BAC Information

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BAC

Clone NameB6Ng01-254B15
Chromosome14 (Build37)
Map Location 75,085,602 - 75,206,080
singlet/doubletdoublet
Overlap geneHtr2a, LOC668508, Esd, Lrch1
Upstream geneLOC100043734, EG629578, LOC629583
Downstream geneENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254B15.bB6Ng01-254B15.g
ACCGA060659GA060660
length1,1641,159
definitionB6Ng01-254B15.b B6Ng01-254B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,204,914 - 75,206,080)(75,085,602 - 75,086,761)
sequence
gaattcattggcctgcatttgtgtagcaagaagagtagccaaaccgtgat
caaatttctcttcctgggaagtccctctgtatcactctatcttaccagct
ccttgttggatacacttctgagaggccaaggaggcctgactcagtgtagc
atcagagaatcacgagggaggaaagtgaggccagataaagctttgcaaac
cccgttatcagtttcacatctcttcccaaccctgactctaaagtcaggat
tatccgtggagctttctagagggcccgtctttacttgagattggatttgc
ttaggtgtgttgggggctagttcctttcataagctccacagttgattttc
ctgcattgataaagaatcaggcctgagagctgctgttccacactgagccc
ctcacatggaactagagttggaagcctaggaattgatacagctccactct
ggggagccaggctggtcttatgggaagacccagtgtccttgtctgttgcc
tgactggccatggagcaagtggaagcctggagatgaactgagttttccct
gcccagggacttctcccacctccatagcacccacctacaggatacttatg
tgtcttcattacagtactgagtttgtcaaaatccttattagaagattgac
ggggttttgtgaggctgcacttaagatgtcttgctaaacgttctgcactc
acacttggttttatgttacagactaaattcatccaaagaccgggagctgg
atatagcgatgattgagcagctgagagaggcagagctgcttcaggatccc
aacgggtatgcacgtctgttcctggcctggcccttgtgcgtaaatgaggg
ctactaacttactgagcacattatgtcagttatatcaccgtctaacacat
ttagagcagagttggtctgtatgtaaccactaacaaagtgaagtcctttt
agttgcctattccccaagatccaaagtaaaagaatcaaagttctgtagca
gttgagaccagtttcctggtcctaacctctcgtgacaatcatatggaatg
gctggtttcatttatggaaaacagaaatatgggtagaggcacagaaataa
tttctactgaatataaacatagagaaaaaccttactaaaaaatggaagtt
aacttctacttatt
gaattctgtgcctaagccttgactttgtcttttcaaaatggtatattagt
ttgattataaatctatgagggactgatgccttgcttttactttaatgagt
ttctacagagaaaaatttcaactgtgtactctcacaagggatgagacagt
actggcaggggcccaagaatgtcttgagtcttgttctcagcccactgcga
aatgcctcagttttctaagacaaagcacaggaagggactactttcatcta
cccctttgtcctcaactcacatcacatcattgcttcccccattggatgct
aggaagcaggtcccttataagaaggtctaggtgagagcaggtgggatcag
aaggcagcataagttctagcattcagtgccatttcagacctttgatacct
cttatttttggagagcctacttacatatatataaatgtgttatgctaaat
aacttagatgtttaactattaggcatgtccaatgaataggaacattttaa
cagatatttaaatgtattaattctgagattgcaaattgtcatattttgga
taatacatttttccacacttaaaattctcatagattcctacctgcctgtc
tgccaccttcattagggagggtaatgtggggattctacctatgtttacat
gtttgttggctacatggaatgaagggcattctaaaagcattaaaaaataa
ataaaaagcaaagaaaaatgtctctatttgggtattccttccccattttc
tcactccccgaggagctgcaaactgaaagcgacatgaccatatatggttc
caaagagatgtctacagagatctctttgctaaaagacatactagataaag
tcctgtgaaatttttgtttcgaagatcataatgtttatcagactgtctgt
attttagtctgtatttgtgtagtgtccctgagtttgaccagcctacagta
tcccttctgaatgatagtgcaggggtgttatcaactttcttgggtttggt
gcagcatgattcttgtctcctttggacattcaggagactaggatcaaggt
agcagcaggacactcccctctggggcctttttatggctttgtcctagatt
ctggggcctagttagtgattctgatgtctcttggcattcgaagagtcacc
ttaatctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75204914_75206080
seq2: B6Ng01-254B15.b_45_1208 (reverse)

seq1  AATAAGTAGAAGTTTTAAATTTCCATTTTTTTAGTAGGGTTTTCCTCCTA  50
      ||||||||||||||   || ||||| |||||||||| |||||| || |||
seq2  AATAAGTAGAAGTT---AACTTCCA-TTTTTTAGTAAGGTTTTTCT-CTA  45

seq1  TGTTTATAAATCAGTAGAAATTA-TTCTGTGCTTCTA-CCATATTTCTGT  98
      ||||||| | ||||||||||||| |||||||| |||| ||||||||||||
seq2  TGTTTAT-ATTCAGTAGAAATTATTTCTGTGCCTCTACCCATATTTCTGT  94

seq1  TTTCCATAAATGAAACCAGCCATTCCATATGAATGTCACGAGAGGTTAGG  148
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCCATAAATGAAACCAGCCATTCCATATGATTGTCACGAGAGGTTAGG  144

seq1  ACCAGGAAACTGGTCTCAACTGCTACAGAACTTTGATTCTTTTACTTTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAACTGGTCTCAACTGCTACAGAACTTTGATTCTTTTACTTTGG  194

seq1  ATCTTGGGGAATAGGCAACT-AAAGGACTTCACTTTGTTAGTGGTTACAT  247
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCTTGGGGAATAGGCAACTAAAAGGACTTCACTTTGTTAGTGGTTACAT  244

seq1  ACAGACCAACTCTGCTCTAAATGTGTTAGACGGTGATATAACTGACATAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAACTCTGCTCTAAATGTGTTAGACGGTGATATAACTGACATAA  294

seq1  TGTGCTCAGTAAGTTAGTAGCCCTCATTTACGCACAAGGGCCAGGCCAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAGTAAGTTAGTAGCCCTCATTTACGCACAAGGGCCAGGCCAGG  344

seq1  AACAGACGTGCATACCCGTTGGGATCCTGAAGCAGCTCTGCCTCTCTCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACGTGCATACCCGTTGGGATCCTGAAGCAGCTCTGCCTCTCTCAG  394

seq1  CTGCTCAATCATCGCTATATCCAGCTCCCGGTCTTTGGATGAATTTAGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAATCATCGCTATATCCAGCTCCCGGTCTTTGGATGAATTTAGTC  444

seq1  TGTAACATAAAACCAAGTGTGAGTGCAGAACGTTTAGCAAGACATCTTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATAAAACCAAGTGTGAGTGCAGAACGTTTAGCAAGACATCTTAA  494

seq1  GTGCAGCCTCACAAAACCCCGTCAATCTTCTAATAAGGATTTTGACAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCTCACAAAACCCCGTCAATCTTCTAATAAGGATTTTGACAAAC  544

seq1  TCAGTACTGTAATGAAGACACATAAGTATCCTGTAGGTGGGTGCTATGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTGTAATGAAGACACATAAGTATCCTGTAGGTGGGTGCTATGGA  594

seq1  GGTGGGAGAAGTCCCTGGGCAGGGAAAACTCAGTTCATCTCCAGGCTTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGAAGTCCCTGGGCAGGGAAAACTCAGTTCATCTCCAGGCTTCC  644

seq1  ACTTGCTCCATGGCCAGTCAGGCAACAGACAAGGACACTGGGTCTTCCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCCATGGCCAGTCAGGCAACAGACAAGGACACTGGGTCTTCCCA  694

seq1  TAAGACCAGCCTGGCTCCCCAGAGTGGAGCTGTATCAATTCCTAGGCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAGCCTGGCTCCCCAGAGTGGAGCTGTATCAATTCCTAGGCTTC  744

seq1  CAACTCTAGTTCCATGTGAGGGGCTCAGTGTGGAACAGCAGCTCTCAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTAGTTCCATGTGAGGGGCTCAGTGTGGAACAGCAGCTCTCAGGC  794

seq1  CTGATTCTTTATCAATGCAGGAAAATCAACTGTGGAGCTTATGAAAGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTTTATCAATGCAGGAAAATCAACTGTGGAGCTTATGAAAGGAA  844

seq1  CTAGCCCCCAACACACCTAAGCAAATCCAATCTCAAGTAAAGACGGGCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCCAACACACCTAAGCAAATCCAATCTCAAGTAAAGACGGGCCC  894

seq1  TCTAGAAAGCTCCACGGATAATCCTGACTTTAGAGTCAGGGTTGGGAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAGCTCCACGGATAATCCTGACTTTAGAGTCAGGGTTGGGAAGA  944

seq1  GATGTGAAACTGATAACGGGGTTTGCAAAGCTTTATCTGGCCTCACTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAAACTGATAACGGGGTTTGCAAAGCTTTATCTGGCCTCACTTTC  994

seq1  CTCCCTCGTGATTCTCTGATGCTACACTGAGTCAGGCCTCCTTGGCCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCGTGATTCTCTGATGCTACACTGAGTCAGGCCTCCTTGGCCTCT  1044

seq1  CAGAAGTGTATCCAACAAGGAGCTGGTAAGATAGAGTGATACAGAGGGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGTATCCAACAAGGAGCTGGTAAGATAGAGTGATACAGAGGGAC  1094

seq1  TTCCCAGGAAGAGAAATTTGATCACGGTTTGGCTACTCTTCTTGCTACAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGAAGAGAAATTTGATCACGGTTTGGCTACTCTTCTTGCTACAC  1144

seq1  AAATGCAGGCCAATGAATTC  1167
      ||||||||||||||||||||
seq2  AAATGCAGGCCAATGAATTC  1164

seq1: chr14_75085602_75086761
seq2: B6Ng01-254B15.g_68_1226

seq1  GAATTCTGTGCCTAAGCCTTGACTTTGTCTTTTCAAAATGGTATATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCTAAGCCTTGACTTTGTCTTTTCAAAATGGTATATTAGT  50

seq1  TTGATTATAAATCTATGAGGGACTGATGCCTTGCTTTTACTTTAATGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATAAATCTATGAGGGACTGATGCCTTGCTTTTACTTTAATGAGT  100

seq1  TTCTACAGAGAAAAATTTCAACTGTGTACTCTCACAAGGGATGAGACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGAGAAAAATTTCAACTGTGTACTCTCACAAGGGATGAGACAGT  150

seq1  ACTGGCAGGGGCCCAAGAATGTCTTGAGTCTTGTTCTCAGCCCACTGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGGGGCCCAAGAATGTCTTGAGTCTTGTTCTCAGCCCACTGCGA  200

seq1  AATGCCTCAGTTTTCTAAGACAAAGCACAGGAAGGGACTACTTTCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCAGTTTTCTAAGACAAAGCACAGGAAGGGACTACTTTCATCTA  250

seq1  CCCCTTTGTCCTCAACTCACATCACATCATTGCTTCCCCCATTGGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTCCTCAACTCACATCACATCATTGCTTCCCCCATTGGATGCT  300

seq1  AGGAAGCAGGTCCCTTATAAGAAGGTCTAGGTGAGAGCAGGTGGGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGGTCCCTTATAAGAAGGTCTAGGTGAGAGCAGGTGGGATCAG  350

seq1  AAGGCAGCATAAGTTCTAGCATTCAGTGCCATTTCAGACCTTTGATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCATAAGTTCTAGCATTCAGTGCCATTTCAGACCTTTGATACCT  400

seq1  CTTATTTTTGGAGAGCCTACTTACATATATATAAATGTGTTATGCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTGGAGAGCCTACTTACATATATATAAATGTGTTATGCTAAAT  450

seq1  AACTTAGATGTTTAACTATTAGGCATGTCCAATGAATAGGAACATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGATGTTTAACTATTAGGCATGTCCAATGAATAGGAACATTTTAA  500

seq1  CAGATATTTAAATGTATTAATTCTGAGATTGCAAATTGTCATATTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTAAATGTATTAATTCTGAGATTGCAAATTGTCATATTTTGGA  550

seq1  TAATACATTTTTCCACACTTAAAATTCTCATAGATTCCTACCTGCCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATTTTTCCACACTTAAAATTCTCATAGATTCCTACCTGCCTGTC  600

seq1  TGCCACCTTCATTAGGGAGGGTAATGTGGGGATTCTACCTATGTTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTCATTAGGGAGGGTAATGTGGGGATTCTACCTATGTTTACAT  650

seq1  GTTTGTTGGCTACATGGAATGAAGGGCATTCTAAAAGCATTAAAAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGGCTACATGGAATGAAGGGCATTCTAAAAGCATTAAAAAATAA  700

seq1  ATAAAAAGCAAAGAAAAATGTCTCTATTTGGGTATTCCTTCCCCATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCAAAGAAAAATGTCTCTATTTGGGTATTCCTTCCCCATTTTC  750

seq1  TCACTCCCCGAGGAGCTGCAAACTGAAAGCGACATGACCATATATGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCCGAGGAGCTGCAAACTGAAAGCGACATGACCATATATGGTTC  800

seq1  CAAAGAGATGTCTACAGAGATCTCTTTGCTAAAAGACATACTAGATTAAG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAAGAGATGTCTACAGAGATCTCTTTGCTAAAAGACATACTAGATAAAG  850

seq1  TCCTGTGAAATTTTTGTTTCGAAGATCATAATGTTTATCAGACTGTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAAATTTTTGTTTCGAAGATCATAATGTTTATCAGACTGTCTGT  900

seq1  ATTTTAGTCTGTATTTGTGTAGGTGTCCCTGAGTTTGACCAGCCTACAGT  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTTAGTCTGTATTTGTGTA-GTGTCCCTGAGTTTGACCAGCCTACAGT  949

seq1  ATCCCTTCTGAATGATAGTGCAGGGGTG-TATCAAC-TTCCTGGGTTTGG  998
      |||||||||||||||||||||||||||| ||||||| ||| |||||||||
seq2  ATCCCTTCTGAATGATAGTGCAGGGGTGTTATCAACTTTCTTGGGTTTGG  999

seq1  TGCAGCATGGTTCTTGTCTCCCTTTGGACA-TCAGGAGACTAGGATCAAG  1047
      ||||||||| ||||||||| |||||||||| |||||||||||||||||||
seq2  TGCAGCATGATTCTTGTCT-CCTTTGGACATTCAGGAGACTAGGATCAAG  1048

seq1  GTAGCAGCCAGGACACTTCCCTCTGGGGCCCTTTTTATGCCTTTGTCTTA  1097
      ||||||| ||||||||| |||||||||| |||||||||| ||||||| ||
seq2  GTAGCAG-CAGGACACTCCCCTCTGGGG-CCTTTTTATGGCTTTGTCCTA  1096

seq1  GATTCTGGGGCTATGTTAGTGATTCCTGATGTCTCTTGGCTTTCAGAGAG  1147
      |||||||||||   |||||||||| ||||||||||||||| |||  ||||
seq2  GATTCTGGGGCCTAGTTAGTGATT-CTGATGTCTCTTGGCATTCGAAGAG  1145

seq1  TCACC-TAATCTCT  1160
      ||||| ||||||||
seq2  TCACCTTAATCTCT  1159