BAC Information

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BAC

Clone NameB6Ng01-253I18
Chromosome14 (Build37)
Map Location 113,972,203 - 114,114,770
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253I18.bB6Ng01-253I18.g
ACCGA060248GA060249
length1,0121,147
definitionB6Ng01-253I18.b B6Ng01-253I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,114,246 - 114,114,770)(113,972,203 - 113,973,365)
sequence
gaattcattccattaatccttcttctcttttttatatatttattataatt
gttattatattattataatattaacataatagacaatgtgttttgataat
atatagattatttctccatctctatctagatccaccccatttatttattt
atttatttatttatttatttatttatttattgtcgttcaagatgtttgta
ttgtccaaatactcttggacacatgatcttgcactgggaattgactagcc
tgcaggtgttaatttttttttgaaaaatcagcccctttttctccaagcca
ctaacaattgctaataagtacaaagccagaaatgggatggtggtccaaaa
ggccctttccatgataggctctggcctgactttgacttggacagactttg
gcatacagttgcaactactgtgatttcatatgtgcagagtcatgctgctg
tgtccaaaagaagatgtttaaatacacagccttgtaattttactctcttt
ctcccacccctttcatagtcatccttgtgggctgagagttagtgtaatac
atgatttccatttagggctgtcttactttagtctcctccaggctcatata
ttctgtactttgccagttattagacaataactgcctactgaccactaact
gcaaatagaagcttttcagtagagggctaatagaagcactgatcaatatt
tttaatgttaagtaattaaaagtcacttcaatacaatatccatttaacat
cataaagtagtagattctcgcctagtgtctataggttcttggcctgatag
tagtgagaattgtgggtttcatcttgtggaatgaagtgtaaaaccaacta
gtaagtagttggttacttctgagatattaatgatattttcctggtgggca
tatcttctccaggctagcaattatagtagctcacaaagttcagagctggg
ttttgattgatgatccactgtctgtctgatagcttgcaatgcggttttca
gatccctggaaa

gaattctccctctgttattttataggttgactttattccttagattttag
agatagtgatttgaatacatctatcatggtttacaaaatgctatctatgc
tttatggaaaaaaatccttaaagtattgcaatggtgtgaattccatcaga
tcaagtagtttatacacatagttttcaatttctgagcaagaaactaacac
gaacgcgatggtttaaagcaatggtttaaagcaacatctctttgttttca
aaaagttgtttaggtaagaaatctagtggtcttagcaggtggtttgctta
catcctcaaaagttaaggtcaagatgtgaaccagggttgggctcttatct
gagtacttaagggaggaattgttttctaagctcttctttattgcttgtgt
gcgtattttctttgaaattctgacactacgattctcgtgcccttgttgtc
tatcactgtacgcatcctctctgtaggaagaggtagttttcctgccttct
tccccctctcttttttatttataatgaccaggaatgttattctgatatac
ctcatcatacccagcctctgcaattgtttagagaagtgttataaaattta
acataataactattattagaataaatcattctgaatgatacctcttttgc
catataaaatagcaaaacagtgggaataatactgatggtgtccctttaaa
attcttcctgccatagacaggtagtattctgccatccaaggattacataa
tctttccacatgcaaaatgttttaagttttcctgaggctcatcccattgc
agttttagttacaagtaaatgatttcaactatatccacagagattaaaat
catacaaacttatcgtcttaataatctaagtaaaatgcagatgagacttt
tcaatgcagtcctttctgtaccaattccatgcataattctttcccataag
ggtccttaatataaggataaaaaatatattattgcctgcaggcatataca
tggtgtatataggtgtttcttatagaataatctgtcatatgcaaagtgaa
aagactcagttggtccaacgttatgaatatcggccatagatccaattaag
aatttacaacggtcaggaactggcatagtgcgtgctcttaatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114114246_114114770
seq2: B6Ng01-253I18.b_42_566 (reverse)

seq1  AGGATGACTATGAAAGGGGTGGGAGAAAGAGAGTAAAATTACAAGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACTATGAAAGGGGTGGGAGAAAGAGAGTAAAATTACAAGGCTGT  50

seq1  GTATTTAAACATCTTCTTTTGGACACAGCAGCATGACTCTGCACATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAACATCTTCTTTTGGACACAGCAGCATGACTCTGCACATATGA  100

seq1  AATCACAGTAGTTGCAACTGTATGCCAAAGTCTGTCCAAGTCAAAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGTAGTTGCAACTGTATGCCAAAGTCTGTCCAAGTCAAAGTCAG  150

seq1  GCCAGAGCCTATCATGGAAAGGGCCTTTTGGACCACCATCCCATTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCCTATCATGGAAAGGGCCTTTTGGACCACCATCCCATTTCTGG  200

seq1  CTTTGTACTTATTAGCAATTGTTAGTGGCTTGGAGAAAAAGGGGCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACTTATTAGCAATTGTTAGTGGCTTGGAGAAAAAGGGGCTGATT  250

seq1  TTTCAAAAAAAAATTAACACCTGCAGGCTAGTCAATTCCCAGTGCAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAAAAAATTAACACCTGCAGGCTAGTCAATTCCCAGTGCAAGAT  300

seq1  CATGTGTCCAAGAGTATTTGGACAATACAAACATCTTGAACGACAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCCAAGAGTATTTGGACAATACAAACATCTTGAACGACAATAAA  350

seq1  TAAATAAATAAATAAATAAATAAATAAATAAATAAATGGGGTGGATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATGGGGTGGATCTAG  400

seq1  ATAGAGATGGAGAAATAATCTATATATTATCAAAACACATTGTCTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATGGAGAAATAATCTATATATTATCAAAACACATTGTCTATTAT  450

seq1  GTTAATATTATAATAATATAATAACAATTATAATAAATATATAAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTATAATAATATAATAACAATTATAATAAATATATAAAAAAGA  500

seq1  GAAGAAGGATTAATGGAATGAATTC  525
      |||||||||||||||||||||||||
seq2  GAAGAAGGATTAATGGAATGAATTC  525


seq1: chr14_113972203_113973365
seq2: B6Ng01-253I18.g_65_1211

seq1  GAATTCTCCCTCTGTTATTTTATAGGTTGACTTTATTCCTTAGATTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTCTGTTATTTTATAGGTTGACTTTATTCCTTAGATTTTAG  50

seq1  AGATAGTGATTTGAATACATCTATCATGGTTTACAAAATGCTATCTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTGATTTGAATACATCTATCATGGTTTACAAAATGCTATCTATGC  100

seq1  TTTATGGAAAAAAATCCTTAAAGTATTGCAATGGTGTGAATTCCATCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAAAAAAATCCTTAAAGTATTGCAATGGTGTGAATTCCATCAGA  150

seq1  TCAAGTAGTTTATACACATAGTTTTCAATTTCTGAGCAAGAAACTAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGTTTATACACATAGTTTTCAATTTCTGAGCAAGAAACTAACAC  200

seq1  GAACGCGATGGTTTAAAGCAATGGTTTAAAGCAACATCTCTTTGTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCGATGGTTTAAAGCAATGGTTTAAAGCAACATCTCTTTGTTTTCA  250

seq1  AAAAGTTGTTTAGGTAAGAAATCTAGTGGTCTTAGCAGGTGGTTTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTTTAGGTAAGAAATCTAGTGGTCTTAGCAGGTGGTTTGCTTA  300

seq1  CATCCTCAAAAGTTAAGGTCAAGATGTGAACCAGGGTTGGGCTCTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCAAAAGTTAAGGTCAAGATGTGAACCAGGGTTGGGCTCTTATCT  350

seq1  GAGTACTTAAGGGAGGAATTGTTTTCTAAGCTCTTCTTTATTGCTTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTAAGGGAGGAATTGTTTTCTAAGCTCTTCTTTATTGCTTGTGT  400

seq1  GCGTATTTTCTTTGAAATTCTGACACTACGATTCTCGTGCCCTTGTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATTTTCTTTGAAATTCTGACACTACGATTCTCGTGCCCTTGTTGTC  450

seq1  TATCACTGTACGCATCCTCTCTGTAGGAAGAGGTAGTTTTCCTGCCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGTACGCATCCTCTCTGTAGGAAGAGGTAGTTTTCCTGCCTTCT  500

seq1  TCCCCCTCTCTTTTTTATTTATAATGACCAGGAATGTTATTCTGATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCTCTTTTTTATTTATAATGACCAGGAATGTTATTCTGATATAC  550

seq1  CTCATCATACCCAGCCTCTGCAATTGTTTAGAGAAGTGTTATAAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATACCCAGCCTCTGCAATTGTTTAGAGAAGTGTTATAAAATTTA  600

seq1  ACATAATAACTATTATTAGAATAAATCATTCTGAATGATACCTCTTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAACTATTATTAGAATAAATCATTCTGAATGATACCTCTTTTGC  650

seq1  CATATAAAATAGCAAAACAGTGGGAATAATACTGATGGTGTCCCTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAAATAGCAAAACAGTGGGAATAATACTGATGGTGTCCCTTTAAA  700

seq1  ATTCTTCCTGCCATAGACAGGTAGTATTCTGCCATCCAAGGATTACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTGCCATAGACAGGTAGTATTCTGCCATCCAAGGATTACATAA  750

seq1  TCTTTCCACATGCAAAATGTTTTAAGTTTTCCTGAGGCTCATCCCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACATGCAAAATGTTTTAAGTTTTCCTGAGGCTCATCCCATTGC  800

seq1  AGTTTTAGTTACAAGTAAATGATTTCAACTATATCCACAGAGATTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTTACAAGTAAATGATTTCAACTATATCCACAGAGATTAAAAT  850

seq1  CATACAAACTTATCGTCTTAATAATCTAAGTAAAATGCAGATGAGACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAACTTATCGTCTTAATAATCTAAGTAAAATGCAGATGAGACTTT  900

seq1  TCAATGCAGTCCTTTCTGTACCAATTCCATGCATAATTCTTTCCCATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAATGCAGTCCTTTCTGTACCAATTCCATGCATAATTCTTTCCCATAA-  949

seq1  GGGTCCTTAAATATAAGGATAAAAAATATATTATTGCCTGCAAGGCATAT  1000
      |||||||| |||||||||||||||||||||||||||||||| ||||||| 
seq2  GGGTCCTT-AATATAAGGATAAAAAATATATTATTGCCTGC-AGGCATA-  996

seq1  TACAATGGTGTATATAGGTGTTTCTTATAG-ATAATCTTGTTCCAATAAT  1049
      ||| |||||||||||||||||||||||||| |||||| |||  ||   ||
seq2  TAC-ATGGTGTATATAGGTGTTTCTTATAGAATAATC-TGT--CA--TAT  1040

seq1  GCAAAGTGAAAAGACTCAG-TGGTCAAACGTTATG-ATATCCGGCCATAA  1097
      ||||||||||||||||||| ||||| ||||||||| |||| |||||||  
seq2  GCAAAGTGAAAAGACTCAGTTGGTCCAACGTTATGAATAT-CGGCCAT--  1087

seq1  AAATTCAAATAAAGATTTACAACGGGTTTCAGGAACTGGCAATAAGTTTC  1147
      | || ||| |||  |||||||||||   |||||||||||| |||   | |
seq2  AGATCCAATTAAGAATTTACAACGG---TCAGGAACTGGC-ATA--GTGC  1131

seq1  GTGGCTCTTAA-GTGTG  1163
      || |||||||| |||||
seq2  GT-GCTCTTAATGTGTG  1147


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