BAC Information

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BAC

Clone NameB6Ng01-248E06
Chromosome14 (Build37)
Map Location 75,937,247 - 76,061,791
singlet/doubletdoublet
Overlap geneSpert, 4930564B18Rik
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912
Downstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248E06.bB6Ng01-248E06.g
ACCGA056386GA056387
length1,1181,055
definitionB6Ng01-248E06.b B6Ng01-248E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,060,687 - 76,061,791)(75,937,247 - 75,938,307)
sequence
gaattctcttgttaacccccctgcccctgtaacgtgttttacatattcta
gtgtggcattggagtttgcccggtccaagaagctcttctctgtgccttta
aaattgttccaacatctccctgcagggtttctagtgctttttcacttttt
ttttttttttgctagcaggtcgtttattttcaacgcctcgtgctttatac
acagttccattcgcttgacagcattgtgtttgtcctactccagtgggtaa
tatatttacacagatccagcacatggaggggacatgttaagaatacttga
tccatactgtgccgaagaaaagcaagagctgctatttttcagtattagca
ttacactcggtatttggacagcggagatcttaggatcccaagagggagcc
tgatggtagaggcacacagagaagaatttgctggccatagagcagtcatt
tctgcaatgctcagcttccacaagggtagcaggaattgaggatgctatag
ctgaagagatccaagagaatgtaaggataaacgctgagggtaacaaaacc
agtcccaggaatatagtttagttcttaatttaggtccgcatcaagatgat
tcagatgactcggggcttttagtttctctacctgattggatatgatcatg
cattcaggacatcctgggaagatgccacatgaatctctatgccaggacac
attagctagagctcgcaaatagcgcagtggccgttgttgccaaagtaaaa
cccaacgcaaggtgatgctgacaattccaagaatgggactgtaaaaaaat
gtcagtccttggctgagagccatcactcagcagtgtggtaagaatatccc
tttctagtgggggctgcatctgggaagcagtgtctggtggccctagtgcc
agactgtaggcctgttgttcttaggaaataccctctacgtgtttgaggat
ggcccttgggttctctgctccttacttcctgagtgcctggggatcaccgg
ccatgcaccacccacattccagtttatgttgtgtaaaggccaaccctagg
tcctcatgggtgcttaccagcaccttcttacaactagcttacttccagtc
tctaccggctgtttgtaa
gaattcctgaaggcagaagacagctatgccactgtgatgggaaatccagt
ttacagcaagagacaaaagtcttcagaaaacgatactgtgtgccttaaca
acttcattctctgtgttttaagatgtgcacaggatttattttcctcggga
atggtaagatctcaggcatagacacaattgcatttacaagaaaagcttat
tccttttttctagtccgggagaggactcttcctctctctcccctccccag
aaagtgtacagagaaaaccagggtcaagcaggaggcagaaggacggagga
aagcctgggctagcgcctctgtgcttctttcgctggagggacagtggaga
cagtctgatcaagcctgctgttggctagtttgagttaggtcggagagatg
tggatcctggacatgacagttggtgtctagctttggatgatttaggggcg
gaaacagtgtcccagataactaacaggtcaggatatgggctctggattaa
ttgtgttgcacactaaaggtaatctgtctgctattctaatcctgagagga
cagtgcaacccccaggcctgtaagacccaggtatcaacacatcaaaaaat
acagaaaaggataaacatgactaatgcaacccttcactgtaaaatctcac
ttttctggacaaataaaaccataatctaaaagctttcatcttttgtagga
aggtcctgtgggtggaaggaattgtaatctcaatggaaaattctctcttc
acagttggctagccaggtggggtgaagcccaaacagagaccgtgggatca
gcagagcttagtctgcagcctgtcaggaggagcagaaagattcataagat
gacaagttattctgtggtgtgccccaggacaggcaagaaaaggaagacat
gtcagtccgttaaggcttctgggttgcaataacaaaatccacttcagcca
actgaatcaaacatacaaaaatataaggccatgtacgtcggtgcatccct
gtatgtagcacaatgaggcttagaggcaaagatttcaggttcagtcagcc
tgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_76060687_76061791
seq2: B6Ng01-248E06.b_44_1161 (reverse)

seq1  TTACAAACAGCCCGTAGAGACTGGGAAGTAGCTTAGTTGGTAGA--GTGC  48
      |||||||||||| ||||||||| |||||||   ||||||  |||  ||||
seq2  TTACAAACAGCCGGTAGAGACT-GGAAGTAAGCTAGTTGTAAGAAGGTGC  49

seq1  TTGGTAGCACCCATGAGGCCCTAGGGTTGGCCCCTTACACCACATAAACT  98
      | |  ||||||||||||| ||||||||||| || |||||| |||||||||
seq2  TGGTAAGCACCCATGAGGACCTAGGGTTGG-CCTTTACACAACATAAACT  98

seq1  GG-ATGT-GGTGGTGCAT-GCCGGTGATCCC--AGCACTCAGGAAGTA--  141
      || |||| |||||||||| ||||||||||||   ||||||||||||||  
seq2  GGAATGTGGGTGGTGCATGGCCGGTGATCCCCAGGCACTCAGGAAGTAAG  148

seq1  GAGCAGAG-ACCCAA-GGCCATCCTCAAACACGTAGAGGGTATTTCCT-A  188
      |||||||| |||||| |||||||||||||||||||||||||||||||| |
seq2  GAGCAGAGAACCCAAGGGCCATCCTCAAACACGTAGAGGGTATTTCCTAA  198

seq1  GAAC-ACAGGCCTACAGTCTGGCACTA-GGCCACCAGACACTGCTTCCCA  236
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAACAACAGGCCTACAGTCTGGCACTAGGGCCACCAGACACTGCTTCCCA  248

seq1  GATGCAGCCCCCACTAG-AAGGGATATTCTTACCACACTGCTGAGTGATG  285
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATGCAGCCCCCACTAGAAAGGGATATTCTTACCACACTGCTGAGTGATG  298

seq1  GCTCTCAGCCAAGGACTGACATTTTTTTACAGTCCCATTCTTGGAATTGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGCCAAGGACTGACATTTTTTTACAGTCCCATTCTTGGAATTGT  348

seq1  CAGCATCACCTTGCGTTGGGTTTTACTTTGGCAACAACGGCCACTGCGCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCACCTTGCGTTGGGTTTTACTTTGGCAACAACGGCCACTGCGCT  398

seq1  ATTTGCGAGCTCTAGCTAATGTGTCCTGGCATAGAGATTCATGTGGCATC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCGAGCTCTAGCTAATGTGTCCTGGCATAGAGATTCATGTGGCATC  448

seq1  TTCCCAGGATGTCCTGAATGCATGATCATATCCAATCAGGTAGAGAAACT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGATGTCCTGAATGCATGATCATATCCAATCAGGTAGAGAAACT  498

seq1  AAAAGCCCCGAGTCATCTGAATCATCTTGATGCGGACCTAAATTAAGAAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCCCGAGTCATCTGAATCATCTTGATGCGGACCTAAATTAAGAAC  548

seq1  TAAACTATATTCCTGGGACTGGTTTTGTTACCCTCAGCGTTTATCCTTAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATATTCCTGGGACTGGTTTTGTTACCCTCAGCGTTTATCCTTAC  598

seq1  ATTCTCTTGGATCTCTTCAGCTATAGCATCCTCAATTCCTGCTACCCTTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTGGATCTCTTCAGCTATAGCATCCTCAATTCCTGCTACCCTTG  648

seq1  TGGAAGCTGAGCATTGCAGAAATGACTGCTCTATGGCCAGCAAATTCTTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTGAGCATTGCAGAAATGACTGCTCTATGGCCAGCAAATTCTTC  698

seq1  TCTGTGTGCCTCTACCATCAGGCTCCCTCTTGGGATCCTAAGATCTCCGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCCTCTACCATCAGGCTCCCTCTTGGGATCCTAAGATCTCCGC  748

seq1  TGTCCAAATACCGAGTGTAATGCTAATACTGAAAAATAGCAGCTCTTGCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAATACCGAGTGTAATGCTAATACTGAAAAATAGCAGCTCTTGCT  798

seq1  TTTCTTCGGCACAGTATGGATCAAGTATTCTTAACATGTCCCCTCCATGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCGGCACAGTATGGATCAAGTATTCTTAACATGTCCCCTCCATGT  848

seq1  GCTGGATCTGTGTAAATATATTACCCACTGGAGTAGGACAAACACAATGC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCTGTGTAAATATATTACCCACTGGAGTAGGACAAACACAATGC  898

seq1  TGTCAAGCGAATGGAACTGTGTATAAAGCACGAGGCGTTGAAAATAAACG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCGAATGGAACTGTGTATAAAGCACGAGGCGTTGAAAATAAACG  948

seq1  ACCTGCTAGCAAAAAAAAAAAAAAAGTGAAAAAGCACTAGAAACCCTGCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTAGCAAAAAAAAAAAAAAAGTGAAAAAGCACTAGAAACCCTGCA  998

seq1  GGGAGATGTTGGAACAATTTTAAAGGCACAGAGAAGAGCTTCTTGGACCG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGTTGGAACAATTTTAAAGGCACAGAGAAGAGCTTCTTGGACCG  1048

seq1  GGCAAACTCCAATGCCACACTAGAATATGTAAAACACGTTACAGGGGCAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACTCCAATGCCACACTAGAATATGTAAAACACGTTACAGGGGCAG  1098

seq1  GGGGGTTAACAAGAGAATTC  1105
      ||||||||||||||||||||
seq2  GGGGGTTAACAAGAGAATTC  1118

seq1: chr14_75937247_75938307
seq2: B6Ng01-248E06.g_64_1118

seq1  GAATTCCTGAAGGCAGAAGACAGCTATGCCACTGTGATGGGAAATCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGGCAGAAGACAGCTATGCCACTGTGATGGGAAATCCAGT  50

seq1  TTACAGCAAGAGACAAAAGTCTTCAGAAAACGATACTGTGTGCCTTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAAGAGACAAAAGTCTTCAGAAAACGATACTGTGTGCCTTAACA  100

seq1  ACTTCATTCTCTGTGTTTTAAGATGTGCACAGGATTTATTTTCCTCGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCTCTGTGTTTTAAGATGTGCACAGGATTTATTTTCCTCGGGA  150

seq1  ATGGTAAGATCTCAGGCATAGACACAATTGCATTTACAAGAAAAGCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGATCTCAGGCATAGACACAATTGCATTTACAAGAAAAGCTTAT  200

seq1  TCCTTTTTTCTAGTCCGGGAGAGGACTCTTCCTCTCTCTCCCCTCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTCTAGTCCGGGAGAGGACTCTTCCTCTCTCTCCCCTCCCCAG  250

seq1  AAAGTGTACAGAGAAAACCAGGGTCAAGCAGGAGGCAGAAGGACGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTACAGAGAAAACCAGGGTCAAGCAGGAGGCAGAAGGACGGAGGA  300

seq1  AAGCCTGGGCTAGCGCCTCTGTGCTTCTTTCGCTGGAGGGACAGTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGCTAGCGCCTCTGTGCTTCTTTCGCTGGAGGGACAGTGGAGA  350

seq1  CAGTCTGATCAAGCCTGCTGTTGGCTAGTTTGAGTTAGGTCGGAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGATCAAGCCTGCTGTTGGCTAGTTTGAGTTAGGTCGGAGAGATG  400

seq1  TGGATCCTGGACATGACAGTTGGTGTCTAGCTTTGGATGATTTAGGGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTGGACATGACAGTTGGTGTCTAGCTTTGGATGATTTAGGGGCG  450

seq1  GAAACAGTGTCCCAGATAACTAACAGGTCAGGATATGGGCTCTGGATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTGTCCCAGATAACTAACAGGTCAGGATATGGGCTCTGGATTAA  500

seq1  TTGTGTTGCACACTAAAGGTAATCTGTCTGCTATTCTAATCCTGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGCACACTAAAGGTAATCTGTCTGCTATTCTAATCCTGAGAGGA  550

seq1  CAGTGCAACCCCCAGGCCTGTAAGACCCAGGTATCAACACATCAAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAACCCCCAGGCCTGTAAGACCCAGGTATCAACACATCAAAAAAT  600

seq1  ACAGAAAAGGATAAACATGACTAATGCAACCCTTCACTGTAAAATCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGGATAAACATGACTAATGCAACCCTTCACTGTAAAATCTCAC  650

seq1  TTTTCTGGACAAATAAAACCATAATCTAAAAGCTTTCATCTTTTGTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGACAAATAAAACCATAATCTAAAAGCTTTCATCTTTTGTAGGA  700

seq1  AGGTCCTGTGGGTGGAAGGAATTGTAATCTCAATGGAAAATTCTCTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGTGGGTGGAAGGAATTGTAATCTCAATGGAAAATTCTCTCTTC  750

seq1  ACAGTTGGCTAGCCAGGTGGGGTGAAGCCCAAACAGAGACCGTGGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGCTAGCCAGGTGGGGTGAAGCCCAAACAGAGACCGTGGGATCA  800

seq1  GCAGAGCTTAGTCTGCAGCCTGTCAGGAGGAGCAGAAAGATTCATAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTAGTCTGCAGCCTGTCAGGAGGAGCAGAAAGATTCATAAGAT  850

seq1  GACAAGTTATTCTGTGGTGTGCCCCAGGACAGGCAAGAAAAGGAAGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTATTCTGTGGTGTGCCCCAGGACAGGCAAGAAAAGGAAGACAT  900

seq1  GTCAGTCCGTTAAGGCTTCT-GGTTGCAAATAACAAAATCCACTTCAGCC  949
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  GTCAGTCCGTTAAGGCTTCTGGGTTGC-AATAACAAAATCCACTTCAGCC  949

seq1  AACTGAATCAAAACATACAAAATATTAAGGCCATGTACGTCGGTGCATCC  999
      ||||||||| ||||||||||||   |||||||||||||||||||||||||
seq2  AACTGAATC-AAACATACAAAAATATAAGGCCATGTACGTCGGTGCATCC  998

seq1  CTGTAATTGTAGCACAAAGGAGGCTTAGAGGGAAAGATTTCAAGTTCAAG  1049
      |||||  |||||||| || |||||||||||| |||||||||| |||||  
seq2  CTGTA--TGTAGCAC-AATGAGGCTTAGAGGCAAAGATTTCAGGTTCA--  1043

seq1  GCCAGCCTGGGC  1061
      | ||||||||||
seq2  GTCAGCCTGGGC  1055