BAC Information

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BAC

Clone NameB6Ng01-267O12
Chromosome14 (Build37)
Map Location 29,180,971 - 29,240,178
singlet/doubletdoublet
Overlap geneErc2, LOC100040206
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneWnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267O12.bB6Ng01-267O12.g
ACCGA070906GA070907
length1,1351,108
definitionB6Ng01-267O12.b B6Ng01-267O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,239,015 - 29,240,178)(29,180,971 - 29,182,082)
sequence
gaattcagccaagagatgaggagagcccagggatggagagcaatggcatt
ctgatagcgtcacatggactcctggttatgtaaactataaaattctaact
cctctccttttgaaattaagccaatttgagttgagtacttgtcacttgaa
gccaagagtttcagctaacagaacaagttacaatttaattgagtttcagg
atatcatctgggagaaggctgtgtgtgtgtgttctgctctgtgtacactg
cccacagagagatgaacttcccaggctagtggtgagcaccaaactcgctg
gctgagctgcctcttcttttcagctgcacctttttttttttttaatagag
ctcatctttctctagcttagacatcccaaatgacaaactattggaaggca
tttctctctatgctaatacctgtgtttgagtggtatttttttcattgttg
gtttaaaaaaaatgatcatgatgtgatagcaaatgaatgttggcgaatta
ccaagtgacaggcgtaaaattttatgaacatgcacattccagaggaatgt
ggaaataagccatctactgtagtccactttggcagaactattacaaaaat
ataagtttggcatatattgtaattcatttaaagatgcttaaaaactcatc
catcagccttgtacagaaggtcaaagaaacacatgaatcccaaattaaca
gtgtacaaagcagaggcctaaaggtccgctctggctatcacaaaggatgc
acactagaagagaacagtggtttgaaaaacagagtatctataaccttaaa
aagaaacaataaccatccattagcattaaaaaacaaaaacaaaaacaaaa
aaaggcaggtagttgtcctacaataaccatctcaattttgtccctttaag
aagattcagctaaccaaaagcaaacactattgcacatgccagcaagattt
gctgaaggaccctaatatagctgtctcgtgtgaggctatgccgggctagc
aaacacagagtgatgctcccagtcagctatgatgatcacaggccccatga
gagctagagaagtaccagagcgaggggtctgcactatagtgaaacagcat
tgtgactaaccagtacccgagctcggttctctagc
gaattccttaccattcccagataatggtgtgtttttttcctcttcttaaa
atagtattcattgctttttccaggtccttgtgatgatggcttgccattat
ccaaaaatgccctattatcttcctgaatccttctctgaaagtcggcttag
aagtggttcctcaaagcttcctctaagtttttctagctggccttatcttc
ctctcctgacctgttgaagctctcaaagtcctggttcaattttctgagag
tttagaagccagtatttctcggagcttccttttcattctttgagtctctc
tcttgtgatcttttgtgggtttttatggtgaggcaatgccctgtccctta
tccttctggctcttctctagagaggactacaagacaacatatctactgtt
ccttcagcagtgcagagagactaggcatggacactgttacgtgtcttcct
agaatcttcacaatagtcttgagcctgaagactgatgttagcttcgtctg
taagaggcagaggctgaagggtcttctgaagtgtcttctccatgcagcat
gaaccaggtggaagaactttgacctctgtgctctgtggctttttgccacc
cccactacttgcaaaggagacttgcgcccaagtcttgggtacaaatgaga
gatggtaaagccttttgttcccacctcccttagtgctggaagagttggag
agttgagtgttgatgttgggttttaaagctttccatgtttatgtgagtgc
tgtccacatcccattcatagccagcctgatgttggcatggtagatgtaac
tccatccctcccacctccctccttagaaacctgagcctcttctgtttgtt
ttttagatattttaatccctttttggaacaaaatagagtataagcaaaca
aaactgaatattttacattttttaatagcagcaaacactttcataatatt
tttgaaaattaacttttttgtcactggtggcttgtggccttgggaccaca
ctgtcacttctggcctgggttactagcatatttaaggcagcaggtttggg
gacataatggtagccaatagcctagcatcatctgtgatgtagactttcca
tggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29239015_29240178
seq2: B6Ng01-267O12.b_49_1183 (reverse)

seq1  GCTAGAGACACGAGCTCCGGGGGTACTGGTTAGTTCACATTGCTGTTTCA  50
      ||||||||  |||||||   ||||||||||||| ||||| ||||||||||
seq2  GCTAGAGAACCGAGCTC---GGGTACTGGTTAG-TCACAATGCTGTTTCA  46

seq1  CCTATAGGGTTGCAGACCCCTTCCGCTCCTTGGGTACTTTCTCTAGCTCC  100
       ||||||   |||||||||||  |||||    ||||| ||||||||||| 
seq2  -CTATAG---TGCAGACCCCT--CGCTC---TGGTAC-TTCTCTAGCTC-  85

seq1  TCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACT  150
        |||   ||| |||||||| ||||  ||||||||||| |||||| ||| 
seq2  -TCAT---GGGGCCTGTGAT-CATC--ATAGCTGACTGGGAGCAT-CAC-  126

seq1  TCTGTGTTTGCTAGGCCCCGGCATAGCCTCACACGAGACAGCTATATTAG  200
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGCTAG--CCCGGCATAGCCTCACACGAGACAGCTATATTAG  174

seq1  GGTCCTTTCAGCAAAATCTTGCTGGCATGTGCAATAGTGTTTGCTTTTGG  250
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTCC-TTCAGC-AAATCTTGCTGGCATGTGCAATAGTGTTTGCTTTTGG  222

seq1  TTAGCCTGAATCTTCTTAAAGGGACAAAATTGAGATGGTTATTGTAGGAC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAG-CTGAATCTTCTTAAAGGGACAAAATTGAGATGGTTATTGTAGGAC  271

seq1  AACTACCTGCCTTTTTTTGTTTTTGTTTTTGTTTTTTAATGCTAATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTGCCTTTTTTTGTTTTTGTTTTTGTTTTTTAATGCTAATGGAT  321

seq1  GGTTATTGTTTCTTTTTAAGGTTATAGATACTCTGTTTTTCAAACCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGTTTCTTTTTAAGGTTATAGATACTCTGTTTTTCAAACCACTG  371

seq1  TTCTCTTCTAGTGTGCATCCTTTGTGATAGCCAGAGCGGACCTTTAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTAGTGTGCATCCTTTGTGATAGCCAGAGCGGACCTTTAGGCC  421

seq1  TCTGCTTTGTACACTGTTAATTTGGGATTCATGTGTTTCTTTGACCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTGTACACTGTTAATTTGGGATTCATGTGTTTCTTTGACCTTCT  471

seq1  GTACAAGGCTGATGGATGAGTTTTTAAGCATCTTTAAATGAATTACAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGCTGATGGATGAGTTTTTAAGCATCTTTAAATGAATTACAATA  521

seq1  TATGCCAAACTTATATTTTTGTAATAGTTCTGCCAAAGTGGACTACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAAACTTATATTTTTGTAATAGTTCTGCCAAAGTGGACTACAGTA  571

seq1  GATGGCTTATTTCCACATTCCTCTGGAATGTGCATGTTCATAAAATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTATTTCCACATTCCTCTGGAATGTGCATGTTCATAAAATTTTA  621

seq1  CGCCTGTCACTTGGTAATTCGCCAACATTCATTTGCTATCACATCATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTCACTTGGTAATTCGCCAACATTCATTTGCTATCACATCATGAT  671

seq1  CATTTTTTTTAAACCAACAATGAAAAAAATACCACTCAAACACAGGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTAAACCAACAATGAAAAAAATACCACTCAAACACAGGTATT  721

seq1  AGCATAGAGAGAAATGCCTTCCAATAGTTTGTCATTTGGGATGTCTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAGAGAAATGCCTTCCAATAGTTTGTCATTTGGGATGTCTAAGC  771

seq1  TAGAGAAAGATGAGCTCTATTAAAAAAAAAAAAAGGTGCAGCTGAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGATGAGCTCTATTAAAAAAAAAAAAAGGTGCAGCTGAAAAGA  821

seq1  AGAGGCAGCTCAGCCAGCGAGTTTGGTGCTCACCACTAGCCTGGGAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGCTCAGCCAGCGAGTTTGGTGCTCACCACTAGCCTGGGAAGTT  871

seq1  CATCTCTCTGTGGGCAGTGTACACAGAGCAGAACACACACACACAGCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTGTGGGCAGTGTACACAGAGCAGAACACACACACACAGCCTT  921

seq1  CTCCCAGATGATATCCTGAAACTCAATTAAATTGTAACTTGTTCTGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGATGATATCCTGAAACTCAATTAAATTGTAACTTGTTCTGTTAG  971

seq1  CTGAAACTCTTGGCTTCAAGTGACAAGTACTCAACTCAAATTGGCTTAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTCTTGGCTTCAAGTGACAAGTACTCAACTCAAATTGGCTTAAT  1021

seq1  TTCAAAAGGAGAGGAGTTAGAATTTTATAGTTTACATAACCAGGAGTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGGAGAGGAGTTAGAATTTTATAGTTTACATAACCAGGAGTCCA  1071

seq1  TGTGACGCTATCAGAATGCCATTGCTCTCCATCCCTGGGCTCTCCTCATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACGCTATCAGAATGCCATTGCTCTCCATCCCTGGGCTCTCCTCATC  1121

seq1  TCTTGGCTGAATTC  1164
      ||||||||||||||
seq2  TCTTGGCTGAATTC  1135

seq1: chr14_29180971_29182082
seq2: B6Ng01-267O12.g_69_1176

seq1  GAATTCCTTACCATTCCCAGATAATGGTGTGTTTTTTTCCTCTTCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACCATTCCCAGATAATGGTGTGTTTTTTTCCTCTTCTTAAA  50

seq1  ATAGTATTCATTGCTTTTTCCAGGTCCTTGTGATGATGGCTTGCCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTCATTGCTTTTTCCAGGTCCTTGTGATGATGGCTTGCCATTAT  100

seq1  CCAAAAATGCCCTATTATCTTCCTGAATCCTTCTCTGAAAGTCGGCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATGCCCTATTATCTTCCTGAATCCTTCTCTGAAAGTCGGCTTAG  150

seq1  AAGTGGTTCCTCAAAGCTTCCTCTAAGTTTTTCTAGCTGGCCTTATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTTCCTCAAAGCTTCCTCTAAGTTTTTCTAGCTGGCCTTATCTTC  200

seq1  CTCTCCTGACCTGTTGAAGCTCTCAAAGTCCTGGTTCAATTTTCTGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGACCTGTTGAAGCTCTCAAAGTCCTGGTTCAATTTTCTGAGAG  250

seq1  TTTAGAAGCCAGTATTTCTCGGAGCTTCCTTTTCATTCTTTGAGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGCCAGTATTTCTCGGAGCTTCCTTTTCATTCTTTGAGTCTCTC  300

seq1  TCTTGTGATCTTTTGTGGGTTTTTATGGTGAGGCAATGCCCTGTCCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGATCTTTTGTGGGTTTTTATGGTGAGGCAATGCCCTGTCCCTTA  350

seq1  TCCTTCTGGCTCTTCTCTAGAGAGGACTACAAGACAACATATCTACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGCTCTTCTCTAGAGAGGACTACAAGACAACATATCTACTGTT  400

seq1  CCTTCAGCAGTGCAGAGAGACTAGGCATGGACACTGTTACGTGTCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCAGTGCAGAGAGACTAGGCATGGACACTGTTACGTGTCTTCCT  450

seq1  AGAATCTTCACAATAGTCTTGAGCCTGAAGACTGATGTTAGCTTCGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCACAATAGTCTTGAGCCTGAAGACTGATGTTAGCTTCGTCTG  500

seq1  TAAGAGGCAGAGGCTGAAGGGTCTTCTGAAGTGTCTTCTCCATGCAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCAGAGGCTGAAGGGTCTTCTGAAGTGTCTTCTCCATGCAGCAT  550

seq1  GAACCAGGTGGAAGAACTTTGACCTCTGTGCTCTGTGGCTTTTTGCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGTGGAAGAACTTTGACCTCTGTGCTCTGTGGCTTTTTGCCACC  600

seq1  CCCACTACTTGCAAAGGAGACTTGCGCCCAAGTCTTGGGTACAAATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTACTTGCAAAGGAGACTTGCGCCCAAGTCTTGGGTACAAATGAGA  650

seq1  GATGGTAAAGCCTTTTGTTCCCACCTCCCTTAGTGCTGGAAGAGTTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAAAGCCTTTTGTTCCCACCTCCCTTAGTGCTGGAAGAGTTGGAG  700

seq1  AGTTGAGTGTTGATGTTGGGTTTTAAAGCTTTCCATGTTTATGTGAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTGTTGATGTTGGGTTTTAAAGCTTTCCATGTTTATGTGAGTGC  750

seq1  TGTCCACATCCCATTCATAGCCAGCCTGATGTTGGCATGGTAGATGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACATCCCATTCATAGCCAGCCTGATGTTGGCATGGTAGATGTAAC  800

seq1  TCCATCCCTCCCACCTCCCTCCTTAGAAACCTGAGCCTCTTCTGTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCTCCCACCTCCCTCCTTAGAAACCTGAGCCTCTTCTGTTTGTT  850

seq1  TTTTAGATATTTTAAT-CCTTTTTGGAACAAAATAGAGTATAAGCAAACA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTAGATATTTTAATCCCTTTTTGGAACAAAATAGAGTATAAGCAAACA  900

seq1  AAACTGAATATTTTACA-TTTTTAATAGCAGCAAACACTTTCATAATATT  948
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAACTGAATATTTTACATTTTTTAATAGCAGCAAACACTTTCATAATATT  950

seq1  TTTGAAAATTAAC-TTTTTGTCACCTGGTGGCTTGTGGCCTTTGGAACCA  997
      ||||||||||||| ||||||||| |||||||||||||||| |||| ||||
seq2  TTTGAAAATTAACTTTTTTGTCA-CTGGTGGCTTGTGGCC-TTGGGACCA  998

seq1  CACTGTCACTTCCTGGCCCTGGGTTTACATAGCATATTTAAGGCAGCAAG  1047
      ||||||||||| |||| |||||| |||| ||||||||||||||||||| |
seq2  CACTGTCACTT-CTGG-CCTGGG-TTAC-TAGCATATTTAAGGCAGCAGG  1044

seq1  TTTGGGGACATTAATGGTAGCCAATAG-CTAGCATCATCTGTGATGTAGA  1096
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGGGACA-TAATGGTAGCCAATAGCCTAGCATCATCTGTGATGTAGA  1093

seq1  CTTTTCCATGTTGTGA  1112
      | |||||||| |||||
seq2  C-TTTCCATGGTGTGA  1108