BAC Information

Click to search

BAC

Clone NameB6Ng01-256B06
Chromosome14 (Build37)
Map Location 114,024,662 - 114,200,424
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256B06.bB6Ng01-256B06.g
ACCGA062128GA062129
length1,1711,163
definitionB6Ng01-256B06.b B6Ng01-256B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,199,234 - 114,200,424)(114,024,662 - 114,025,807)
sequence
gaattctaaaactaatattgcttcttagtaaacttctatttccatttcaa
atgtttttttctagttcctcaaatatttcagcaactcatacactaaccct
ggaagaataccgagaggcttatcctgtcaccttttacttattttcattta
taaacaataaaatgatgaaggaataattcatcaacaacctgaacagtata
ttatagctacaatttttgtttaaattgtaatttatgctttatattcaaaa
tgtaaattttccctaaatacagatggagtcccttaaacatattcaacaac
aatgaagttgtaaactcacccagctttgtcacagagtatctctcagaatt
atcatgaggtcacttatatttgactgtttcaaaatccaaagtaatataca
attttcttctagtattatcctgattgaggaagaaaaatctcattgtagat
tctttatggcttcagtcctaattggtaaaattgggtgttctacgtaattg
gtatagatatatggataggtgcaagaaaatgaattacttatgtggttttc
tcagtaacagatgtgggtttgtaaatatacaggctggatgagcctactgc
ttgcaacgactctgcccactaagtcaggatgtatattgtggttctcactg
tgtttccttagctcggcagaaagatctgcctctgtctgctctgatgtcca
ctctgcagtttcagaagagacttcaaatgcatgcttgcatttcatttagg
atatgcttttcttcaatattccgaaaacatgctccattgaaagcaagcaa
aaaacaaatgtcagaagtgaaattgtaacttatcatgcatgctgtaatgg
cagtcactacaaccttacgtaagttttctatcttccatgctcaaacatca
tggcacaaagaaaatctttttaatggagcacagtcaaatactgagaaaca
gaatcaatcagagggacagagagtgcgagctcattattagtagcactgac
actggaaaacagaacatgcttgtgctgcaattcaaatagcctgtagtgtt
tctatagcactcaataaataaatcactatttatggcatgcaatgacccca
tacctagatttcttttgttccatctaggattggttttgttgacaactatg
tggaataaacaaggtcttcat

gaattcagtgcttttcttcctcactctggatgccttttctctaaattcag
aagtgatttctctaattatcagatcctaaccctattattcagtgtcatct
cgaattgaaattcattttaaaaatcaaatccaatatctatgtctgatatt
cacatattttagatgaggtatctctatgtaacccaggattctaatttcaa
caggcttaaataagcctatgtctactaagataatagcagggatcctaact
tccccttctctgagattaactcctgttcttgactgcctgtcttttgaccc
aagctctgctctttctatccatggcctttttttatttaattgttgctgtt
tcgtataaatatataagtaaaacctactgtgtctgcttagtcatgcttga
atataattttagatgtgtagaaatgttcgtttgaaattatttttttctat
agaagagaatttagattgtagttttttttaaataaactttgtatttcttt
tgaaaacctaaaagataattttagaaatgccttcctaaatcaagcatcat
agcacgaagatacatagataaagtttccacacaccatgttgtgctggtcc
caagaagcctatcatacctctactacagattgcataaaacatgatccatt
ctctaagattaaaaaatgtgcataaacacttgttttcatatcaaaatata
ttgatagcttttgtaataaggtgattattctctttacttaatatttgtat
tagttttaacatatttaatgagttttcatattttctcttctcaaattgac
tgctttttcttatctagtttttaatgtcctgcctttttatttaacagtta
ttatggatataatcactttcctattatgtaagttacaattattttcttca
tttaccatgtctccattaaaaacacatattctcttcagctgttatttaac
ttattttattcaatttgttcttgtgtactattttgtataaatatattatt
ttttcaaagccccatctgcccttcagttctaataagcacaattctgcttt
caattctataattgttattgttgtttcttacatttgggtattcccattca
gaatccaacctgctaggcttgcacattacttgttattttccagcctgttt
cctctaatggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114199234_114200424
seq2: B6Ng01-256B06.b_47_1217 (reverse)

seq1  ATGAAGAC--TG-TTAT--CACATAATTGTCAACCAAAACACAATCTCTA  45
      ||||||||  || ||||  |||||| ||||||| |||||| ||||| |||
seq2  ATGAAGACCTTGTTTATTCCACATAGTTGTCAA-CAAAAC-CAATC-CTA  47

seq1  GAAGTGGAACAAAAGAAATCTAGGGTTATGGGGGTCATTTGGCATTGCAA  95
      ||  ||||||||||||||||||||  ||| |||||||||  ||| ||| |
seq2  GA--TGGAACAAAAGAAATCTAGG--TAT-GGGGTCATT--GCA-TGCCA  89

seq1  TTAAAATAGGTGAATTTTATTTATTGAGTTGGCTATAGAAACAACTTACA  145
      |  ||||| ||||  ||||||||||||||  ||||||||||||   ||||
seq2  T--AAATA-GTGA--TTTATTTATTGAGT--GCTATAGAAACA--CTACA  130

seq1  GGCTATTTGGAATTTGCAGCACAAGCAATGTTCTGTTTTCCAGTGTTCAG  195
      |||||||||  | ||||||||||||| |||||||||||||||||| ||||
seq2  GGCTATTTG--AATTGCAGCACAAGC-ATGTTCTGTTTTCCAGTG-TCAG  176

seq1  TGCTAACTAATAATGGGCTCGCACTCTCTGTTCCTCTGATTGATTCTGTT  245
      |||| |||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TGCT-ACTAATAATGAGCTCGCACTCTCTGTCCCTCTGATTGATTCTGTT  225

seq1  TCTCAGTATTTGACTGTGCTCCATT-AAAAGATTTTCTTTGTGCCATGAT  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTCAGTATTTGACTGTGCTCCATTAAAAAGATTTTCTTTGTGCCATGAT  275

seq1  GTTTGAGCATGGAAGATAGAAAACTTACGTAAGGTTTGTAGTGACTGCCA  344
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTTGAGCATGGAAGATAGAAAACTTACGTAAGG-TTGTAGTGACTGCCA  324

seq1  TTACAGCATGCATGATAAGTTACAATTTCACTTCTGACATTTGTTTTTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCATGCATGATAAGTTACAATTTCACTTCTGACATTTGTTTTTTG  374

seq1  CTTGCTTTCAATGGAGCATGTTTTCGGAATATTGAAGAAAAGCATATCCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCAATGGAGCATGTTTTCGGAATATTGAAGAAAAGCATATCCT  424

seq1  AAATGAAATGCAAGCATGCATTTGAAGTCTCTTCTGAAACTGCAGAGTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGCAAGCATGCATTTGAAGTCTCTTCTGAAACTGCAGAGTGG  474

seq1  ACATCAGAGCAGACAGAGGCAGATCTTTCTGCCGAGCTAAGGAAACACAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAGCAGACAGAGGCAGATCTTTCTGCCGAGCTAAGGAAACACAG  524

seq1  TGAGAACCACAATATACATCCTGACTTAGTGGGCAGAGTCGTTGCAAGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCACAATATACATCCTGACTTAGTGGGCAGAGTCGTTGCAAGCA  574

seq1  GTAGGCTCATCCAGCCTGTATATTTACAAACCCACATCTGTTACTGAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCATCCAGCCTGTATATTTACAAACCCACATCTGTTACTGAGAA  624

seq1  AACCACATAAGTAATTCATTTTCTTGCACCTATCCATATATCTATACCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATAAGTAATTCATTTTCTTGCACCTATCCATATATCTATACCAA  674

seq1  TTACGTAGAACACCCAATTTTACCAATTAGGACTGAAGCCATAAAGAATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTAGAACACCCAATTTTACCAATTAGGACTGAAGCCATAAAGAATC  724

seq1  TACAATGAGATTTTTCTTCCTCAATCAGGATAATACTAGAAGAAAATTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAGATTTTTCTTCCTCAATCAGGATAATACTAGAAGAAAATTGT  774

seq1  ATATTACTTTGGATTTTGAAACAGTCAAATATAAGTGACCTCATGATAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTTTGGATTTTGAAACAGTCAAATATAAGTGACCTCATGATAAT  824

seq1  TCTGAGAGATACTCTGTGACAAAGCTGGGTGAGTTTACAACTTCATTGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGATACTCTGTGACAAAGCTGGGTGAGTTTACAACTTCATTGTT  874

seq1  GTTGAATATGTTTAAGGGACTCCATCTGTATTTAGGGAAAATTTACATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATATGTTTAAGGGACTCCATCTGTATTTAGGGAAAATTTACATTT  924

seq1  TGAATATAAAGCATAAATTACAATTTAAACAAAAATTGTAGCTATAATAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAAAGCATAAATTACAATTTAAACAAAAATTGTAGCTATAATAT  974

seq1  ACTGTTCAGGTTGTTGATGAATTATTCCTTCATCATTTTATTGTTTATAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGGTTGTTGATGAATTATTCCTTCATCATTTTATTGTTTATAA  1024

seq1  ATGAAAATAAGTAAAAGGTGACAGGATAAGCCTCTCGGTATTCTTCCAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATAAGTAAAAGGTGACAGGATAAGCCTCTCGGTATTCTTCCAGG  1074

seq1  GTTAGTGTATGAGTTGCTGAAATATTTGAGGAACTAGAAAAAAACATTTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTATGAGTTGCTGAAATATTTGAGGAACTAGAAAAAAACATTTG  1124

seq1  AAATGGAAATAGAAGTTTACTAAGAAGCAATATTAGTTTTAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAATAGAAGTTTACTAAGAAGCAATATTAGTTTTAGAATTC  1171


seq1: chr14_114024662_114025807
seq2: B6Ng01-256B06.g_67_1229

seq1  GAATTCAGTGCTTTTCTTCCTCACTCTGGATGCCTTTTCTCTAAATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTTTTCTTCCTCACTCTGGATGCCTTTTCTCTAAATTCAG  50

seq1  AAGTGATTTCTCTAATTATCAGATCCTAACCCTATTATTCAGTGTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTCTCTAATTATCAGATCCTAACCCTATTATTCAGTGTCATCT  100

seq1  CGAATTGAAATTCATTTTAAAAATCAAATCCAATATCTATGTCTGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTGAAATTCATTTTAAAAATCAAATCCAATATCTATGTCTGATATT  150

seq1  CACATATTTTAGATGAGGTATCTCTATGTAACCCAGGATTCTAATTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTTAGATGAGGTATCTCTATGTAACCCAGGATTCTAATTTCAA  200

seq1  CAGGCTTAAATAAGCCTATGTCTACTAAGATAATAGCAGGGATCCTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTAAATAAGCCTATGTCTACTAAGATAATAGCAGGGATCCTAACT  250

seq1  TCCCCTTCTCTGAGATTAACTCCTGTTCTTGACTGCCTGTCTTTTGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTCTGAGATTAACTCCTGTTCTTGACTGCCTGTCTTTTGACCC  300

seq1  AAGCTCTGCTCTTTCTATCCATGGCCTTTTTTTATTTAATTGTTGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCTCTTTCTATCCATGGCCTTTTTTTATTTAATTGTTGCTGTT  350

seq1  TCGTATAAATATATAAGTAAAACCTACTGTGTCTGCTTAGTCATGCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATAAATATATAAGTAAAACCTACTGTGTCTGCTTAGTCATGCTTGA  400

seq1  ATATAATTTTAGATGTGTAGAAATGTTCGTTTGAAATTATTTTTTTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTTAGATGTGTAGAAATGTTCGTTTGAAATTATTTTTTTCTAT  450

seq1  AGAAGAGAATTTAGATTGTAGTTTTTTTTAAATAAACTTTGTATTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAATTTAGATTGTAGTTTTTTTTAAATAAACTTTGTATTTCTTT  500

seq1  TGAAAACCTAAAAGATAATTTTAGAAATGCCTTCCTAAATCAAGCATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCTAAAAGATAATTTTAGAAATGCCTTCCTAAATCAAGCATCAT  550

seq1  AGCACGAAGATACATAGATAAAGTTTCCACACACCATGTTGTGCTGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAAGATACATAGATAAAGTTTCCACACACCATGTTGTGCTGGTCC  600

seq1  CAAGAAGCCTATCATACCTCTACTACAGATTGCATAAAACATGATCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCCTATCATACCTCTACTACAGATTGCATAAAACATGATCCATT  650

seq1  CTCTAAGATTAAAAAATGTGCATAAACACTTGTTTTCATATCAAAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGATTAAAAAATGTGCATAAACACTTGTTTTCATATCAAAATATA  700

seq1  TTGATAGCTTTTGTAATAAGGTGATTATTCTCTTTACTTAATATTTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCTTTTGTAATAAGGTGATTATTCTCTTTACTTAATATTTGTAT  750

seq1  TAGTTTTAACATATTTAATGAGTTTTCATATTTTCTCTTCTCAAATTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAACATATTTAATGAGTTTTCATATTTTCTCTTCTCAAATTGAC  800

seq1  TGCTTTTTCTTATCTAGTTTTTAATGTCCTGCCTTTTTATTTAACAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCTTATCTAGTTTTTAATGTCCTGCCTTTTTATTTAACAGTTA  850

seq1  TTATGGATATAATCACTTTCCTATTATGTAAGTTACAATTATTTTCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATATAATCACTTTCCTATTATGTAAGTTACAATTATTTTCTTCA  900

seq1  TTTACCATGTCTCCATTAAAAACACATATTCTCTTCAGCTGTTATTTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATGTCTCCATTAAAAACACATATTCTCTTCAGCTGTTATTTAAC  950

seq1  TTA-TTTATTCAAATTGTTCTTGTTGTACTATTTTGTATAAATATA-TAT  998
      ||| ||||||||| ||||||||| |||||||||||||||||||||| |||
seq2  TTATTTTATTCAATTTGTTCTTG-TGTACTATTTTGTATAAATATATTAT  999

seq1  TTTTTCAAAGCCCCAATCTG-CCTTCAG-TCT-ATAAGCCACAA-TCTGC  1044
      |||||||||||||| ||||| ||||||| ||| ||||| ||||| |||||
seq2  TTTTTCAAAGCCCC-ATCTGCCCTTCAGTTCTAATAAG-CACAATTCTGC  1047

seq1  CTTCCA-TCTATAA-TGTTA-TGT--GTTCTTACATTT-GGTAT--CCA-  1085
       ||| | ||||||| ||||| |||   ||||||||||| |||||  ||| 
seq2  TTTCAATTCTATAATTGTTATTGTTGTTTCTTACATTTGGGTATTCCCAT  1097

seq1  TCAGAATTCAAACCTGCTA-GCCTGCAC--TACT--GTATTTTCAAGCCT  1130
      |||||| || ||||||||| || |||||  ||||   ||||||| |||||
seq2  TCAGAA-TCCAACCTGCTAGGCTTGCACATTACTTGTTATTTTCCAGCCT  1146

seq1  G-TTCCTCTAATGGCAC  1146
      | |||||||||||||||
seq2  GTTTCCTCTAATGGCAC  1163


| Home | SequenceCutter | Blast | Download |