BAC Information

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BAC

Clone NameB6Ng01-250O07
Chromosome14 (Build37)
Map Location 98,253,098 - 98,402,860
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716, LOC100043787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250O07.bB6Ng01-250O07.g
ACCGA058311GA058312
length1,1631,193
definitionB6Ng01-250O07.b B6Ng01-250O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,253,098 - 98,254,273)(98,401,676 - 98,402,860)
sequence
gaattcatcggaaaacataaatactgggtcacatagatcaataaaatgga
aatactatattaattttaattttacttttcttgcgtccaagaggagacct
aaatccattaaatgaggtcgaatttgtaacaaagaaacttctgaaagtga
atgaatgaattacttattctttttggtcaaaaaggtcagaataaaattta
ggtcctgacagaaaacttattgcaagacaaacacaaaaaacttgagttta
tttcccaaatcccgcactaaaaaagctggtgtgctaaaactttttatatt
ctcagctctagttaggtagagacaggcatgtgaatctctgaggttcagtg
gtcactagtttagaatacttccaggaaagaaagagaaattgtctcaaaaa
tggagactgggagacaacatttaaataatgacacccaagtttgtcctttg
gcctccacaaaaaggaacagacacacaatttcacataagatatgtgtaaa
tacaaacacaaagaaattgcagaaacaatttgcaatgtagtttcaaatat
atctcaaattgtcaaattgtaattctgaatgcccatttataggtattcta
atgcatatttcaaaccccctagaagagttgatatgccttaaaggggaaga
tagaagggtaaggctttaaaggatacaaatccttacaaagttatgcacct
ttaaagaattaaagcttattagatactttagaaaacacagggagataatg
gtgactggaaatggctaggcaaaaatccaacccatgcccaaataactgat
atcacaaagaaatatgcacagaatttagaagtatatgcagtaattagatc
catctgctacccaatgcaggtactacaggaccctgattcaagactaatta
gactcatttgttattaccagtacatatttgcattcattaatgtgctaaaa
tccttgaaactatgctctcttaagtggttaaacatgttcattgtaatctt
gttatataataattggcttagcaatcttttcctttatattctagtacaaa
ggtaaactttatcaggccaagctaaattatccataattcccatatagcag
aaacaaataatgagcttgattgtaccaagaaattgctttgccattgcttc
attcatctactgt

gaattccaggtcctagaatacagtattcactaccttctctgcctactttt
cgtgttttcgtcttgttttcatgagtcatgttactgtatttaaaacatga
agaatgccaattaaaactatgtgacatataaactgtggtctacttggagt
aataaaataataaaataactgagcaataccattgtcttatttcctcatga
tcatgatttctggatctacatttgataaatgttttcctcagctatatata
tttagctgaggaaaaaatttatatatatgtatgtatatatccacatagtc
acacatactaaaatttctaaataagttaggaatttatctgtaattaatct
gaaacaaatatgtgttatatttatattagcaaaatatactcactattact
tccaggaacctgtgaagtatatacgtagaagtcatgactcttttttataa
acatttatcctgagttacaaggatcaatgacattgcctcccgaaaaccca
taattataggtctcttggcatggcaggagacatgtgcaaaagaactgatg
tcttctaaaagcaccaacaaatgctaagggaatgatcttaaccatcgtga
tagaaaatggtatatttaaactgtcttatatcagcatgatctccataaca
attatgtgtgtcacaaacataagccaagtaaatatgataatttctgtgga
aaatattataaatcattttatattgtaggggagtataaaggctatccctt
gttgattcatgttgtatttgggtcattatagcatcagtaactgatattat
atattataattttcttagatttaacttattaaatcccttttcacatacta
gcttacttaaactatatttccaagcatatctcataaaccatttgtataga
aaacatgatgattttcagaacctgactatattggttcgatggtgatctca
taataaattaaagttataaaccaatttcctggagagttttaacaacagta
tttgcttgtgtccaccttaaataagacttcaacatctgggaagagtcaga
gtgtaccttgccatgttgcaactcactttaggtccatttttgtgttcatc
agcaatggtgaatgcctaatgagaaatttactatttgtgctgtttttgcc
acacagccctggcctgtacaacgaaccttagaatctagtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_98253098_98254273
seq2: B6Ng01-250O07.b_49_1211

seq1  GAATTCATCGGAAAACATAAATACTGGGTCACATAGATCAATAAAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGGAAAACATAAATACTGGGTCACATAGATCAATAAAATGGA  50

seq1  AATACTATATTAATTTTAATTTTACTTTTCTTGCGTCCAAGAGGAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATATTAATTTTAATTTTACTTTTCTTGCGTCCAAGAGGAGACCT  100

seq1  AAATCCATTAAATGAGGTCGAATTTGTAACAAAGAAACTTCTGAAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATTAAATGAGGTCGAATTTGTAACAAAGAAACTTCTGAAAGTGA  150

seq1  ATGAATGAATTACTTATTCTTTTTGGTCAAAAAGGTCAGAATAAAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATTACTTATTCTTTTTGGTCAAAAAGGTCAGAATAAAATTTA  200

seq1  GGTCCTGACAGAAAACTTATTGCAAGACAAACACAAAAAACTTGAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGACAGAAAACTTATTGCAAGACAAACACAAAAAACTTGAGTTTA  250

seq1  TTTCCCAAATCCCGCACTAAAAAAGCTGGTGTGCTAAAACTTTTTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAATCCCGCACTAAAAAAGCTGGTGTGCTAAAACTTTTTATATT  300

seq1  CTCAGCTCTAGTTAGGTAGAGACAGGCATGTGAATCTCTGAGGTTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCTAGTTAGGTAGAGACAGGCATGTGAATCTCTGAGGTTCAGTG  350

seq1  GTCACTAGTTTAGAATACTTCCAGGAAAGAAAGAGAAATTGTCTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTAGTTTAGAATACTTCCAGGAAAGAAAGAGAAATTGTCTCAAAAA  400

seq1  TGGAGACTGGGAGACAACATTTAAATAATGACACCCAAGTTTGTCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTGGGAGACAACATTTAAATAATGACACCCAAGTTTGTCCTTTG  450

seq1  GCCTCCACAAAAAGGAACAGACACACAATTTCACATAAGATATGTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACAAAAAGGAACAGACACACAATTTCACATAAGATATGTGTAAA  500

seq1  TACAAACACAAAGAAATTGCAGAAACAATTTGCAATGTAGTTTCAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACAAAGAAATTGCAGAAACAATTTGCAATGTAGTTTCAAATAT  550

seq1  ATCTCAAATTGTCAAATTGTAATTCTGAATGCCCATTTATAGGTATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATTGTCAAATTGTAATTCTGAATGCCCATTTATAGGTATTCTA  600

seq1  ATGCATATTTCAAACCCCCTAGAAGAGTTGATATGCCTTAAAGGGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTTCAAACCCCCTAGAAGAGTTGATATGCCTTAAAGGGGAAGA  650

seq1  TAGAAGGGTAAGGCTTTAAAGGATACAAATCCTTACAAAGTTATGCACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGTAAGGCTTTAAAGGATACAAATCCTTACAAAGTTATGCACCT  700

seq1  TTAAAGAATTAAAGCTTATTAGATACTTTAGAAAACACAGGGAGATAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATTAAAGCTTATTAGATACTTTAGAAAACACAGGGAGATAATG  750

seq1  GTGACTGGAAATGGCTAGGCAAAAATCCAACCCATGCCCAAATAACTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGGAAATGGCTAGGCAAAAATCCAACCCATGCCCAAATAACTGAT  800

seq1  ATCACAAAGAAATATGCACAGAATTTAGAAGTATATGCAGTAATTAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAGAAATATGCACAGAATTTAGAAGTATATGCAGTAATTAGATC  850

seq1  CATCTGCTACCCAATGCAGGTACTACAGGACCCTGATTCAAGACTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATCTGCTACCCAATGCAGGTACTACAGGACCCTGATTCAAGACT-AATT  899

seq1  AGACTCATTTGTTATTACCAGTACATATTTGCATTCAATTAATGTGCTAA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGACTCATTTGTTATTACCAGTACATATTTGCATTC-ATTAATGTGCTAA  948

seq1  AATCCTTGAAAACTATGCTCTCTTAAGTGGGTTAAACATGTTCATTGTAA  1000
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  AATCCTTG-AAACTATGCTCTCTTAAGT-GGTTAAACATGTTCATTGTAA  996

seq1  TCTTGTTTATATTAATAATTGGCTTAGCAAATCTTTT-CTTTATA-TCTA  1048
      ||||| ||||| |||||||||||||||| |||||||| ||||||| ||||
seq2  TCTTG-TTATA-TAATAATTGGCTTAGC-AATCTTTTCCTTTATATTCTA  1043

seq1  GTACAAAGGTAAACTTTATCAAGCCCAAGCTAAATTAT-CATAAATTCCA  1097
      |||||||||||||||||||| || |||||||||||||| ||||| | |||
seq2  GTACAAAGGTAAACTTTATC-AGGCCAAGCTAAATTATCCATAATTCCCA  1092

seq1  TATTAGCAGAAACCAAATTAATGAGCTTTGATTGTACCAAGAAAATTGCC  1147
      || ||||||||||  || |||||||| |||||||||||||| |||||| |
seq2  TA-TAGCAGAAAC--AAATAATGAGC-TTGATTGTACCAAG-AAATTG-C  1136

seq1  TTTGCCAATTGCTTCATTTCATCTACTGT  1176
      |||||| ||||||||| ||||||||||||
seq2  TTTGCC-ATTGCTTCA-TTCATCTACTGT  1163


seq1: chr14_98401676_98402860
seq2: B6Ng01-250O07.g_69_1261 (reverse)

seq1  AAAGACATGATTCTATGGTTCTGTTGTAACCAGGCCAGG---CTGTTGCC  47
      ||||||  ||||||| ||||| ||||||  |||||||||    ||| || 
seq2  AAAGACTAGATTCTAAGGTTC-GTTGTA--CAGGCCAGGGCTGTGTGGCA  47

seq1  AAAACAGCACAATAAGTAAA--TCTCATTA-GCA-TCACCATTGCTGATG  93
      ||||||||||||  ||||||  |||||||| ||| |||||||||||||||
seq2  AAAACAGCACAAATAGTAAATTTCTCATTAGGCATTCACCATTGCTGATG  97

seq1  AACACAAAAATGGA-CTTAAGTGAGTTGCCACATTGGCAAAGTACACTCT  142
      |||||||||||||| || ||||||||||| ||| |||||| |||||||||
seq2  AACACAAAAATGGACCTAAAGTGAGTTGCAACA-TGGCAAGGTACACTCT  146

seq1  GACCTTCTTCCCAGATGTTGAAGTCTTATTT-AGGTGGAACAC-AGCAAA  190
      |||  |||||||||||||||||||||||||| |||||| |||| ||||||
seq2  GAC--TCTTCCCAGATGTTGAAGTCTTATTTAAGGTGG-ACACAAGCAAA  193

seq1  TACTGTTGTTAAAACTCTCCAGG-AATTGGTTTAT-ACTTTTATTTA-TA  237
      ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
seq2  TACTGTTGTTAAAACTCTCCAGGAAATTGGTTTATAACTTTAATTTATTA  243

seq1  TGAGATCACCATCGAACCAATATAGTCAGGTTCTGAAAATCATCATGTTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCACCATCGAACCAATATAGTCAGGTTCTGAAAATCATCATGTTT  293

seq1  TCTATAC-AATGGTTTATGAGATATGCTT-GAAATATAGTTTAAGTAAGC  335
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTATACAAATGGTTTATGAGATATGCTTGGAAATATAGTTTAAGTAAGC  343

seq1  TAGTATGTGAAAAGGGATTTAATAAGTTAAATCTAAGAAAATTATAATAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTGAAAAGGGATTTAATAAGTTAAATCTAAGAAAATTATAATAT  393

seq1  ATAATATCAGTTACTGATGCTATAATGACCCAAATACAACATGAATCAAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCAGTTACTGATGCTATAATGACCCAAATACAACATGAATCAAC  443

seq1  AAGGGATAGCCTTTATACTCCCCTACAATATAAAATGATTTATAATATTT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATAGCCTTTATACTCCCCTACAATATAAAATGATTTATAATATTT  493

seq1  TCCACAGAAATTATCATATTTACTTGGCTTATGTTTGTGACACACATAAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAAATTATCATATTTACTTGGCTTATGTTTGTGACACACATAAT  543

seq1  TGTTATGGAGATCATGCTGATATAAGACAGTTTAAATATACCATTTTCTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGAGATCATGCTGATATAAGACAGTTTAAATATACCATTTTCTA  593

seq1  TCACGATGGTTAAGATCATTCCCTTAGCATTTGTTGGTGCTTTTAGAAGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATGGTTAAGATCATTCCCTTAGCATTTGTTGGTGCTTTTAGAAGA  643

seq1  CATCAGTTCTTTTGCACATGTCTCCTGCCATGCCAAGAGACCTATAATTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTCTTTTGCACATGTCTCCTGCCATGCCAAGAGACCTATAATTA  693

seq1  TGGGTTTTCGGGAGGCAATGTCATTGATCCTTGTAACTCAGGATAAATGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCGGGAGGCAATGTCATTGATCCTTGTAACTCAGGATAAATGT  743

seq1  TTATAAAAAAGAGTCATGACTTCTACGTATATACTTCACAGGTTCCTGGA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAAAGAGTCATGACTTCTACGTATATACTTCACAGGTTCCTGGA  793

seq1  AGTAATAGTGAGTATATTTTGCTAATATAAATATAACACATATTTGTTTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAGTGAGTATATTTTGCTAATATAAATATAACACATATTTGTTTC  843

seq1  AGATTAATTACAGATAAATTCCTAACTTATTTAGAAATTTTAGTATGTGT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAATTACAGATAAATTCCTAACTTATTTAGAAATTTTAGTATGTGT  893

seq1  GACTATGTGGATATATACATACATATATATAAATTTTTTCCTCAGCTAAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTGGATATATACATACATATATATAAATTTTTTCCTCAGCTAAA  943

seq1  TATATATAGCTGAGGAAAACATTTATCAAATGTAGATCCAGAAATCATGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAGCTGAGGAAAACATTTATCAAATGTAGATCCAGAAATCATGA  993

seq1  TCATGAGGAAATAAGACAATGGTATTGCTCAGTTATTTTATTATTTTATT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGAAATAAGACAATGGTATTGCTCAGTTATTTTATTATTTTATT  1043

seq1  ACTCCAAGTAGACCACAGTTTATATGTCACATAGTTTTAATTGGCATTCT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGTAGACCACAGTTTATATGTCACATAGTTTTAATTGGCATTCT  1093

seq1  TCATGTTTTAAATACAGTAACATGACTCATGAAAACAAGACGAAAACACG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTAAATACAGTAACATGACTCATGAAAACAAGACGAAAACACG  1143

seq1  AAAAGTAGGCAGAGAAGGTAGTGAATACTGTATTCTAGGACCTGGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGGCAGAGAAGGTAGTGAATACTGTATTCTAGGACCTGGAATTC  1193


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