BAC Information

Click to search

BAC

Clone NameB6Ng01-248M03
Chromosome14 (Build37)
Map Location 112,207,896 - 112,209,037
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
Downstream geneLOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248M03.bB6Ng01-248M03.g
ACCGA056754GA056755
length1,1371,174
definitionB6Ng01-248M03.b B6Ng01-248M03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacgtgagccttagctctgatttgattttttcaatggcaaaagt
ctgtgtatttcaacctaagtgacttcagttataaaaacacatttgaatca
aatatattctatcgagctacatacactataataacgaggaagagatagaa
atgttaacaaaaatttacaaagcacatataattgtctttcaaggataaat
gttaaacctttcacactttattttgtgtgatagttattaaccacatttgg
ttatagattcacctttatattggaataggctcaatagcatctactttaaa
aatgaaagttgcccttaaataatatctaaggggtgactatttatttcatt
taaacacttccagggattgacaattttttattctactttaatctaaaaac
atcataagtagcgatctttattaatatggaaaatttagctttgtagactt
ataataagctttcaaatatttgaaatcagatttctcctcttatgattttt
taaataaaatgccgactttcctgaattgatctcaggcttgaagctgtttt
actattcacaactatagggggagctataatccactttcctagtcttacac
tgaggcacagaagcgattgcaacatgttgagtattgggaggacctatagt
aaaagccagaatgaaaaccgactatgtaacaatttactctgtttgtttga
gtcaatataattctgtagtatatgcatcgggaagcagataaacagttatt
tgactaagaaaacttcagtataaaaatgagtatcattaataaaagattaa
tcttccctgcaaaaaaaataaaataaaaatcaaaacaaaacactgggcca
tgaaagggaattaaaggacatcgctagggtccatgggaaacccgtatggg
atacacccactactggactgaaactttcaaagaaaacgcctcctttccag
aactcaagcacagcctttgttaaagaagttaacacagattcactgaacat
agaagagattctgtgtttctagctgcatatctgctgaagatgctgctaga
tactagaaatacagaatagcagaacagacacaacatggtggaccttctct
aacacaatggactttggcttaagaattgtctcatttt
gaattcccaactgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaaccatcagggaaatgcaagtcaaaacaaccctaagat
tccacttcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccactcttggag
gaattgcaagcatgtacaaccactctggaaatgagtctggaggttcctca
gaattggacatagtactaccagatgatccagcaataccactcctgggtgt
atattcagaagatgttccaactggtaagaaggacacatgctctactatgt
tcatagcagccttatttataatagccagaaattggaaagtacgcagaatt
ccttcaacagaggaatggatacagaaaatgtggtacatttacacaatgga
gtactactcagctattaaaagcaatgaattcatgaaattccaaggcaagt
gaatggatctggagggcatcatcctgagtaaggtaacccaatcacaaaag
aacttaaatgatatgcactcactgaaaagtggatattatcctagaaactt
agaatacccaagatagaatttgcaaaacacatgaaactcaaaaagaatga
agtccaaagtgtgaacactttgccccttcttagaattgggaacaaaacac
ccatggaaggagttacagagacaaagtttgtagctgagacaaaaggatgg
accatccagagactgccatatccagggatccatcccataatcagcctcca
aatgctgacaccattgtatatgctagcaagattttgctgaaaggaccctg
atatagctgtctcttgtgaggctatgccagtgcctggcaaacacagaagt
ggttttctcacagtcagctattggatgggaacacaggtccccaatggagt
tgctagaagaaagtacccaaaagctgaagggtctgcaaccctataggtga
cacgatatgaactaccactaccccagatctcatgtctctagctgcatatt
gtagcagaggatgctagtgtcatcaattgggtaagagaatacccctttga
tcctttgcaagcttaattgtcttcatgtcgagcaatgcaggtctagaaat
tgggagctggggttgttgtttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112207896_112209037
seq2: B6Ng01-248M03.b_44_1180 (reverse)

seq1  AAAATGAGACAAATCTTAGGCAAAAGTTCATTGTG-TAGAGAAGTGTCAA  49
      |||||||||||| ||||| || ||||| ||||||| |||||||| ||| |
seq2  AAAATGAGACAATTCTTAAGCCAAAGTCCATTGTGTTAGAGAAG-GTCCA  49

seq1  CAATG-TGTGTCCTGTTCCTGCTATTCTGTATTTCTAGTATCCTAGCAGG  98
      | ||| ||||| ||||| ||||||||||||||||||||||| |||||| |
seq2  CCATGTTGTGT-CTGTT-CTGCTATTCTGTATTTCTAGTAT-CTAGCA-G  95

seq1  CATCTTTCCAGCAGATTATGCAGCCTAGAAACACAGAATCCTCTCTATGT  148
      ||||||  ||||||| ||||||| ||||||||||||||||   |||||||
seq2  CATCTT--CAGCAGA-TATGCAG-CTAGAAACACAGAATCTCTTCTATGT  141

seq1  TCAGTGAAATCTGTGTTAACCTCTTTAACAAAGGCTGTGCTTGAGTTCTG  198
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGTG-AATCTGTGTTAACTTCTTTAACAAAGGCTGTGCTTGAGTTCTG  190

seq1  GAAAGGAGGCGTTTTCTTTGAAAGTTTCAGTCCAGTAGTGGGTGTATCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGCGTTTTCTTTGAAAGTTTCAGTCCAGTAGTGGGTGTATCCC  240

seq1  ATACGGGTTTCCCATGGACCCTAGCGATGTCC-TTAATTCCC-TTCATGG  296
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  ATACGGGTTTCCCATGGACCCTAGCGATGTCCTTTAATTCCCTTTCATGG  290

seq1  -CCAGTGTTTTGTTTTGATTTTTATTTTATTTTTTTTGCAGGGAAGATTA  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTTTTGTTTTGATTTTTATTTTATTTTTTTTGCAGGGAAGATTA  340

seq1  ATCTTTTATTAATGATACTCATTTTTATACTGAAGTTTTCTTAGTCAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTAATGATACTCATTTTTATACTGAAGTTTTCTTAGTCAAAT  390

seq1  AACTGTTTATCTGCTTCCCGATGCATATACTACAGAATTATATTGACTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTATCTGCTTCCCGATGCATATACTACAGAATTATATTGACTCA  440

seq1  AACAAACAGAGTAAATTGTTACATAGTCGGTTTTCATTCTGGCTTTTACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAGAGTAAATTGTTACATAGTCGGTTTTCATTCTGGCTTTTACT  490

seq1  ATAGGTCCTCCCAATACTCAACATGTTGCAATCGCTTCTGTGCCTCAGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCCTCCCAATACTCAACATGTTGCAATCGCTTCTGTGCCTCAGTG  540

seq1  TAAGACTAGGAAAGTGGATTATAGCTCCCCCTATAGTTGTGAATAGTAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAGGAAAGTGGATTATAGCTCCCCCTATAGTTGTGAATAGTAAA  590

seq1  ACAGCTTCAAGCCTGAGATCAATTCAGGAAAGTCGGCATTTTATTTAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCAAGCCTGAGATCAATTCAGGAAAGTCGGCATTTTATTTAAAA  640

seq1  AATCATAAGAGGAGAAATCTGATTTCAAATATTTGAAAGCTTATTATAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAGAGGAGAAATCTGATTTCAAATATTTGAAAGCTTATTATAAG  690

seq1  TCTACAAAGCTAAATTTTCCATATTAATAAAGATCGCTACTTATGATGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGCTAAATTTTCCATATTAATAAAGATCGCTACTTATGATGTT  740

seq1  TTTAGATTAAAGTAGAATAAAAAATTGTCAATCCCTGGAAGTGTTTAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTAAAGTAGAATAAAAAATTGTCAATCCCTGGAAGTGTTTAAAT  790

seq1  GAAATAAATAGTCACCCCTTAGATATTATTTAAGGGCAACTTTCATTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAGTCACCCCTTAGATATTATTTAAGGGCAACTTTCATTTTT  840

seq1  AAAGTAGATGCTATTGAGCCTATTCCAATATAAAGGTGAATCTATAACCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGATGCTATTGAGCCTATTCCAATATAAAGGTGAATCTATAACCA  890

seq1  AATGTGGTTAATAACTATCACACAAAATAAAGTGTGAAAGGTTTAACATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTTAATAACTATCACACAAAATAAAGTGTGAAAGGTTTAACATT  940

seq1  TATCCTTGAAAGACAATTATATGTGCTTTGTAAATTTTTGTTAACATTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTGAAAGACAATTATATGTGCTTTGTAAATTTTTGTTAACATTTC  990

seq1  TATCTCTTCCTCGTTATTATAGTGTATGTAGCTCGATAGAATATATTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCCTCGTTATTATAGTGTATGTAGCTCGATAGAATATATTTGA  1040

seq1  TTCAAATGTGTTTTTATAACTGAAGTCACTTAGGTTGAAATACACAGACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTGTTTTTATAACTGAAGTCACTTAGGTTGAAATACACAGACT  1090

seq1  TTTGCCATTGAAAAAATCAAATCAGAGCTAAGGCTCACGTAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTGAAAAAATCAAATCAGAGCTAAGGCTCACGTAGAATTC  1137