BAC Information

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BAC

Clone NameB6Ng01-250F13
Chromosome14 (Build37)1 (Build37)
Map Location 79,944,931 - 79,945,457168,054,564 - 168,055,727
singlet/doubletsingletsinglet
Overlap geneElf1
Upstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, LOC668560
Downstream geneSugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250F13.bB6Ng01-250F13.g
ACCGA057919GA057920
length9261,152
definitionB6Ng01-250F13.b B6Ng01-250F13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,944,931 - 79,945,457)(168,054,564 - 168,055,727)
sequence
gaattcatttggcttctcttgtaagactaaaacaataaaatctctcagaa
tatgtttgtctctagggtatcttaaagtgggcatacttttttttcttttt
attagatattttctaattttatttacatttcaaatgttaaccccttccct
agtttcccctccaaaaatcccctatcccctccccttgccccctgcttacc
aacccacccactcccaattcctggccccggacatagaaccttcacaggac
caagggcctctcctcccattgatgaccgactaggccatcctcagctacat
atgcagttagagccatgagtcccaccatgtgttttctttgattggtggtt
tagcaccatggagctctggggatactggtgagttcatattgttgttcctc
ctatggggctgcaaaccccttcagctccttgggtactttttctagctcct
tctttggggaccctatgctccgtccaatggatgactgtgagcatccactt
ctgtatttgccaggcactggcagagcctctcaggagacagctatatcaga
ctcctgtcagcaagctcttgttggcatccacaacagtgtctgttttggta
gttgtttatgggatggatccccaggtggggcagtctctggatggtccttc
cttcagtctctgctctgaactttgtataactccttccatgggtattttgt
tccccctttctaagaaggatcaaagtatccacactttggtcttccttctt
cttgagtttcatatgttttgtgaattgtatcttgaatctttccatttcta
aaggacaggtttactggatatagtattcttggtttttgtcttgtcatgtt
ttgttttgttttgttctttaaaacattgaatattgttattttactcttct
ggattgctaattttcttgttgagaag
gaattctacatccgcgatcttcaggcagcaggaagaaagagcaactctgg
gcctggtttgagcttttgaaacctcaaagcccacccccagggacacactt
cctgcagcaagaccacacctaaaaatccctctctagtaccactcccggat
acccaagcattcaaacggtgaatctacagaagcagttcttattcaaacca
cattccccagggtgtggatagggagtggcagtcttgtgtagaccaaacag
aggagtctttttcattcagataaactccggggcaggtccttgagcaacac
agtcgggagcagagaacccctactatcttccagttcactagagaaacgtt
gccttttccagtcactgtgctcatcagcatcaagataaaaaggagtagaa
ccaagctgttccctgggcggagtttcctcagaaaaaaagagacacttccc
ttgtgttcatagtccaccagctggaactctgcaaggtcctacttccttgc
aaaggacaatagatcccaggtttcagggcccagggagaaggggaagtaag
tttgttgatacatagcagcattggccatgttgtactcctccaggcagtct
acccacgtcagcctttgtgcccacacagaacacttttattctcagaccca
aatgtatcagctcacagtctcaccaggatgatgggtaggaaagtttccat
cctatgaaaggagaggaagatggagccgtcctgctactggtgaacatggc
tactctagaaatgaggaaatctagtctaaccaggacatgtctcttgagag
gatcgctcttatttgccacttcccttggcctctcggtctgcagaggcctg
tgttcatttgtcttctactgccacttgtaaagtgggtgggaaagtgggac
ttccctgaaggttgaacggcctctgcaggttgtatcttgctcatggaaat
cgagcacataccacccaagttcacttcttcaaaacttagtagactgtgat
cttcagtaatgcaggacagccagcaccccatgtcaccctgtttgtgtctt
ctctcgcaacctaatgatcaattatctgatgactgctgaactagacttag
gcagagtctagaaccggttgttagttggcaggtactactgaaactgctgc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79944931_79945457
seq2: B6Ng01-250F13.b_131_452 (reverse)

seq1  GCCCCATAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCC  50
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  GCCCCATAGGAGGAACAACAATATGAACTCACCAGTATCCCCAGAGCTCC  50

seq1  CAGGGACTAAA-CACCAACCAAAGAGTACATATGGTGGGACTCATGGCTC  99
        ||  ||||| |||||| ||||||  ||| |||||||||||||||||||
seq2  ATGGTGCTAAACCACCAATCAAAGAAAACACATGGTGGGACTCATGGCTC  100

seq1  CAGCTGCATATGGAGCAGAGAATGGCCTAGTCGGTCATCAGTGGGAGGAG  149
       | ||||||||| ||| ||| ||||||||||||||||||| |||||||||
seq2  TAACTGCATATGTAGCTGAGGATGGCCTAGTCGGTCATCAATGGGAGGAG  150

seq1  AGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTATAGGGGAATGCCAG  199
      ||||||||||||||||||||| |||||| ||       ||||        
seq2  AGGCCCTTGGTCCTGTGAAGGTTCTATGTCC-------GGGG--------  185

seq1  GACCAGGAAGTGGGAGTGTGGGTGGGTTGGTGAGCAGGGG--AAGGGGAG  247
        ||||||| |||||  |||||||||||||| ||||||||  ||||||||
seq2  --CCAGGAATTGGGA--GTGGGTGGGTTGGTAAGCAGGGGGCAAGGGGAG  231

seq1  AAGGGATAGGGGATTTTCGGAGGGGAGACCAGGAAAGGGTATATCATTTG  297
        ||||||||||||||| |||||||| || ||| |||||  || ||||||
seq2  --GGGATAGGGGATTTTTGGAGGGGAAACTAGGGAAGGGGTTAACATTTG  279

seq1  AAATAT-AATAA----AGAAAATATCACCGGGTGGTGGTGGTACACACCT  342
      |||| | |||||    ||||||||||            |  || | |   
seq2  AAATGTAAATAAAATTAGAAAATATC------------TAATAAAAAGAA  317

seq1  TTAATCCCAGCATTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGG  392
        ||                                              
seq2  AAAAA---------------------------------------------  322

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGA  442
                                                        
seq2  --------------------------------------------------  322

seq1  AACCCTGTCTCAAAACAACAACAACAACAACAACAAAAAACCAAAAAAAA  492
                                                        
seq2  --------------------------------------------------  322

seq1  AGAAGAAAAGAAAATATCTAATAAAAAGAAAAAAA  527
                                         
seq2  -----------------------------------  322

seq1: chr1_168054564_168055727
seq2: B6Ng01-250F13.g_67_1218 (reverse)

seq1  TTGCAGCAGTTTCCAGTAGTTACGCTGCAAACT-ACAACACGTTCTAGAC  49
      |||||||||||| |||||| ||| |||| |||| |||||  |||||||||
seq2  TTGCAGCAGTTT-CAGTAG-TAC-CTGCCAACTAACAACCGGTTCTAGAC  47

seq1  TTCCTGCCTTAAAGTCTAGTTTCAGGCAGTCATTCAGATAA-TGATCATT  98
      |  ||||||  |||||||| |||| ||||||| |||||||| ||||||||
seq2  T--CTGCCT--AAGTCTAG-TTCA-GCAGTCA-TCAGATAATTGATCATT  90

seq1  AGGTTGCCGAGGAAGAAAGACACAAACAGGGTTGACATGGGGTGCTGGCT  148
      |||||| ||||  || ||||||||||||||| ||||||||||||||||||
seq2  AGGTTG-CGAG--AG-AAGACACAAACAGGG-TGACATGGGGTGCTGGCT  135

seq1  GTCCTGCA-TACTG-AGATCACAGTCTACTAAGTTTTTGAAG-AGTGAAC  195
      |||||||| ||||| |||||||||||||||||| |||||||| |||||||
seq2  GTCCTGCATTACTGAAGATCACAGTCTACTAAG-TTTTGAAGAAGTGAAC  184

seq1  TTTGGGTGGTATGTGCTCCGATTTTCCATGAGCAAGATACAACCTGCAGA  245
       |||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  -TTGGGTGGTATGTGCT-CGA-TTTCCATGAGCAAGATACAACCTGCAGA  231

seq1  GGCCGTTCAACCTTCAGGGAAGTCCCACTTTCCCACCCACTTTACAAGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTTCAACCTTCAGGGAAGTCCCACTTTCCCACCCACTTTACAAGTG  281

seq1  GCAGTAGAAGAC-AATGAACACAGGCCTCTGCAGACCGAGAGGCCAAGGG  344
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAAGACAAATGAACACAGGCCTCTGCAGACCGAGAGGCCAAGGG  331

seq1  AAGTGGCAAATAAGAGCGATCCTCTCAAGAGACATGTCCTGGTTAGACTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAAATAAGAGCGATCCTCTCAAGAGACATGTCCTGGTTAGACTA  381

seq1  GATTTCCTCATTTCTAGAGTAGCCATGTTCACCAGTAGCAGGACGGCTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTCATTTCTAGAGTAGCCATGTTCACCAGTAGCAGGACGGCTCC  431

seq1  ATCTTCCTCTCCTTTCATAGGATGGAAACTTTCCTACCCATCATCCTGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTCCTTTCATAGGATGGAAACTTTCCTACCCATCATCCTGGT  481

seq1  GAGACTGTGAGCTGATACATTTGGGTCTGAGAATAAAAGTGTTCTGTGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTGAGCTGATACATTTGGGTCTGAGAATAAAAGTGTTCTGTGTG  531

seq1  GGCACAAAGGCTGACGTGGGTAGACTGCCTGGAGGAGTACAACATGGCCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAGGCTGACGTGGGTAGACTGCCTGGAGGAGTACAACATGGCCA  581

seq1  ATGCTGCTATGTATCAACAAACTTACTTCCCCTTCTCCCTGGGCCCTGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTATGTATCAACAAACTTACTTCCCCTTCTCCCTGGGCCCTGAA  631

seq1  ACCTGGGATCTATTGTCCTTTGCAAGGAAGTAGGACCTTGCAGAGTTCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGATCTATTGTCCTTTGCAAGGAAGTAGGACCTTGCAGAGTTCCA  681

seq1  GCTGGTGGACTATGAACACAAGGGAAGTGTCTCTTTTTTTCTGAGGAAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGACTATGAACACAAGGGAAGTGTCTCTTTTTTTCTGAGGAAAC  731

seq1  TCCGCCCAGGGAACAGCTTGGTTCTACTCCTTTTTATCTTGATGCTGATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCAGGGAACAGCTTGGTTCTACTCCTTTTTATCTTGATGCTGATG  781

seq1  AGCACAGTGACTGGAAAAGGCAACGTTTCTCTAGTGAACTGGAAGATAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTGACTGGAAAAGGCAACGTTTCTCTAGTGAACTGGAAGATAGT  831

seq1  AGGGGTTCTCTGCTCCCGACTGTGTTGCTCAAGGACCTGCCCCGGAGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTCTCTGCTCCCGACTGTGTTGCTCAAGGACCTGCCCCGGAGTTT  881

seq1  ATCTGAATGAAAAAGACTCCTCTGTTTGGTCTACACAAGACTGCCACTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATGAAAAAGACTCCTCTGTTTGGTCTACACAAGACTGCCACTCC  931

seq1  CTATCCACACCCTGGGGAATGTGGTTTGAATAAGAACTGCTTCTGTAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACACCCTGGGGAATGTGGTTTGAATAAGAACTGCTTCTGTAGAT  981

seq1  TCACCGTTTGAATGCTTGGGTATCCGGGAGTGGTACTAGAGAGGGATTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGTTTGAATGCTTGGGTATCCGGGAGTGGTACTAGAGAGGGATTTT  1031

seq1  TAGGTGTGGTCTTGCTGCAGGAAGTGTGTCCCTGGGGGTGGGCTTTGAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTGGTCTTGCTGCAGGAAGTGTGTCCCTGGGGGTGGGCTTTGAGG  1081

seq1  TTTCAAAAGCTCAAACCAGGCCCAGAGTTGCTCTTTCTTCCTGCTGCCTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGCTCAAACCAGGCCCAGAGTTGCTCTTTCTTCCTGCTGCCTG  1131

seq1  AAGATC-CGGATGTAGAATTC  1164
      |||||| ||||||||||||||
seq2  AAGATCGCGGATGTAGAATTC  1152