BAC Information

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BAC

Clone NameB6Ng01-250N08
Chromosome14 (Build37)
Map Location 23,960,930 - 24,101,536
singlet/doubletdoublet
Overlap genenone
Upstream gene1700112E06Rik, EG435392, LOC665068
Downstream geneKcnma1, LOC620499, Dlg5, LOC100039335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N08.bB6Ng01-250N08.g
ACCGA058266GA058267
length1,0891,126
definitionB6Ng01-250N08.b B6Ng01-250N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,100,496 - 24,101,536)(23,960,930 - 23,962,051)
sequence
gaattcaaaataaatttaatgttcatcattaggagatcattgtaactgaa
gtcaatttctaaagaactggtaaataaattgaatgaatacttttttttca
tagtaacctgattgtagtagaagagagcatgtcttcttatagagtattcc
agctcctcaattagaagagagggcgaggaccaggatgcaccatcttgcag
cactgtgtgaattatgaattccaagactgagcagcaacttccaaagtcac
aaggaactagagaatcacaaattgtgatggaaaaacacaacttaagcctt
tagatttaactagcaatatattgggacatagctaataatatgaaggaggt
aattagcaaaaattactctgtgagaaattctataggataatatttatata
tatatgcctatggggacattcttattcaagtactacaatattgattaaag
tacactattaatacaatatatatatatatatatatatataaaatctccag
tgaaagttaagggagaaaagatgaaaagcacatgttgactacaaagatgt
gtgacataccaactaatttcagtatgtgaatcttgaacaattcttgtctt
agtgttctattgatgtgaagagacaccgtgactcttaaaaaagaaagcac
ttaattggagacttgcttacattttcagaggtttagttttgtaattatta
tggcagagcacgtggcaatagtcagttatggtgacagaaaagtagctaaa
tttacctgttgatctgcagactgtaatagtatctttttattcaccctcat
gtgattgtcatctcagaggcttgctgcctccatcttctaaccgagggcct
agtactggaaagcttctagccttcaataaagttctaatctaaggtttaga
aatgtttttcaccctctgaagactttgcttgctgactaagctcatccttt
tccactttcttttctgaactctgggctgggttggttcacctccgctgttt
tttggcctcaatactctttctctcaaaccggattcattccggcctccctc
tctgcctctgagttttttgccttacttgggcctcgaact
gaattctatgaagccagaaagagccacctagatgacctcttgaagagtgg
tctctcacagagttccttacagtgggggttgcacgggctaatcttgggaa
atgtatctacattcttgttcctagccgaacatcccttcaactaaaatcaa
cagaaatgtaggaatggattctgagagagtgtaactactacaatgagccc
tcacaacagggatacacaagccttgggtgtgaacccaaaggctcttccag
gccatggctcagactcagcaaagtagaaaatcccttgaagcttctcagta
gtggatcaaaggagactctaggggtgctccagtggggagacccctttaga
gaaaacaatgtaagatgatcagtgattttacctaaaataacagaaaccat
gcctctgcctgggacaagaatgcagcttatctgaaagacagagcaaatga
caggaagtctgtcttccagctgcctagatatttcacattaggtctggatc
agatgaggaggaaaggactcagtttcccacagagatactgacttagtagg
catttctggcaacagctccttccaaggcatctttgttattatttgacttt
tcagtgtcttaaagaccaggttttgtggttgataataagtctaaggcttt
ggttgacattaagtcaattttgacaatatggctgattcccatttgtgaat
gaaattaccatttattgagcattgttttcatgtgaaagcaaatacaattc
agttttttttttccctttcaggtatgcacagtgtagaagggacatatgac
tataggaacaagacattggaatatcagaatatgactcactcagaaaatga
cctggagaaccagaagaaaaagaccaacttgccactataaaactgggaaa
gattcatgaatgaggaaataactggtataagattcaaatagaaaagtgat
agggagaagggaaatatatcacagttctactcaaatttcagagtctctaa
gaatgaataaagcatatgatttatattagctctagcattgattatcatga
agaaataaatctgtacacttagactctttctggactggtcatcacttgaa
ttgtggtttgtgaacacacagccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24100496_24101536
seq2: B6Ng01-250N08.b_70_1136 (reverse)

seq1  AGTTCGAGG-CCAAGTAGAGCAAAAAACTCAGAGGCAGAGAGAGAAGCCA  49
      ||||||||| |||||||  ||||||||||||||||||||||| || ||| 
seq2  AGTTCGAGGCCCAAGTAAGGCAAAAAACTCAGAGGCAGAGAGGGAGGCCG  50

seq1  GATTGAATCCGTTTGGAG---AAGAGT-TTGAGCC---AAAACAGCTGAG  92
      || |||||||| || |||   |||||| ||||| |   |||||||| |||
seq2  GAATGAATCCGGTTTGAGAGAAAGAGTATTGAGGCCAAAAAACAGCGGAG  100

seq1  TTGAACCAA-CCAG-CCAGAGTTCAGAAA--GAAGTGG-AAAGGATGAGC  137
       |||||||| |||| ||||||||||||||   |||||| |||||||||||
seq2  GTGAACCAACCCAGCCCAGAGTTCAGAAAAGAAAGTGGAAAAGGATGAGC  150

seq1  TTAGTCAGC-AGC-AAGTC-TCAGAGGTTG-AAAACA-TTCTAAACC-TA  181
      ||||||||| ||| ||||| ||||||| || |||||| ||||||||| ||
seq2  TTAGTCAGCAAGCAAAGTCTTCAGAGGGTGAAAAACATTTCTAAACCTTA  200

seq1  GATTAG-ACTTTATTG-AGGCTAGAAGC-TTCCAGTACTAGG-CCTCGGT  227
      |||||| ||||||||| ||||||||||| ||||||||||||| |||||||
seq2  GATTAGAACTTTATTGAAGGCTAGAAGCTTTCCAGTACTAGGCCCTCGGT  250

seq1  TAGAAGATGGAGGCAGCAAGCCTCTGAGATGACAATCACATGA-GGTGAA  276
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGAAGATGGAGGCAGCAAGCCTCTGAGATGACAATCACATGAGGGTGAA  300

seq1  T-AAAAGATACTATTACAGTCTGCAGATCAACAGGTAAATTTAGCTACTT  325
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATACTATTACAGTCTGCAGATCAACAGGTAAATTTAGCTACTT  350

seq1  TTCTGTCACCATAACTGACTATTGCCACGTGCTCTGCCATAATAATTAC-  374
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGTCACCATAACTGACTATTGCCACGTGCTCTGCCATAATAATTACA  400

seq1  AAACTAAACCTCTGAAAATGTAAGCAAGTCTCCAATTAAGTGCTTTCTTT  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAACCTCTGAAAATGTAAGCAAGTCTCCAATTAAGTGCTTTCTTT  450

seq1  TTTAAGAGTCACGGTGTCTCTTCACATCAATAGAACACTAAGACAAGAAT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGTCACGGTGTCTCTTCACATCAATAGAACACTAAGACAAGAAT  500

seq1  TGTTCAAGATTCACATACTGAAATTAGTTGGTATGTCACACATCTTTGTA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAGATTCACATACTGAAATTAGTTGGTATGTCACACATCTTTGTA  550

seq1  GTCAACATGTGCTTTTCATCTTTTCTCCCTTAACTTTCACTGGAGATTTT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACATGTGCTTTTCATCTTTTCTCCCTTAACTTTCACTGGAGATTTT  600

seq1  ATATATATATATATATATATATATTGTATTAATAGTGTACTTTAATCAAT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATTGTATTAATAGTGTACTTTAATCAAT  650

seq1  ATTGTAGTACTTGAATAAGAATGTCCCCATAGGCATATATATATAAATAT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTACTTGAATAAGAATGTCCCCATAGGCATATATATATAAATAT  700

seq1  TATCCTATAGAATTTCTCACAGAGTAATTTTTGCTAATTACCTCCTTCAT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATAGAATTTCTCACAGAGTAATTTTTGCTAATTACCTCCTTCAT  750

seq1  ATTATTAGCTATGTCCCAATATATTGCTAGTTAAATCTAAAGGCTTAAGT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGCTATGTCCCAATATATTGCTAGTTAAATCTAAAGGCTTAAGT  800

seq1  TGTGTTTTTCCATCACAATTTGTGATTCTCTAGTTCCTTGTGACTTTGGA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTCCATCACAATTTGTGATTCTCTAGTTCCTTGTGACTTTGGA  850

seq1  AGTTGCTGCTCAGTCTTGGAATTCATAATTCACACAGTGCTGCAAGATGG  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGCTCAGTCTTGGAATTCATAATTCACACAGTGCTGCAAGATGG  900

seq1  TGCATCCTGGTCCTCGCCCTCTCTTCTAATTGAGGAGCTGGAATACTCTA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTGGTCCTCGCCCTCTCTTCTAATTGAGGAGCTGGAATACTCTA  950

seq1  TAAGAAGACATGCTCTCTTCTACTACAATCAGGTTACTATGAAAAAAAAG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGACATGCTCTCTTCTACTACAATCAGGTTACTATGAAAAAAAAG  1000

seq1  TATTCATTCAATTTATTTACCAGTTCTTTAGAAATTGACTTCAGTTACAA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCAATTTATTTACCAGTTCTTTAGAAATTGACTTCAGTTACAA  1050

seq1  TGATCTCCTAATGATGA  1041
      |||||||||||||||||
seq2  TGATCTCCTAATGATGA  1067

seq1: chr14_23960930_23962051
seq2: B6Ng01-250N08.g_70_1195

seq1  GAATTCTATGAAGCCAGAAAGAGCCACCTAGATGACCTCTTGAAGAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAGCCAGAAAGAGCCACCTAGATGACCTCTTGAAGAGTGG  50

seq1  TCTCTCACAGAGTTCCTTACAGTGGGGGTTGCACGGGCTAATCTTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCACAGAGTTCCTTACAGTGGGGGTTGCACGGGCTAATCTTGGGAA  100

seq1  ATGTATCTACATTCTTGTTCCTAGCCGAACATCCCTTCAACTAAAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTACATTCTTGTTCCTAGCCGAACATCCCTTCAACTAAAATCAA  150

seq1  CAGAAATGTAGGAATGGATTCTGAGAGAGTGTAACTACTACAATGAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTAGGAATGGATTCTGAGAGAGTGTAACTACTACAATGAGCCC  200

seq1  TCACAACAGGGATACACAAGCCTTGGGTGTGAACCCAAAGGCTCTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGGGATACACAAGCCTTGGGTGTGAACCCAAAGGCTCTTCCAG  250

seq1  GCCATGGCTCAGACTCAGCAAAGTAGAAAATCCCTTGAAGCTTCTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCTCAGACTCAGCAAAGTAGAAAATCCCTTGAAGCTTCTCAGTA  300

seq1  GTGGATCAAAGGAGACTCTAGGGGTGCTCCAGTGGGGAGACCCCTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCAAAGGAGACTCTAGGGGTGCTCCAGTGGGGAGACCCCTTTAGA  350

seq1  GAAAACAATGTAAGATGATCAGTGATTTTACCTAAAATAACAGAAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATGTAAGATGATCAGTGATTTTACCTAAAATAACAGAAACCAT  400

seq1  GCCTCTGCCTGGGACAAGAATGCAGCTTATCTGAAAGACAGAGCAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTGGGACAAGAATGCAGCTTATCTGAAAGACAGAGCAAATGA  450

seq1  CAGGAAGTCTGTCTTCCAGCTGCCTAGATATTTCACATTAGGTCTGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCTGTCTTCCAGCTGCCTAGATATTTCACATTAGGTCTGGATC  500

seq1  AGATGAGGAGGAAAGGACTCAGTTTCCCACAGAGATACTGACTTAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGAGGAAAGGACTCAGTTTCCCACAGAGATACTGACTTAGTAGG  550

seq1  CATTTCTGGCAACAGCTCCTTCCAAGGCATCTTTGTTATTATTTGACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGGCAACAGCTCCTTCCAAGGCATCTTTGTTATTATTTGACTTT  600

seq1  TCAGTGTCTTAAAGACCAGGTTTTGTGGTTGATAATAAGTCTAAGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTTAAAGACCAGGTTTTGTGGTTGATAATAAGTCTAAGGCTTT  650

seq1  GGTTGACATTAAGTCAATTTTGACAATATGGCTGATTCCCATTTGTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACATTAAGTCAATTTTGACAATATGGCTGATTCCCATTTGTGAAT  700

seq1  GAAATTACCATTTATTGAGCATTGTTTTCATGTGAAAGCAAATACAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACCATTTATTGAGCATTGTTTTCATGTGAAAGCAAATACAATTC  750

seq1  AGTTTTTTTTTTCCCTTTCAGGTATGCACAGTGTAGAAGGGACATATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTTTTTCCCTTTCAGGTATGCACAGTGTAGAAGGGACATATGAC  800

seq1  TATAGGAACAAGACATTGGAATATCAGAATATGACTCACTCAG-AAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATAGGAACAAGACATTGGAATATCAGAATATGACTCACTCAGAAAATGA  850

seq1  CCTGGAGAACCAGAAGAAAAAGACCAACTTGCCACTATAAAACT-GGAAA  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTGGAGAACCAGAAGAAAAAGACCAACTTGCCACTATAAAACTGGGAAA  900

seq1  GATTCATGAATGAGGAAATAACTGGTATAAGATTCAAATAGAAAAGTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATGAATGAGGAAATAACTGGTATAAGATTCAAATAGAAAAGTGAT  950

seq1  AGGGAG-AGGGAAATATATCACAGTTCTACTCAAATTTCAGAGTCTCTAA  997
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGGGAAATATATCACAGTTCTACTCAAATTTCAGAGTCTCTAA  1000

seq1  GAATGAATAAAAGCATATGA-TTATA-TAGCTCTAGCATTGATATTCATG  1045
      |||||||| ||||||||||| ||||| ||||||||||||||||  |||||
seq2  GAATGAAT-AAAGCATATGATTTATATTAGCTCTAGCATTGATTATCATG  1049

seq1  AGAAAATAAATCTGTACACTTAAGACTCTTTCTTGACTTGGGTCATCAC-  1094
      |  |||||||||||||||||| ||||||||||| ||||  ||||||||| 
seq2  AAGAAATAAATCTGTACACTT-AGACTCTTTCTGGACT--GGTCATCACT  1096

seq1  TGAATTGT-GTTTGTG-ACACACAGCCTTT  1122
      |||||||| ||||||| |||||||||||||
seq2  TGAATTGTGGTTTGTGAACACACAGCCTTT  1126