BAC Information

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BAC

Clone NameB6Ng01-262H13
Chromosome14 (Build37)
Map Location 64,154,069 - 64,277,294
singlet/doubletdoublet
Overlap geneMtmr9
Upstream geneLOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh
Downstream geneXkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra, Kif13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262H13.bB6Ng01-262H13.g
ACCGA066879GA066880
length1,1241,104
definitionB6Ng01-262H13.b B6Ng01-262H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,276,174 - 64,277,294)(64,154,069 - 64,155,171)
sequence
gaattcagtaccttcatctctagctcttggcttccctctatcccctaaag
cagtggttctcaaccttcctaatgctagatcctttaatacagctcctcat
ggtgtggtgccaccccccaaccacagaactatcttcattgcttcttcata
tctgtaattttggtactgttatgaattgaaacgtaaatatttttaaagac
aggcttgcccaaggagttgcgaccctcaggaccactgtcctagggccagc
tgagtgtgcccagacagagactctgctctgatgtcaccactcctgttcct
gacctgagcttgaggcacaggcccctgctgggtttgccctggctacggct
cctatgcccctggatgtgagtgctgcccctgtgttaaactgctgccagtg
tcactgtgctaccaactctcacacctgtcactcgctggcagcctcttccc
ttgggttgtatgtggttcattgtcaaacttcacgaaatactctcttcttt
ccattttgacattttagtagatgctaaaagtttcttgccaatgccatttt
tacattatagaaaagaaattattattaatacaatctagtaaatgaaaaga
agcaccaagtaatctcaccttattctgttaggtaggacaaaatagactca
tatttcactagaattatgaatacaaatttagaaggaaatacaaaagttat
tttagaaaacagtattattctactaatgaagcaagctattttttgctagc
cttttttttttttttttttttttttatttattaaaagaaagtacactgta
gctttcttcagacactccagaagaagggagtcagatctttgttacagatg
ggttgtgagccacccttgtggttgctgggatttgaacctccagaccttta
ggaagagcagtcggggtgcttctacccacctggagccatcttcaccagcc
cttttgctagccttttaaagggttcatttttaggttatgtacttgggtgt
ttataccccaccgggaatgcaatgccgccagtcagagtaaactaacttga
tccccacatggttgactacgaaggttatgagctggccagtgtgtgtgatg
ggacctactttgtagaacagtact
gaattcagtgcctgttagaccagtctctttccagggaatggactggagac
gtctcaggaaaaccttcatcacatgttctcaccactcgcaaacagttcaa
ccccgcctgcggccagtttgtggttaagtttttgggaggcagaggaaatg
ttaggaggtggggcctggctggagtaaacaggtatttagggatgtgatta
ggggatagccctgcccccccggcctcttcttcctgtctctctgctgaggt
caggagcctctttctccccacactccctccatcatggtgttctacctcac
cacaagcccaaaggagtggaggcagcaggacggggactaaaacatcgaat
ctgtgaaccagtgcacatccttcctccattaacttgtttctccacagcag
ttgcccatctctggatctgttccaatagcctggtgactaagaggaaaacc
ttgcaggatacaccattaggctttgccaatctctgtacgccctaaatcta
aagcagtgacatctgaaacccacacagctttctagctttgttgcacccac
ccacctgaggtgttccccagtgcagccgttacatgcattacctgtgcctt
cctttatttgggactgcaggagctgatgaagcctgtcacccagggcagat
actactgtttggctcagaataaacagcaatgattttatattgatgccacc
agagggcacaaaactacatttggtctcagttgttaaacactgtgattaaa
aactgaggagcaatgccactgctggcaggacaggtggcctgctgactaaa
gagcacaattttaactctgtcacattgatccctctgtcatattcccaggg
gggaaggacaatgggaagagagttgtaactgtctattttaatatgggctg
cagaatagagcaatcaagagaggacaaagtgtcagacatgggtggcgcac
acctttaatccctgcactccagaggcagagcagtggattctttattagtt
tgaggccagtctggttctacagaaaaagtccagcctggcagacttaacat
agaaacctgtctcaaaaccaggggggggtgggacttccggggggtaagag
ggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_64276174_64277294
seq2: B6Ng01-262H13.b_41_1164 (reverse)

seq1  AGTACTGTTCTTACAGAGTTTAGTTCCCATCAC-CACACTGGGCAGCTCA  49
      |||||||||| |||| ||  ||| ||||||||| |||||||| |||||||
seq2  AGTACTGTTC-TACAAAG--TAGGTCCCATCACACACACTGGCCAGCTCA  47

seq1  TAACCCTCTGTAGTTCCAACCCTGTGGGGATC-AGTTAGTTACCTCTGGC  98
      ||||| || |||||  ||||| |||||||||| ||||||||  |||| | 
seq2  TAACCTTC-GTAGT--CAACCATGTGGGGATCAAGTTAGTTTACTCT-GA  93

seq1  CTGGCGGCATTTGCATT-CCGGT-GCGTAT-AACACCCATGTACATAA-C  144
      ||||||||| ||||||| ||||| | |||| |||||||| |||||||| |
seq2  CTGGCGGCA-TTGCATTCCCGGTGGGGTATAAACACCCAAGTACATAACC  142

seq1  TAAAAATGAACCC-TTAAAAGGCTAGCAAAAGGGCTGGTG-AGATGGCTC  192
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  TAAAAATGAACCCTTTAAAAGGCTAGCAAAAGGGCTGGTGAAGATGGCTC  192

seq1  --AGTGGGTAAGAGCA-CCCGACTGCTCTTCCT-AAGGTCTGGA-GTTCA  237
         |||||||  |||| |||||||||||||||| |||||||||| |||||
seq2  CAGGTGGGTAGAAGCACCCCGACTGCTCTTCCTAAAGGTCTGGAGGTTCA  242

seq1  AATCCCAGCAACCAC-ATGGTGGCTCACAA-CCATCTGTAAC-AAGATCT  284
      ||||||||||||||| | |||||||||||| ||||||||||| |||||||
seq2  AATCCCAGCAACCACAAGGGTGGCTCACAACCCATCTGTAACAAAGATCT  292

seq1  GACTCCC-TCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAT  333
      ||||||| |||||||||||||||||||| ||||||||||||||| | | |
seq2  GACTCCCTTCTTCTGGAGTGTCTGAAGAAAGCTACAGTGTACTTTCTTTT  342

seq1  AATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTAGCAAAAAA  383
      |||||||      |||||||||||||||||||||||||||||||||||||
seq2  AATAAAT------AAAAAAAAAAAAAAAAAAAAAAAAGGCTAGCAAAAAA  386

seq1  TAGCTTGCTTCATTAGTAGAATAATACTGTTTTCTAAAATAACTTTTGTA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCTTCATTAGTAGAATAATACTGTTTTCTAAAATAACTTTTGTA  436

seq1  TTTCCTTCTAAATTTGTATTCATAATTCTAGTGAAATATGAGTCTATTTT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTAAATTTGTATTCATAATTCTAGTGAAATATGAGTCTATTTT  486

seq1  GTCCTACCTAACAGAATAAGGTGAGATTACTTGGTGCTTCTTTTCATTTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACCTAACAGAATAAGGTGAGATTACTTGGTGCTTCTTTTCATTTA  536

seq1  CTAGATTGTATTAATAATAATTTCTTTTCTATAATGTAAAAATGGCATTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGTATTAATAATAATTTCTTTTCTATAATGTAAAAATGGCATTG  586

seq1  GCAAGAAACTTTTAGCATCTACTAAAATGTCAAAATGGAAAGAAGAGAGT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAACTTTTAGCATCTACTAAAATGTCAAAATGGAAAGAAGAGAGT  636

seq1  ATTTCGTGAAGTTTGACAATGAACCACATACAACCCAAGGGAAGAGGCTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTGAAGTTTGACAATGAACCACATACAACCCAAGGGAAGAGGCTG  686

seq1  CCAGCGAGTGACAGGTGTGAGAGTTGGTAGCACAGTGACACTGGCAGCAG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAGTGACAGGTGTGAGAGTTGGTAGCACAGTGACACTGGCAGCAG  736

seq1  TTTAACACAGGGGCAGCACTCACATCCAGGGGCATAGGAGCCGTAGCCAG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACAGGGGCAGCACTCACATCCAGGGGCATAGGAGCCGTAGCCAG  786

seq1  GGCAAACCCAGCAGGGGCCTGTGCCTCAAGCTCAGGTCAGGAACAGGAGT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCCAGCAGGGGCCTGTGCCTCAAGCTCAGGTCAGGAACAGGAGT  836

seq1  GGTGACATCAGAGCAGAGTCTCTGTCTGGGCACACTCAGCTGGCCCTAGG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATCAGAGCAGAGTCTCTGTCTGGGCACACTCAGCTGGCCCTAGG  886

seq1  ACAGTGGTCCTGAGGGTCGCAACTCCTTGGGCAAGCCTGTCTTTAAAAAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTCCTGAGGGTCGCAACTCCTTGGGCAAGCCTGTCTTTAAAAAT  936

seq1  ATTTACGTTTCAATTCATAACAGTACCAAAATTACAGATATGAAGAAGCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACGTTTCAATTCATAACAGTACCAAAATTACAGATATGAAGAAGCA  986

seq1  ATGAAGATAGTTCTGTGGTTGGGGGGTGGCACCACACCATGAGGAGCTGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATAGTTCTGTGGTTGGGGGGTGGCACCACACCATGAGGAGCTGT  1036

seq1  ATTAAAGGATCTAGCATTAGGAAGGTTGAGAACCACTGCTTTAGGGGATA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGATCTAGCATTAGGAAGGTTGAGAACCACTGCTTTAGGGGATA  1086

seq1  GAGGGAAGCCAAGAGCTAGAGATGAAGGTACTGAATTC  1121
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGCCAAGAGCTAGAGATGAAGGTACTGAATTC  1124

seq1: chr14_64154069_64155171
seq2: B6Ng01-262H13.g_64_1167

seq1  GAATTCAGTGCCTGTTAGACCAGTCTCTTTCCAGGGAATGGACTGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCTGTTAGACCAGTCTCTTTCCAGGGAATGGACTGGAGAC  50

seq1  GTCTCAGGAAAACCTTCATCACATGTTCTCACCACTCGCAAACAGTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGAAAACCTTCATCACATGTTCTCACCACTCGCAAACAGTTCAA  100

seq1  CCCCGCCTGCGGCCAGTTTGTGGTTAAGTTTTTGGGAGGCAGAGGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCTGCGGCCAGTTTGTGGTTAAGTTTTTGGGAGGCAGAGGAAATG  150

seq1  TTAGGAGGTGGGGCCTGGCTGGAGTAAACAGGTATTTAGGGATGTGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGTGGGGCCTGGCTGGAGTAAACAGGTATTTAGGGATGTGATTA  200

seq1  GGGGATAGCCCTGCCCCCCCGGCCTCTTCTTCCTGTCTCTCTGCTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGCCCTGCCCCCCCGGCCTCTTCTTCCTGTCTCTCTGCTGAGGT  250

seq1  CAGGAGCCTCTTTCTCCCCACACTCCCTCCATCATGGTGTTCTACCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCTCTTTCTCCCCACACTCCCTCCATCATGGTGTTCTACCTCAC  300

seq1  CACAAGCCCAAAGGAGTGGAGGCAGCAGGACGGGGACTAAAACATCGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCCAAAGGAGTGGAGGCAGCAGGACGGGGACTAAAACATCGAAT  350

seq1  CTGTGAACCAGTGCACATCCTTCCTCCATTAACTTGTTTCTCCACAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACCAGTGCACATCCTTCCTCCATTAACTTGTTTCTCCACAGCAG  400

seq1  TTGCCCATCTCTGGATCTGTTCCAATAGCCTGGTGACTAAGAGGAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATCTCTGGATCTGTTCCAATAGCCTGGTGACTAAGAGGAAAACC  450

seq1  TTGCAGGATACACCATTAGGCTTTGCCAATCTCTGTACGCCCTAAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGATACACCATTAGGCTTTGCCAATCTCTGTACGCCCTAAATCTA  500

seq1  AAGCAGTGACATCTGAAACCCACACAGCTTTCTAGCTTTGTTGCACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGACATCTGAAACCCACACAGCTTTCTAGCTTTGTTGCACCCAC  550

seq1  CCACCTGAGGTGTTCCCCAGTGCAGCCGTTACATGCATTACCTGTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAGGTGTTCCCCAGTGCAGCCGTTACATGCATTACCTGTGCCTT  600

seq1  CCTTTATTTGGGACTGCAGGAGCTGATGAAGCCTGTCACCCAGGGCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTGGGACTGCAGGAGCTGATGAAGCCTGTCACCCAGGGCAGAT  650

seq1  ACTACTGTTTGGCTCAGAATAAACAGCAATGATTTTATATTGATGCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTTTGGCTCAGAATAAACAGCAATGATTTTATATTGATGCCACC  700

seq1  AGAGGGCACAAAACTACATTTGGTCTCAGTTGTTAAACACTGTGATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCACAAAACTACATTTGGTCTCAGTTGTTAAACACTGTGATTAAA  750

seq1  AACTGAGGAGCAATGCCACTGCTGGCAGGACAGGTGGCCTGCTGACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGAGCAATGCCACTGCTGGCAGGACAGGTGGCCTGCTGACTAAA  800

seq1  GAGCACAATTTTAACTCTGTCACATTGATCCCTCTGTCATATTCCCA-GG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGCACAATTTTAACTCTGTCACATTGATCCCTCTGTCATATTCCCAGGG  850

seq1  GGGAAGGACAAT-GGAAGAGAGTTGTAACTGTCTAATTTAATATGGGCTG  898
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GGGAAGGACAATGGGAAGAGAGTTGTAACTGTCTATTTTAATATGGGCTG  900

seq1  CAGAATAAGAAGCAAATCAAGAGAGGACAAAGTGTCAGACAT-GGTGGCG  947
      |||||||   ||| |||||||||||||||||||||||||||| |||||||
seq2  CAGAATA--GAGC-AATCAAGAGAGGACAAAGTGTCAGACATGGGTGGCG  947

seq1  CACACCTTTAATCCCTGCACTCCAGAGGCAGAGGCAGGTGGA-TCTTTAT  996
      |||||||||||||||||||||||||||||||| ||| ||||| |||||||
seq2  CACACCTTTAATCCCTGCACTCCAGAGGCAGA-GCA-GTGGATTCTTTAT  995

seq1  TAGTTTGAGGCCAGCCTGG-TCTACAG-AAAAGTCCAGGCCTGCCAGGAC  1044
      |||||||||||||| |||| ||||||| ||||||||| ||||| || |||
seq2  TAGTTTGAGGCCAGTCTGGTTCTACAGAAAAAGTCCA-GCCTGGCA-GAC  1043

seq1  TAAACATAGAAACCCTGTCTCAAAACCAAGGGGGGGTGGGACT--CGGGG  1092
      | |||||||||| ||||||||||||||| ||||||||||||||  |||||
seq2  TTAACATAGAAA-CCTGTCTCAAAACCAGGGGGGGGTGGGACTTCCGGGG  1092

seq1  GG-AAGAGGGGA  1103
      || |||||||||
seq2  GGTAAGAGGGGA  1104