BAC Information

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BAC

Clone NameB6Ng01-267L10
Chromosome16 (Build37)14 (Build37)
Map Location 25,706,070 - 25,707,253104,209,806 - 104,210,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLpp, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267L10.bB6Ng01-267L10.g
ACCGA070762GA070763
length1,1771,046
definitionB6Ng01-267L10.b B6Ng01-267L10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,706,070 - 25,707,253)(104,209,806 - 104,210,811)
sequence
gaattctatgttcctttttgtgaactgcaagagattttattctaagagtc
agtgtgaagaagccagactttagcttttgcattttatttggaatgcctgg
gtaagaggatcatgtacccatttttgtaggtcttcaagctataatccatt
agtcacttctgtagtgatttgagcccttgcctaggagcacggacaatgcc
agagttaagtacccagaggattgggagactgaaaataatgttcctgattc
ccttttaactacttttagcgtataggaacaaagtgcaagtggacacagtg
taaaaatctttaaagccatttagagaaagtgccaatttagcccaggttgt
tcttctctgtcttacacaaagaaacaagtagaaaaaaaatcagtttttct
tagacccagcaactactgacttctggacttctttgaagtatttaatcttt
ggagacaaagatagtgcctctgactaatatctgaaaatatcagtgtcact
ctttgaatgcttcattcaagctctgtttcacagtaacctttttaaaagtg
gaaatggaatctggaagctgtgcagagctactgtgaaccacaagagttca
tgctacctgcatcctggttcatcagttgagaaagtgatgcaggacatccc
agaggagtagatttatagaaatgcaatcctaacacatcttagaggccata
atctgaacttctagtgttgatgttatcctctgaagtcctcagagcctcat
tgcattagaatgagcaaagtgtctgttccaggcctgggtgttttacttca
ttctttctttcacccataaattacttcaacaataagattcctgtattttt
caacacaaaattaggttcattggctatagcagcaaacattagctaccatc
tcttaaatgtcttgcttgtttacagctcaatttcatcttcaaaacggttt
aatgacctaaaacaaagatccattaaatgagaggttaagtcacaagtcta
accctctgtatagctttgaacttcaaacttactagacctaactgacttct
aagaccatattccttacctcctccacacaccataacatctggctaaaaga
acaacagggttgaaggcatgagcagccactatgggtcaggcactcagagg
tattcatgcagcttgcatcattattga

gaattctccacgtgagggaaaatagaatcctcatcaggggcggattgggg
gtggggcatgtctatgttgggaggtgagtacaggaacaggagagatcagg
ccaggggaggatggagggagagagtgctgggaaagacaaatgaatgggcg
gagcctccatgggataagctagaaacctcatgcgctggaaacttatagga
atctacaaggatgacccaagcagtgggcggtacagagaccgaactgttct
taatgtgccgcagtaaaaatcaggcatccactttgagaagcacttgggaa
ttaatataggaaagaaatacttatccaaggaccagaaatttccacttgca
gagaatttctcatgggatcacgatacaaagaccagagtgttcacaggcag
cattatttatttcagtccccaaagggaaacaactcaaactccagtagcaa
tattttaaattactagaccatatgatatgtcaataaaatggaacaagtgc
tctccacaagttgatcaagctcctcatgattaaaattttgattttgagtg
ctgccttgcatatgcaatgctgggtaggttgttttgaacatgtaggatgc
ttgacagcatcctctaaacatcagtagcatcctttcctagtgtgagaacg
aacacatttccaaacagcagcaaatacctcttgagagacatggcagggga
ctaactctgttggaaactgctgggcacagtatgattctggtaatataaag
ctcaaattctgtgggaagccacatgtgccgttgcagggtggcgctgggtt
accactggccaccatgcatacataggcagtaaagttttttttgccaagat
gaggttttgagaattaacccaatcacatgagagacaagtttactcaatca
gatgagagactaggttaacctaatcagatgagagacaagttaactattcg
gatgagaagacaagttaaccaattcgatgaacgacatgttacccaatcca
gatggtgagacttgcaaatgagtgggaacgcataaaccatgcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25706070_25707253
seq2: B6Ng01-267L10.b_44_1220

seq1  GAATTCTATGTTCCTTTTTGTGAACTGCAAGAGATTTTATTCTAAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTCCTTTTTGTGAACTGCAAGAGATTTTATTCTAAGAGTC  50

seq1  AGTGTGAAGAAGCCAGACTTTAGCTTTTGCATTTTATTTGGAATGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAAGAAGCCAGACTTTAGCTTTTGCATTTTATTTGGAATGCCTGG  100

seq1  GTAAGAGGATCATGTACCCATTTTTGTAGGTCTTCAAGCTATAATCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGATCATGTACCCATTTTTGTAGGTCTTCAAGCTATAATCCATT  150

seq1  AGTCACTTCTGTAGTGATTTGAGCCCTTGCCTAGGAGCACGGACAATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTCTGTAGTGATTTGAGCCCTTGCCTAGGAGCACGGACAATGCC  200

seq1  AGAGTTAAGTACCCAGAGGATTGGGAGACTGAAAATAATGTTCCTGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAGTACCCAGAGGATTGGGAGACTGAAAATAATGTTCCTGATTC  250

seq1  CCTTTTAACTACTTTTAGCGTATAGGAACAAAGTGCAAGTGGACACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAACTACTTTTAGCGTATAGGAACAAAGTGCAAGTGGACACAGTG  300

seq1  TAAAAATCTTTAAAGCCATTTAGAGAAAGTGCCAATTTAGCCCAGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTTTAAAGCCATTTAGAGAAAGTGCCAATTTAGCCCAGGTTGT  350

seq1  TCTTCTCTGTCTTACACAAAGAAACAAGTAGAAAAAAAATCAGTTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGTCTTACACAAAGAAACAAGTAGAAAAAAAATCAGTTTTTCT  400

seq1  TAGACCCAGCAACTACTGACTTCTGGACTTCTTTGAAGTATTTAATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCAGCAACTACTGACTTCTGGACTTCTTTGAAGTATTTAATCTTT  450

seq1  GGAGACAAAGATAGTGCCTCTGACTAATATCTGAAAATATCAGTGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAAGATAGTGCCTCTGACTAATATCTGAAAATATCAGTGTCACT  500

seq1  CTTTGAATGCTTCATTCAAGCTCTGTTTCACAGTAACCTTTTTAAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGCTTCATTCAAGCTCTGTTTCACAGTAACCTTTTTAAAAGTG  550

seq1  GAAATGGAATCTGGAAGCTGTGCAGAGCTACTGTGAACCACAAGAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAATCTGGAAGCTGTGCAGAGCTACTGTGAACCACAAGAGTTCA  600

seq1  TGCTACCTGCATCCTGGTTCATCAGTTGAGAAAGTGATGCAGGACATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCTGCATCCTGGTTCATCAGTTGAGAAAGTGATGCAGGACATCCC  650

seq1  AGAGGAGTAGATTTATAGAAATGCAATCCTAACACATCTTAGAGGCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTAGATTTATAGAAATGCAATCCTAACACATCTTAGAGGCCATA  700

seq1  ATCTGAACTTCTAGTGTTGATGTTATCCTCTGAAGTCCTCAGAGCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTTCTAGTGTTGATGTTATCCTCTGAAGTCCTCAGAGCCTCAT  750

seq1  TGCATTAGAATGAGCAAAGTGTCTGTTCCAGGCCTGGGTGTTTTACTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGAATGAGCAAAGTGTCTGTTCCAGGCCTGGGTGTTTTACTTCA  800

seq1  TTCTTTCTTTCACCCATAAATTACTTCAACAATAAGATTCCTGTATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCACCCATAAATTACTTCAACAATAAGATTCCTGTATTTTT  850

seq1  CAAACACAAAATTAGGTTCATTGGCTATAGCAGCAAACATTAGCTACCAT  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AACACAAAATTAGGTTCATTGGCTATAGCAGCAAACATTAGCTACCAT  899

seq1  CTCTTAAATGTCTTGCTTGTTTACAGCTCAA-TTCATCTTCAAAACGGTT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTTAAATGTCTTGCTTGTTTACAGCTCAATTTCATCTTCAAAACGGTT  949

seq1  TAATGACCTAAAACAAAGATCCATTAAATGAGAGGTTAAGTCACAAGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCTAAAACAAAGATCCATTAAATGAGAGGTTAAGTCACAAGTCT  999

seq1  AACCCTCTGTATAGCTTTGAACTTCAAACTTACTTAGACCTAACTGACTT  1049
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACCCTCTGTATAGCTTTGAACTTCAAACTTAC-TAGACCTAACTGACTT  1048

seq1  CTAAGACCATATTCCTTACCTCCTCCACCACACCATAACATCTGGCCTTA  1099
      ||||||||||||||||||||||||||| ||||||||||||||||||  ||
seq2  CTAAGACCATATTCCTTACCTCCTCCA-CACACCATAACATCTGGC--TA  1095

seq1  AAAG-ACACAGGGGTTGAGGGCATGAGCAGCAACTAT-GGTCCAGCACTC  1147
      |||| |||   ||||||| |||||||||||| ||||| ||||  ||||||
seq2  AAAGAACAACAGGGTTGAAGGCATGAGCAGCCACTATGGGTCAGGCACTC  1145

seq1  AGAAGTGTTATTCATGCAGCCTGGCATCATTTATTGA  1184
      |||   | ||||||||||| || |||||| |||||||
seq2  AGA---GGTATTCATGCAG-CTTGCATCA-TTATTGA  1177


seq1: chr14_104209806_104210811
seq2: B6Ng01-267L10.g_97_1110 (reverse)

seq1  TTATGCATGGGTTATGCGTACCACCTCATTTGCAAGTCTCA-CATCT-GA  48
      |||||||||| |||||||| ||  ||||||||||||||||| ||||| ||
seq2  TTATGCATGGTTTATGCGTTCCCACTCATTTGCAAGTCTCACCATCTGGA  50

seq1  TTGGTTAACATGTCTCTCATCTGATTGGTTAACTTGTC-TCTCATCCGAT  97
      |||| |||||||||  |||||  ||||||||||||||| |||||||||| 
seq2  TTGGGTAACATGTCGTTCATCGAATTGGTTAACTTGTCTTCTCATCCGAA  100

seq1  TGGTTAACTTGTCTCTCATCTGATT-GGTTAA-CTTGTCTCTCATCTGAT  145
      | ||||||||||||||||||||||| |||||| || ||||||||||||||
seq2  TAGTTAACTTGTCTCTCATCTGATTAGGTTAACCTAGTCTCTCATCTGAT  150

seq1  TG-GTTAACTTGTCTCTCATCTGATT-GGTTAATTCTCAAAACCTCATCT  193
      || || |||||||||||||| ||||| |||||||||||||||||||||||
seq2  TGAGTAAACTTGTCTCTCATGTGATTGGGTTAATTCTCAAAACCTCATCT  200

seq1  TGGC-AAAAAAACTTTACTGCCTATGTATGCATGGTGGCCAGTGGTAA-C  241
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGCAAAAAAAACTTTACTGCCTATGTATGCATGGTGGCCAGTGGTAACC  250

seq1  CAGCGCCACCCTGCAACGGCACATGTGGCTTCCCACAGAATTTGAGCTTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCACCCTGCAACGGCACATGTGGCTTCCCACAGAATTTGAGCTTT  300

seq1  ATATTACCAGAATCATACTGTTGCCCAGCAGTTTCCAACAGAGTTAGTCC  341
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATTACCAGAATCATACTG-TGCCCAGCAGTTTCCAACAGAGTTAGTCC  349

seq1  CCTGCCATGTCTCTCAAGAGGTATTTGCTGCTGTTTGGAAATGTGTTCGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGTCTCTCAAGAGGTATTTGCTGCTGTTTGGAAATGTGTTCGT  399

seq1  TCTCACACTAGGAAAGGATGCTACTGATGTTTAGAGGATGCTGTCAAGCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACTAGGAAAGGATGCTACTGATGTTTAGAGGATGCTGTCAAGCA  449

seq1  TCCTACATGTTCAAAACAACCTACCCAGCATTGCATATGCAAGGCAGCAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATGTTCAAAACAACCTACCCAGCATTGCATATGCAAGGCAGCAC  499

seq1  TCAAAATCAAAATTTTAATCATGAGGAGCTTGATCAACTTGTGGAGAGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCAAAATTTTAATCATGAGGAGCTTGATCAACTTGTGGAGAGCA  549

seq1  CTTGTTCCATTTTATTGACATATCATATGGTCTAGTAATTTAAAATATTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCATTTTATTGACATATCATATGGTCTAGTAATTTAAAATATTG  599

seq1  CTACTGGAGTTTGAGTTGTTTCCCTTTGGGGACTGAAATAAATAATGCTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGAGTTTGAGTTGTTTCCCTTTGGGGACTGAAATAAATAATGCTG  649

seq1  CCTGTGAACACTCTGGTCTTTGTATCGTGATCCCATGAGAAATTCTCTGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAACACTCTGGTCTTTGTATCGTGATCCCATGAGAAATTCTCTGC  699

seq1  AAGTGGAAATTTCTGGTCCTTGGATAAGTATTTCTTTCCTATATTAATTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAATTTCTGGTCCTTGGATAAGTATTTCTTTCCTATATTAATTC  749

seq1  CCAAGTGCTTCTCAAAGTGGATGCCTGATTTTTACTGCGGCACATTAAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTTCTCAAAGTGGATGCCTGATTTTTACTGCGGCACATTAAGA  799

seq1  ACAGTTCGGTCTCTGTACCGCCCACTGCTTGGGTCATCCTTGTAGATTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCGGTCTCTGTACCGCCCACTGCTTGGGTCATCCTTGTAGATTCC  849

seq1  TATAAGTTTCCAGCGCATGAGGTTTCTAGCTTATCCCATGGAGGCTCCGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTTCCAGCGCATGAGGTTTCTAGCTTATCCCATGGAGGCTCCGC  899

seq1  CCATTCATTTGTCTTTCCCAGCACTCTCTCCCTCCATCCTCCCCTGGCCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATTTGTCTTTCCCAGCACTCTCTCCCTCCATCCTCCCCTGGCCT  949

seq1  GATCTCTCCTGTTCCTGTACTCACCTCCCAACATAGACATGCCCCACCCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCCTGTTCCTGTACTCACCTCCCAACATAGACATGCCCCACCCC  999

seq1  CAATCCGCCCCTGAT  1006
      |||||||||||||||
seq2  CAATCCGCCCCTGAT  1014


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