BAC Information

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BAC

Clone NameB6Ng01-260J15
Chromosome14 (Build37)
Map Location 113,683,671 - 113,801,068
singlet/doubletdoublet
Overlap geneTpm3-rs7
Upstream geneEG223186, LOC100043509
Downstream geneLOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260J15.bB6Ng01-260J15.g
ACCGA065482GA065483
length8861,065
definitionB6Ng01-260J15.b B6Ng01-260J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,800,316 - 113,801,068)(113,683,671 - 113,684,753)
sequence
gaattccattttgttaattttcgtcatcattcagtgtatcagtagtccat
ttttatgtattgttgaagaaaaattattctaactccttttcaattatgca
ctttaaatcattacgagtatcaataaaaaacaacttaggatataagatgt
taactcctcagaggacaataatcaaaaaatttttttgttctatgtgttgt
tatatctgtcaatggctatgcttgctgtgaataatatatgatatattctc
cttagttttcgttttttttttttttctatgagttgagtcctatacaataa
aacaattccatgacccaaagaaataaactttggttaattaatatttggtt
atgaatgacaaaatcagacagtttgatgaatggagtaaatcctcacacct
gtgaaaaccttagctttgatttataagaaaaaaaaagccagattgtgtga
ttctcttcaggggatttacaggtttgggtcttaaccaacagtctttagtt
ccgtatgaatttgaagtacagaacagggcagttgtccaatgtgtctactt
tataggtgcacacacagcttgctcagcaacacttgataacccacctctca
ttgtgcattattgtcgtatcatctgttacagttgattatttattcatggg
ttgacatcggagccctctgctctgtctcagtagcatatatgttgttctct
attccaagtcaggctgttaaagtggttttggaatgtgttttgaaattcag
aattgtgacagttttaattttgcttatagttcttaaaattgttttatatg
ggtgtagtctgtcgtgattacttgtaaaatttaggtttttttaaagtttc
tatttccataaaattacttttggagtaagatgtaca
gaattcactggtatcaacatgaagtccatgactaataatttgttaaggct
ttgagtgaccttccttgctgctcatcatgatacacaacttagaactacac
agtaaaagtctgtaatggagagatatatttcatatatcaccttttagtgt
aatgtcttgaaaagggatttcactccaatttttgcatttgcacacacact
atatgtataaaaatatatacatatacattatatatgtatataacactata
cacattatataaatatattatacatattataaatgtatatttgggtattt
ttttgctacacacattttttaaattaatgaatgaataaattaatttcacc
ctccatattttgtctaccctcctactgctccacttcccatacctcctctc
caccccctgtctccacatagatgtccctacctcccatgccacatgacctc
taaactccctggggcctccagattcttgagtgctaggtgtttcatctttg
aatgaacacagacctagcagtcctctgctgtatgtgcacacattgattga
gtgaaggtaacttccttctcactgctagcggaaaatgtaaaaagaaagtt
ttgggaagcctactggtgctttatagattgagacaaaataaaattcttaa
aattgatgacatattaaagataatatggcaagtttgtttcatttaattat
ttttatcatggattcattttgttttattttactccatttagtaggagatg
aaacttagtactctctatatacttaacaatgaccacaacaacgatagtaa
tatggaaggaatgtagaaatattaataaaaagtgaaaatgagctataaaa
catcaagaaacaccattctaacacatgtttaagaaatcagtttattcaga
gcttatagacttctaagaattagtttcctcagctaatatgggtataaaaa
cattatcagtgagattctttgttcagttctgagcccatttttatggggtt
gtttgatttctgaagtcactcttgagtcttatatatgtgaattagttccc
tatctgataggatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113800316_113801068
seq2: B6Ng01-260J15.b_45_797 (reverse)

seq1  ATTCTGAATTTCAAAACACATTCCAAAACCACTTTAACAGCCTGACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATTTCAAAACACATTCCAAAACCACTTTAACAGCCTGACTTGG  50

seq1  AATAGAGAACAACATATATGCTACTGAGACAGAGCAGAGGGCTCCGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAACAACATATATGCTACTGAGACAGAGCAGAGGGCTCCGATGT  100

seq1  CAACCCATGAATAAATAATCAACTGTAACAGATGATACGACAATAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATGAATAAATAATCAACTGTAACAGATGATACGACAATAATGCA  150

seq1  CAATGAGAGGTGGGTTATCAAGTGTTGCTGAGCAAGCTGTGTGTGCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGAGGTGGGTTATCAAGTGTTGCTGAGCAAGCTGTGTGTGCACCT  200

seq1  ATAAAGTAGACACATTGGACAACTGCCCTGTTCTGTACTTCAAATTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAGACACATTGGACAACTGCCCTGTTCTGTACTTCAAATTCATA  250

seq1  CGGAACTAAAGACTGTTGGTTAAGACCCAAACCTGTAAATCCCCTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTAAAGACTGTTGGTTAAGACCCAAACCTGTAAATCCCCTGAAGA  300

seq1  GAATCACACAATCTGGCTTTTTTTTTCTTATAAATCAAAGCTAAGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACACAATCTGGCTTTTTTTTTCTTATAAATCAAAGCTAAGGTTTT  350

seq1  CACAGGTGTGAGGATTTACTCCATTCATCAAACTGTCTGATTTTGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTGAGGATTTACTCCATTCATCAAACTGTCTGATTTTGTCATT  400

seq1  CATAACCAAATATTAATTAACCAAAGTTTATTTCTTTGGGTCATGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCAAATATTAATTAACCAAAGTTTATTTCTTTGGGTCATGGAATT  450

seq1  GTTTTATTGTATAGGACTCAACTCATAGAAAAAAAAAAAAAACGAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTGTATAGGACTCAACTCATAGAAAAAAAAAAAAAACGAAAACT  500

seq1  AAGGAGAATATATCATATATTATTCACAGCAAGCATAGCCATTGACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATATATCATATATTATTCACAGCAAGCATAGCCATTGACAGAT  550

seq1  ATAACAACACATAGAACAAAAAAATTTTTTGATTATTGTCCTCTGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACACATAGAACAAAAAAATTTTTTGATTATTGTCCTCTGAGGAG  600

seq1  TTAACATCTTATATCCTAAGTTGTTTTTTATTGATACTCGTAATGATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCTTATATCCTAAGTTGTTTTTTATTGATACTCGTAATGATTTA  650

seq1  AAGTGCATAATTGAAAAGGAGTTAGAATAATTTTTCTTCAACAATACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATAATTGAAAAGGAGTTAGAATAATTTTTCTTCAACAATACATA  700

seq1  AAAATGGACTACTGATACACTGAATGATGACGAAAATTAACAAAATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGACTACTGATACACTGAATGATGACGAAAATTAACAAAATGGAA  750

seq1  TTC  753
      |||
seq2  TTC  753

seq1: chr14_113683671_113684753
seq2: B6Ng01-260J15.g_66_1130

seq1  GAATTCACTGGTATCAACATGAAGTCCATGACTAATAATTTGTTAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTATCAACATGAAGTCCATGACTAATAATTTGTTAAGGCT  50

seq1  TTGAGTGACCTTCCTTGCTGCTCATCATGATACACAACTTAGAACTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGACCTTCCTTGCTGCTCATCATGATACACAACTTAGAACTACAC  100

seq1  AGTAAAAGTCTGTAATGGAGAGATATATTTCATATATCACCTTTTAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGTCTGTAATGGAGAGATATATTTCATATATCACCTTTTAGTGT  150

seq1  AATGTCTTGAAAAGGGATTTCACTCCAATTTTTGCATTTGCACACACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTGAAAAGGGATTTCACTCCAATTTTTGCATTTGCACACACACT  200

seq1  ATATGTATAAAAATATATACATATACATTATATATGTATATAACACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATAAAAATATATACATATACATTATATATGTATATAACACTATA  250

seq1  CACATTATATAAATATATTATACATATTATAAATGTATATTTGGGTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATATAAATATATTATACATATTATAAATGTATATTTGGGTATTT  300

seq1  TTTTGCTACACACATTTTTTAAATTAATGAATGAATAAATTAATTTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTACACACATTTTTTAAATTAATGAATGAATAAATTAATTTCACC  350

seq1  CTCCATATTTTGTCTACCCTCCTACTGCTCCACTTCCCATACCTCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATTTTGTCTACCCTCCTACTGCTCCACTTCCCATACCTCCTCTC  400

seq1  CACCCCCTGTCTCCACATAGATGTCCCTACCTCCCATGCCACATGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTGTCTCCACATAGATGTCCCTACCTCCCATGCCACATGACCTC  450

seq1  TAAACTCCCTGGGGCCTCCAGATTCTTGAGTGCTAGGTGTTTCATCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCCTGGGGCCTCCAGATTCTTGAGTGCTAGGTGTTTCATCTTTG  500

seq1  AATGAACACAGACCTAGCAGTCCTCTGCTGTATGTGCACACATTGATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACACAGACCTAGCAGTCCTCTGCTGTATGTGCACACATTGATTGA  550

seq1  GTGAAGGTAACTTCCTTCTCACTGCTAGCGGAAAATGTAAAAAGAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGTAACTTCCTTCTCACTGCTAGCGGAAAATGTAAAAAGAAAGTT  600

seq1  TTGGGAAGCCTACTGGTGCTTTATAGATTGAGACAAAATAAAATTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCCTACTGGTGCTTTATAGATTGAGACAAAATAAAATTCTTAA  650

seq1  AATTGATGACATATTAAAGATAATATGGCAAGTTTGTTTCATTTAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGACATATTAAAGATAATATGGCAAGTTTGTTTCATTTAATTAT  700

seq1  TTTTATCATGGATTCATTTTGTTTTATTTTACTCCATTTAGTAGGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATGGATTCATTTTGTTTTATTTTACTCCATTTAGTAGGAGATG  750

seq1  AAACTTAGTACTCTCTATATACTTAACAATGACCACAACAACGATAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGTACTCTCTATATACTTAACAATGACCACAACAACGATAGTAA  800

seq1  TATGGAAGGAATGTAGAAATATTAATAAAAAGTGAAAATGAGCTATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGGAATGTAGAAATATTAATAAAAAGTGAAAATGAGCTATAAAA  850

seq1  CATCAAGAAACACCATTCTAACACATGTTTAAGAAATCAGTTTATTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAACACCATTCTAACACATGTTTAAGAAATCAGTTTATTCAGA  900

seq1  GCTTATAGACTTCTAAGAATTAGGTTTCCTCAGCTAATATGGGTATAAAA  950
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GCTTATAGACTTCTAAGAATTA-GTTTCCTCAGCTAATATGGGTAT-AAA  948

seq1  AACATTATCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAA  1000
      |||||||||| ||||| |||||||||||||||||||| |||||||||  |
seq2  AACATTATCA-GTGAG-ATTCTTTGTTCAGTTCTGAG-CCCATTTTT--A  993

seq1  TGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATG  1050
      ||||||||||||| |||||||||| |||  ||||||||   |||||||||
seq2  TGGGGTTGTTTGA-TTTCTGAAGT-CAC--TCTTGAGT--CTTATATATG  1037

seq1  TTGGATATTAGTCCCCTATCTGATTTAGGATAG  1083
      |  || |||||| ||||||||||  ||||||||
seq2  T--GA-ATTAGTTCCCTATCTGA--TAGGATAG  1065