTTCCCTCTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCCATTTTCTGTTTTCCGTGGTTTTGTGATCTGATTTTCCCTCTG  647

seq1  CCCCTCCAGAACCCAGGAAGCTTACGTTTCATTCTCCCGAAGCTTCGTGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCAGAACCCAGGAAGCTTACGTTTCATTCTCCCGAAGCTTCGTGT  697

seq1  GCAACAGCTTCTACGGGGATCGTTAACCCGAGCATCAGGAGTCCGTACAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCTTCTACGGGGATCGTTAACCCGAGCATCAGGAGTCCGTACAT  747

seq1  AGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTCGGAGACTGAGAGGTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTCGGAGACTGAGAGGTG  797

seq1  GCCCTCAGTGTTTGTCCTCCCTGGTCCGCATACCTTTTACCCTTGAGGCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAGTGTTTGTCCTCCCTGGTCCGCATACCTTTTACCCTTGAGGCT  847

seq1  CACAGTGAAGATGAAGAGGCGGACGTTTCCTGCACAGGCGCGGCTCCACT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAAGATGAAGAGGCGGACGTTTCCTGCACAGGCGCGGCTCCACT  897

seq1  CAGCACAAATGCTTGTGGTGAGCCTCGAGTTGTCACTGCCATGTCTGTTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAATGCTTGTGGTGAGCCTCGAGTTGTCACTGCCATGTCTGTTA  947

seq1  CACAGAGTCACTCTGGTATTGCTGAGAAAGAGCGAGCAGTGCTGGACGAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCACTCTGGTATTGCTGAGAAAGAGCGAGCAGTGCTGGACGAT  997

seq1  GCGGAAAGTGAGAGGGAAAATGACACCGTGGATATGGTCGATCCTACAGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAAGTGAGAGGGAAAATGACACCGTGGATATGGTCGATCCTACAGA  1047

seq1  CACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGGGAATT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGGGAATT  1097

seq1  C  1088
      |
seq2  C  1098