BAC Information

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BAC

Clone NameB6Ng01-269A05
Chromosome14 (Build37)
Map Location 23,830,191 - 23,831,310
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneEG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269A05.bB6Ng01-269A05.g
ACCGA071725GA071726
length1,125856
definitionB6Ng01-269A05.b B6Ng01-269A05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattcatcatgttcaaatttttttaaatgtatccaataaaatggaggg
aaagaagaaaatgggaagccagcaggccacaggcattattctccttcaac
accagctcagtaacaattatctgtctgtgtagggtatgggttattagaaa
ctcaccataaaacatgagacaaactaaaaggggtattaaggaaacaaagg
caaaaataaaagaagtaggttccattttgtttattttatatttagtgtat
gtgtctgttttggtgtgtacactgatgtgtgtgtgtgtgtgtgtttgtgt
ccatgttttaaggtcacagtgagtatgcatgcatttatatgggtgccatg
tgtgaaggtcagacaaccacttgcaagacaatttggtcctctccatcttc
catgtcctatctgcatgaatatttgtaaaacatttgttttattccacaag
tcatggacatagtataaggaaggttcttaaagaccaaatgttaataaaat
aacaccacagagagactgtgcccacttgtgatagacagacacttcacatg
aagcaaggaataaatgagaactgatttggagctggcatcatttccagtgt
gctgatggttatttgtgaaaaggcataaacgatgattttttaaaaacatc
taagggctggagagcagttaagagcactgactactcttccagaggtcctg
agttcaattcccatcagccacgtgtggctcacaaccatctgtaatgggat
ccagtgcccttttctagtgtgcactcataaataaataaaaaatttaaagt
atgttttaaaaactctaagttgttcagtggtagagtgtctacttagtatg
tatgacaccctgagtcaagtctcagcatttccaaacaaactcaaaatcaa
acaaacaaataaaataagtagacaaattaactctaaaactagtaccttca
ccccttttcctggacatttgaccttctgactatctccctgactttcagcc
ttagtttgacagtgaaagcagagtttttagaagtatctacagcattggtg
ccattgactggcagacattctgctcatcgttccttatactggtttatgct
tttaatttccaggcatattccattt

gaattccagaagattaagattaggagttcaaggtcaactgggattaaagt
cgtggtggcacacacttttttttttctttttttttttcttttttcttttt
tttttccattttttattaggtatttagctcatttacatttccaatgctat
accaaaagtcccccatatccacccacccccactcccctgcccacccactc
cccctttttggccctggggttcccctgtactggggcatataaagtttgca
agtccaatgggcctctctttccagtgatggctgactaggccatcttttga
tatatatgcagctagagtcaagagctccggggtactggttagttcataat
gttgttccacctatagggttgcagatccctttagctccttggctactttc
tctagctcctccattgggagccctatgatccatccattagctgattggga
acaaaacacccatggaaggagttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccatcccataat
cagcatccaaacgctgacaccattgcatacactagaaagattttatcgaa
aggacccagatttagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctcacaatcatctaatggtggcacacacttttaatc
tgggctacaccttctggtagagacctacataaggacattggaagaaggaa
gactctctctctccttcacctgcttgccttgtgggactgagcaattgcta
gatccttgaaccacagcttgctgctgaccatttgttgggagttggactgc
acactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_23830191_23831310
seq2: B6Ng01-269A05.b_46_1169 (reverse)

seq1  AAATGGGAATAATGCTGGAAATTAAAAGCATAAAACAGTATAAGGAACGA  50
      |||| ||||||   |||||||||||||||||||| |||||||||||||||
seq2  AAAT-GGAATATGCCTGGAAATTAAAAGCATAAACCAGTATAAGGAACGA  49

seq1  TGAGCAGAATGTCTGCCAGTC-ATTGCACCAATTGCTGTAGATTACTTCT  99
      ||||||||||||||||||||| || ||||||| ||||||||| |||||||
seq2  TGAGCAGAATGTCTGCCAGTCAATGGCACCAA-TGCTGTAGA-TACTTCT  97

seq1  -AAAACTCTGC-TTCACTGTCAAACCTAAGGCTG-AAGTCAGGGAGATAG  146
       |||||||||| |||||||||||| ||||||||| |||||||||||||||
seq2  AAAAACTCTGCTTTCACTGTCAAA-CTAAGGCTGAAAGTCAGGGAGATAG  146

seq1  TCAG-AGGTC-AATGTCCAGG-AAAGGGGTGAAGGTACTAGTTTTAGAGT  193
      |||| ||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TCAGAAGGTCAAATGTCCAGGAAAAGGGGTGAAGGTACTAGTTTTAGAGT  196

seq1  T-ATTTGTCTACTTATTTTATTTGTTTGTTTGATTTTGAGTTTGTTTGGA  242
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTCTACTTATTTTATTTGTTTGTTTGATTTTGAGTTTGTTTGGA  246

seq1  AATGCTGAGACTTGACTCAGGGTGTCATACATACTAAGTAGACACTCTAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGACTTGACTCAGGGTGTCATACATACTAAGTAGACACTCTAC  296

seq1  CACTGAACAACTTAGAGTTTTTAAAACATACTTTAAATTTTTTATTTATT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACAACTTAGAGTTTTTAAAACATACTTTAAATTTTTTATTTATT  346

seq1  TATGAGTGCACACTAGAAAAGGGCACTGGATCCCATTACAGATGGTTGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGCACACTAGAAAAGGGCACTGGATCCCATTACAGATGGTTGTG  396

seq1  AGCCACACGTGGCTGATGGGAATTGAACTCAGGACCTCTGGAAGAGTAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACGTGGCTGATGGGAATTGAACTCAGGACCTCTGGAAGAGTAGT  446

seq1  CAGTGCTCTTAACTGCTCTCCAGCCCTTAGATGTTTTTAAAAAATCATCG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTTAACTGCTCTCCAGCCCTTAGATGTTTTTAAAAAATCATCG  496

seq1  TTTATGCCTTTTCACAAATAACCATCAGCACACTGGAAATGATGCCAGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCTTTTCACAAATAACCATCAGCACACTGGAAATGATGCCAGCT  546

seq1  CCAAATCAGTTCTCATTTATTCCTTGCTTCATGTGAAGTGTCTGTCTATC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAGTTCTCATTTATTCCTTGCTTCATGTGAAGTGTCTGTCTATC  596

seq1  ACAAGTGGGCACAGTCTCTCTGTGGTGTTATTTTATTAACATTTGGTCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGGCACAGTCTCTCTGTGGTGTTATTTTATTAACATTTGGTCTT  646

seq1  TAAGAACCTTCCTTATACTATGTCCATGACTTGTGGAATAAAACAAATGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACCTTCCTTATACTATGTCCATGACTTGTGGAATAAAACAAATGT  696

seq1  TTTACAAATATTCATGCAGATAGGACATGGAAGATGGAGAGGACCAAATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATATTCATGCAGATAGGACATGGAAGATGGAGAGGACCAAATT  746

seq1  GTCTTGCAAGTGGTTGTCTGACCTTCACACATGGCACCCATATAAATGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAAGTGGTTGTCTGACCTTCACACATGGCACCCATATAAATGCA  796

seq1  TGCATACTCACTGTGACCTTAAAACATGGACACAAACACACACACACACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTCACTGTGACCTTAAAACATGGACACAAACACACACACACACA  846

seq1  CACATCAGTGTACACACCAAAACAGACACATACACTAAATATAAAATAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTGTACACACCAAAACAGACACATACACTAAATATAAAATAAA  896

seq1  CAAAATGGAACCTACTTCTTTTATTTTTGCCTTTGTTTCCTTAATACCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAACCTACTTCTTTTATTTTTGCCTTTGTTTCCTTAATACCCC  946

seq1  TTTTAGTTTGTCTCATGTTTTATGGTGAGTTTCTAATAACCCATACCCTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTGTCTCATGTTTTATGGTGAGTTTCTAATAACCCATACCCTA  996

seq1  CACAGACAGATAATTGTTACTGAGCTGGTGTTGAAGGAGAATAATGCCTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGATAATTGTTACTGAGCTGGTGTTGAAGGAGAATAATGCCTG  1046

seq1  TGGCCTGCTGGCTTCCCATTTTCTTCTTTCCCTCCATTTTATTGGATACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGCTGGCTTCCCATTTTCTTCTTTCCCTCCATTTTATTGGATACA  1096

seq1  TTTAAAAAAATTTGAACATGATGAATTC  1120
      ||||||||||||||||||||||||||||
seq2  TTTAAAAAAATTTGAACATGATGAATTC  1124


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