BAC Information

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BAC

Clone NameB6Ng01-253J15
Chromosome14 (Build37)
Map Location 79,751,195 - 79,752,391
singlet/doubletsinglet
Overlap geneNarg1l
Upstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik
Downstream geneMtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253J15.bB6Ng01-253J15.g
ACCGA060290GA060291
length1,1971,076
definitionB6Ng01-253J15.b B6Ng01-253J15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagaattgaactgataatagaaagtgggctaaaacgggaccaa
agactgaaaatgttttcataaataatcaaacaaatgtttaaagtaaatat
tccaaccaatgacaaaaatataatgccctacattgaagctaggaagttat
atatattttttataaagttcttacacttacctgaactaacaaatatttgt
aacaaatccagggatacctcgctctgtgtatgtctctctgtctctgtctt
tctgtcttactatgcctcaggctggttttaaactcaaaatcctcctgcct
tagtctcctaggtgctggactgataggcatgcaccatgtccagtgttgct
tgcttttaatagtatgcggcagaggggcggtagagaagtaagagacttgt
tatgaaactgcaggggcatgagcagaggaacagcttagcccacagcggca
gggcgggaacctaaaagtggactgagaagcatggcaacagtagtaggcct
ttgcagtagtgacctcgagtcagcaagaaaatgtgaagtagcagaaagaa
aacgagggtgaaagtagttaaaataagagctttgatgcttaaaaatagtc
ttagtaatctggagtccgttctgtaagagtcatgaacactcgtggagccg
agtaagtgagaccactgtgaagggctgcagagagggctcagtgaggaagg
tgcttgctgccaggacctgcaagtagatctttaagactcaaaggtgaaag
aaaagcattgactccttcaaattgtcctctgacctccaaaagtgttgtgc
cttgtatgtatacacatatacaaacatacaaaataaattaatacattttt
taaaatatcacaagctttaatgtcacttatgcccattgctatttattggg
ataatacttgtggtcagagttggaaaagaaaaagtgactttttcttgtca
ggattgaacccaagctttaaatttaaattttttttttttttgtttgttgt
ttgtttttttataatgtaacttggggagtagttttatgcttgctgcttta
tatttattaaatgcacatttccattttaagaaagaacattctgccatgga
gatcttgaatgaaatgcaatgtatgtgacttggagaacggaagtgcatac
tggcattcaggcctggggggattatgggggatgtctcgaaaaagtgc
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagttctaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacatttcctaaacacatgaaactcagaa
aatgagactgagtgtgaacacctatgccccctccttagaagtgggaacaa
aacacccttggaaggagttacaggagacaaagtttggagctgaagataaa
gatgaaccatgtagacacctagcaattccggggatccatcccataatcag
ctcaaatgctgaacaccaattgcatacactagcaagatatgtctgaaaga
ccctgaataagcctgtctctcttgtccagatatgccctgggcttagcaaa
cataagagtggaatgctccaagtcggctatggatggaatcacatgcccca
tgaggaggtgagaaagttccaagagcctaagggaatcgcaaccctgtagg
gaacacttgagaactacggtacggaaccttggactcgacgtcaatagtca
acaacggtcctatctgctcactctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79751195_79752391
seq2: B6Ng01-253J15.b_48_1244 (reverse)

seq1  GCACTTTTTCAAGGCAT-CCCCAT-ATCTCCCCAGGCGCTGATAGGCAGA  48
      |||||||||| || ||| |||||| ||| |||||||| ||||  | ||| 
seq2  GCACTTTTTCGAGACATCCCCCATAATCCCCCCAGGC-CTGAATGCCAG-  48

seq1  AATGCAC-TCCG-TCT-CAAACCACATACACTGCATTTCATTCAGATTCT  95
       |||||| |||| ||| |||  |||||||| |||||||||||||   |||
seq2  TATGCACTTCCGTTCTCCAAGTCACATACATTGCATTTCATTCAAGATCT  98

seq1  CCATGGCAG-ATGTTCCTTCCTAAAATGGAAATGTGCATTTAATAAATAT  144
      ||||||||| |||||| ||| |||||||||||||||||||||||||||||
seq2  CCATGGCAGAATGTTCTTTCTTAAAATGGAAATGTGCATTTAATAAATAT  148

seq1  AAAGCAGCAAGCAATAAAACTACTCCCCAAGTTACATTTATAAAAAAAAC  194
      |||||||||||| ||||||||||||||||||||||| |||| ||||||||
seq2  AAAGCAGCAAGC-ATAAAACTACTCCCCAAGTTACA-TTAT-AAAAAAAC  195

seq1  AAACAAACAAAC--AAAAAAAAAAAATTTAAATTTAAAGCCTTGGGTTCA  242
      |||| |||||||  ||||||||||||||||||||||||| ||||||||| 
seq2  AAAC-AACAAACAAAAAAAAAAAAAATTTAAATTTAAAG-CTTGGGTTC-  242

seq1  AATCCTGACAAGAAAAAGTCACTTTTTCTTTTCCAACTCTGACCACAAGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGACAAGAAAAAGTCACTTTTTCTTTTCCAACTCTGACCACAAGT  292

seq1  ATTATCCCAATAAATAGCAATGGGCATAAGTGACATTAAAGCTTGTGATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCAATAAATAGCAATGGGCATAAGTGACATTAAAGCTTGTGATA  342

seq1  TTTTAAAAAATGTATTAATTTATTTTGTATGTTTGTATATGTGTATACAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATGTATTAATTTATTTTGTATGTTTGTATATGTGTATACAT  392

seq1  ACAAGGCACAACACTTTTGGAGGTCAGAGGACAATTTGAAGGAGTCAATG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCACAACACTTTTGGAGGTCAGAGGACAATTTGAAGGAGTCAATG  442

seq1  CTTTTCTTTCACCTTTGAGTCTTAAAGATCTACTTGCAGGTCCTGGCAGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCACCTTTGAGTCTTAAAGATCTACTTGCAGGTCCTGGCAGC  492

seq1  AAGCACCTTCCTCACTGAGCCCTCTCTGCAGCCCTTCACAGTGGTCTCAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTTCCTCACTGAGCCCTCTCTGCAGCCCTTCACAGTGGTCTCAC  542

seq1  TTACTCGGCTCCACGAGTGTTCATGACTCTTACAGAACGGACTCCAGATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCGGCTCCACGAGTGTTCATGACTCTTACAGAACGGACTCCAGATT  592

seq1  ACTAAGACTATTTTTAAGCATCAAAGCTCTTATTTTAACTACTTTCACCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACTATTTTTAAGCATCAAAGCTCTTATTTTAACTACTTTCACCC  642

seq1  TCGTTTTCTTTCTGCTACTTCACATTTTCTTGCTGACTCGAGGTCACTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTCTTTCTGCTACTTCACATTTTCTTGCTGACTCGAGGTCACTAC  692

seq1  TGCAAAGGCCTACTACTGTTGCCATGCTTCTCAGTCCACTTTTAGGTTCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGCCTACTACTGTTGCCATGCTTCTCAGTCCACTTTTAGGTTCC  742

seq1  CGCCCTGCCGCTGTGGGCTAAGCTGTTCCTCTGCTCATGCCCCTGCAGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGCCGCTGTGGGCTAAGCTGTTCCTCTGCTCATGCCCCTGCAGTT  792

seq1  TCATAACAAGTCTCTTACTTCTCTACCGCCCCTCTGCCGCATACTATTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAAGTCTCTTACTTCTCTACCGCCCCTCTGCCGCATACTATTAA  842

seq1  AAGCAAGCAACACTGGACATGGTGCATGCCTATCAGTCCAGCACCTAGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCAACACTGGACATGGTGCATGCCTATCAGTCCAGCACCTAGGA  892

seq1  GACTAAGGCAGGAGGATTTTGAGTTTAAAACCAGCCTGAGGCATAGTAAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGCAGGAGGATTTTGAGTTTAAAACCAGCCTGAGGCATAGTAAG  942

seq1  ACAGAAAGACAGAGACAGAGAGACATACACAGAGCGAGGTATCCCTGGAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGACAGAGACAGAGAGACATACACAGAGCGAGGTATCCCTGGAT  992

seq1  TTGTTACAAATATTTGTTAGTTCAGGTAAGTGTAAGAACTTTATAAAAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAAATATTTGTTAGTTCAGGTAAGTGTAAGAACTTTATAAAAAA  1042

seq1  TATATATAACTTCCTAGCTTCAATGTAGGGCATTATATTTTTGTCATTGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAACTTCCTAGCTTCAATGTAGGGCATTATATTTTTGTCATTGG  1092

seq1  TTGGAATATTTACTTTAAACATTTGTTTGATTATTTATGAAAACATTTTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATATTTACTTTAAACATTTGTTTGATTATTTATGAAAACATTTTC  1142

seq1  AGTCTTTGGTCCCGTTTTAGCCCACTTTCTATTATCAGTTCAATTCTTGG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGTCCCGTTTTAGCCCACTTTCTATTATCAGTTCAATTCTTGG  1192

seq1  AATTC  1197
      |||||
seq2  AATTC  1197