BAC Information

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BAC

Clone NameB6Ng01-264H11
Chromosome14 (Build37)
Map Location 56,499,564 - 56,500,682
singlet/doubletsinglet
Overlap geneCbln3
Upstream geneBcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046
Downstream gene9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264H11.bB6Ng01-264H11.g
ACCGA068364GA068365
length1,125990
definitionB6Ng01-264H11.b B6Ng01-264H11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagaaggttccagctagcctggtgtacgcaatgaaaaattagag
tccctgtctcaaacatagtgggaggtggggtccaacacccaaagttgtcc
cccctctctctctctctctctctctctctcacacacacacacacacacac
acgtcccaggtgcatgcacatggaaaatatgacaaaaaggtaagattgtg
agattgtttccttgcctgtcctggcttggtgtggccaagtgtgactccat
tctggcgatgagatgcaatcagaaatgtgtgtaggcagctgtcagcggtc
ggaaaacctttcaaggaaggagctgtgttctttcttctctccctttttcc
agcgctgctgggatgtaatgctgacctgcacgaagccatcttgggccatg
aggcggcatgccagagaggcatcccaaaagggaagactgggctctgtggt
tctaagcagctgtttatcctgaactccccagctgcagactcttccatgtg
agacagaaatattatcttatcttgtttaaactattcttcctggccacaaa
gtaaggacaaatgctgaaggaaagtgctgcccctccccctcttgtctact
ccctacccgcctaccccagtgctggggttcaaacccagtgcttcatgcgt
attagcgtctgcctctgagtgacacctccatccttatttctttctttgtt
ctgtctctgtctctctgtctttctttttggacaggttttactatggcttg
cctgaaactcacagagatccacctgcctctgtctcctgaatgaacaccta
gatttttattttaaaaccataaacttgccgggtgtggtggcacacgcctt
taatcccagcactcaggaggcagaggcaggcggaattctgagttcgaggg
ccagcttggtctacaaagtgagttcaagacagccagggctatacagagaa
accctgtctcaaaaatcaaaaaaccaaacaaaaacaaaaaaccacaaact
tgcccttgctatttaattcagcacgagtactttattattataacacttta
aaaacgttgacttgctatgccagctttgaatttaatttctcatcagcatg
ctgtagtccttgcagtccatgtttc
gaattccatcaccaggagatttccaacagagagtagctgataagattagg
atgataaattctttgctcagtggttgagtcatctgatgattttaaactaa
gattgtcttggtgttttccatctggggcaactcagatgggccagagggaa
agaatttagccagggcagaattcgaccagactttggaatgggagattggt
caaaggacacatcgcatcagagcatgggttggtgagagcacccacagcta
gccacgggaaccagggaagtgccatcagctttgcagtaagctagccgtgg
aaattactgaagcaagcaattactgaggcaagactgaagttgccgatgct
tagccagtttagcgtggattgttttattaactacatgctacatagtatta
ttccgttgtgtaaaagaatgcattttctgatccattcttctgttgtggat
catatgggttgttatcagcatctggctatcacagataaggcatctgcaaa
cataatggagcccgtgcctctgtggtagggtgaggcatcttttgggtata
tgcccacaagctaggtcttcaggtagaactatttccagttttctgaggaa
cagccagattgatttccagaataatagtgccagtttgcaatcccaccagc
aatggaggagtgttccccttgctccactttctcaccagcatttgctgtcc
cttgaggtttatcttagccagcctgattggtgtgaggtgggatctcaggt
cattttgatttgcatttccctgattactagggatgttgaacatttcttta
ggtgctttttgaccattcaagattcctatgttaagaattctttgtttagc
tgtgtaccccattttaaaattgggtttttattttagtctaacttcttgat
ttctttatatattttggatattagccccataggtccaggataatgaatgg
aaataagcagcagctggggatgggtttggggtgggggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56499564_56500682
seq2: B6Ng01-264H11.b_44_1168

seq1  GAATTCCAGAAGGTTCCAGCTAGCCTGGTGTACGCAATGAAAAATTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGGTTCCAGCTAGCCTGGTGTACGCAATGAAAAATTAGAG  50

seq1  TCCCTGTCTCAAACATAGTGGGAGGTGGGGTCCAACACCCAAAGTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCTCAAACATAGTGGGAGGTGGGGTCCAACACCCAAAGTTGTCC  100

seq1  CCCCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAC  150

seq1  ACGTCCCAGGTGCATGCACATGGAAAATATGACAAAAAGGTAAGATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCAGGTGCATGCACATGGAAAATATGACAAAAAGGTAAGATTGTG  200

seq1  AGATTGTTTCCTTGCCTGTCCTGGCTTGGTGTGGCCAAGTGTGACTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTCCTTGCCTGTCCTGGCTTGGTGTGGCCAAGTGTGACTCCAT  250

seq1  TCTGGCGATGAGATGCAATCAGAAATGTGTGTAGGCAGCTGTCAGCGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGATGAGATGCAATCAGAAATGTGTGTAGGCAGCTGTCAGCGGTC  300

seq1  GGAAAACCTTTCAAGGAAGGAGCTGTGTTCTTTCTTCTCTCCCTTTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCTTTCAAGGAAGGAGCTGTGTTCTTTCTTCTCTCCCTTTTTCC  350

seq1  AGCGCTGCTGGGATGTAATGCTGACCTGCACGAAGCCATCTTGGGCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGCTGGGATGTAATGCTGACCTGCACGAAGCCATCTTGGGCCATG  400

seq1  AGGCGGCATGCCAGAGAGGCATCCCAAAAGGGAAGACTGGGCTCTGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCATGCCAGAGAGGCATCCCAAAAGGGAAGACTGGGCTCTGTGGT  450

seq1  TCTAAGCAGCTGTTTATCCTGAACTCCCCAGCTGCAGACTCTTCCATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAGCTGTTTATCCTGAACTCCCCAGCTGCAGACTCTTCCATGTG  500

seq1  AGACAGAAATATTATCTTATCTTGTTTAAACTATTCTTCCTGGCCACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAATATTATCTTATCTTGTTTAAACTATTCTTCCTGGCCACAAA  550

seq1  GTAAGGACAAATGCTGAAGGAAAGTGCTGCCCCTCCCCCTCTTGTCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACAAATGCTGAAGGAAAGTGCTGCCCCTCCCCCTCTTGTCTACT  600

seq1  CCCTACCCGCCTACCCCAGTGCTGGGGTTCAAACCCAGTGCTTCATGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCCGCCTACCCCAGTGCTGGGGTTCAAACCCAGTGCTTCATGCGT  650

seq1  ATTAGCGTCTGCCTCTGAGTGACACCTCCATCCTTATTTCTTTCTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCGTCTGCCTCTGAGTGACACCTCCATCCTTATTTCTTTCTTTGTT  700

seq1  CTGTCTCTGTCTCTCTGTCTTTC-TTTTGGACAGGTTTTACTATGGCTTG  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGTCTCTGTCTCTCTGTCTTTCTTTTTGGACAGGTTTTACTATGGCTTG  750

seq1  CCTGAAACTCACAGAGATCCACCTGCCTCTGTCTCCTGAATGAACACCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCACAGAGATCCACCTGCCTCTGTCTCCTGAATGAACACCTA  800

seq1  GATTTTTATTTTAAAACCATAAACTTGCCGGGTGTGGTGGCACACGCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATTTTAAAACCATAAACTTGCCGGGTGTGGTGGCACACGCCTT  850

seq1  TAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA-GG  898
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGAATTCTGAGTTCGAGGG  900

seq1  CCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGA  948
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  CCAGCTTGGTCTACAAAGTGAGTT-CAAGACAGCCAGGGCTATACAGAGA  949

seq1  AACCCTGTCTCAAAAAACCAAAAACCAAACCAAAACAAAAAACCACAAAC  998
      |||||||||||||||| | ||||||||||| |||||||||||||||||||
seq2  AACCCTGTCTCAAAAATCAAAAAACCAAACAAAAACAAAAAACCACAAAC  999

seq1  TTGCCC-TGGTATTT-ATTTAGCACGAGTACTTTA-TATTATAGCACTTT  1045
      |||||| || ||||| ||| ||||||||||||||| ||||||| ||||||
seq2  TTGCCCTTGCTATTTAATTCAGCACGAGTACTTTATTATTATAACACTTT  1049

seq1  AAAAACGTTGAC-TGCTATGCCCAGCTTTGAATTT-ATTTCTCTTCAGCA  1093
      |||||||||||| ||||||| |||||||||||||| ||||||| ||||||
seq2  AAAAACGTTGACTTGCTATG-CCAGCTTTGAATTTAATTTCTCATCAGCA  1098

seq1  TGCTGTAGTCC-TGCAGTCCCTGTTTC  1119
      ||||||||||| |||||||| ||||||
seq2  TGCTGTAGTCCTTGCAGTCCATGTTTC  1125