BAC Information

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BAC

Clone NameB6Ng01-271B06
Chromosome14 (Build37)
Map Location 21,833,066 - 22,017,431
singlet/doubletdoublet
Overlap geneVcl, Ap3m1, Adk
Upstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B06.bB6Ng01-271B06.g
ACCGA073255GA073256
length1,1431,126
definitionB6Ng01-271B06.b B6Ng01-271B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,833,066 - 21,834,206)(22,016,313 - 22,017,431)
sequence
gaattcactttgtagactaggctgacctcgaactccgagatctgcctgct
tctgcctcccaagagctgggattaatggcatgtgtcaaccaacactgctt
ggctaggaagctgaatcaaaacaaaagatcagaatgagtcaagggacctc
aggtggtggatgtagaacattggaacgagagtggagcttgctatcaaact
acaaaacctttacagattgtctgacttgagtcagagttagacaccaagta
tggaagtggcactctcaattatcgtcagtaggacatttaaaaaaaaaagg
aagtattctgctaggctcctggcaggctctatatgtagcataaaactgac
ccagtgctgtctggtagacgttgttttccagatactgatcctaatgtcac
tcaaacaaatagaaacttttttgtcatttgtaagttagtttttttttttt
ttaaaattagagtctctaatgatatccctgagggaaagaaaagttaactt
tttaaacgagagaaccattttgcatttagaactaataaaaatcacctatc
cttgcctctgtgttctgtctggtatgagcacaagctatcgtttttcccat
tgaggtcaagggcagagtttttacaacattaatggtaatgggatacatta
gaggaggctggagtcaggtaaggactctttgtggatacttggggattgta
atgcacccggttgtctatggtagagcctggaggggtttatcgttctcttc
aaagtaagaaggcctttggggaatgaaattatttagtctttgcatttgtg
aacttgttgtaaagtatatagtcctgtgtgtgctcttggtaagtaggttt
taaacgaagatttggggatgtgccctctttgtgtatgatgcttaagactg
aaacctctgaggaaatacataaagggtcaagatttgccatttgattaatg
ttttagtataagatctttgagcagttgcagatcagattaaaaagaccttt
cttcaggtttcctgatgcattatatggaaatcattccttaaatggcttta
ttttattttttcctcaggtattggagtgaaaggccagccaattttggaaa
acattcaggcagcttggagtccacagcagaataaggcggctgc
gaattcacagactatactttcatccaaataattttgtcgtttttaaagct
cttatcaaaaaacacttcttaaaaattatgtaccgtggaattatccagcc
aaaagtagataattaaatgatataaaatatacaattagattgacttagtt
aattgccaaataatattttcatatccacaagttccatacatagtgcagag
gttccagaaatgcctttactcaacttgtgctggtgattatatattccatg
tctacagtccattattaaagcccaggacgtcagaatcatctcagtactaa
ctacacatgtacacaaaactcattgcatttcacacacattcttatttgtg
tacgagttcagtcccacgatattttgacctctgtagagtcagccattcca
tttcccaatttcccccagctctgcagtatttggaagacactattttaaaa
gccactctagaactcttcaattccatgctctgcgtggagattcatgggat
atgtagtctgtaccgggctgtcttctctataaagctccacaggatcgcac
tgtatagatctagcacagtctgtttattcacctgttgaagtttttctgga
ttgtttccagtgtgtgggagaataaaaataaaaatgtcataaatatttgt
ataacaggttttttacatgaacataaatttcatttctatggtaaatgaat
atccagggacataattggtgaattgcattgaaaatgtctggctgtacaat
aaacaaactgttttgcagaggggttctgttattttatattcccaccatca
atttatgagagagattctacatcctctccagcacttactgtaataaataa
taaagattcttacgcttgatttatttttcagacaagatgtcacactgaag
cccaggctggcccagaacttactgtatgatccaagtcactcaaacccatg
gtaatcttttctgcctcacatgtctgattactagattaaaggcgtgaccg
acctgagagggatctagttgggaagtagttttttatttttagaagaatat
ttatatccatgtagtaattacctgacctggcagttttaatttgtacattt
gtacctattaataaggagaaatgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21833066_21834206
seq2: B6Ng01-271B06.b_44_1186

seq1  GAATTCACTTTGTAGACTAGGCTGACCTCGAACTCCGAGATCTGCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACTAGGCTGACCTCGAACTCCGAGATCTGCCTGCT  50

seq1  TCTGCCTCCCAAGAGCTGGGATTAATGGCATGTGTCAACCAACACTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGAGCTGGGATTAATGGCATGTGTCAACCAACACTGCTT  100

seq1  GGCTAGGAAGCTGAATCAAAACAAAAGATCAGAATGAGTCAAGGGACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGAAGCTGAATCAAAACAAAAGATCAGAATGAGTCAAGGGACCTC  150

seq1  AGGTGGTGGATGTAGAACATTGGAACGAGAGTGGAGCTTGCTATCAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGGATGTAGAACATTGGAACGAGAGTGGAGCTTGCTATCAAACT  200

seq1  ACAAAACCTTTACAGATTGTCTGACTTGAGTCAGAGTTAGACACCAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTTTACAGATTGTCTGACTTGAGTCAGAGTTAGACACCAAGTA  250

seq1  TGGAAGTGGCACTCTCAATTATCGTCAGTAGGACATTTAAAAAAAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGCACTCTCAATTATCGTCAGTAGGACATTTAAAAAAAAAAGG  300

seq1  AAGTATTCTGCTAGGCTCCTGGCAGGCTCTATATGTAGCATAAAACTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCTGCTAGGCTCCTGGCAGGCTCTATATGTAGCATAAAACTGAC  350

seq1  CCAGTGCTGTCTGGTAGACGTTGTTTTCCAGATACTGATCCTAATGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGTCTGGTAGACGTTGTTTTCCAGATACTGATCCTAATGTCAC  400

seq1  TCAAACAAATAGAAACTTTTTTGTCATTTGTAAGTTAGTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAATAGAAACTTTTTTGTCATTTGTAAGTTAGTTTTTTTTTTTT  450

seq1  TTAAAATTAGAGTCTCTAATGATATCCCTGAGGGAAAGAAAAGTTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAGAGTCTCTAATGATATCCCTGAGGGAAAGAAAAGTTAACTT  500

seq1  TTTAAACGAGAGAACCATTTTGCATTTAGAACTAATAAAAATCACCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACGAGAGAACCATTTTGCATTTAGAACTAATAAAAATCACCTATC  550

seq1  CTTGCCTCTGTGTTCTGTCTGGTATGAGCACAAGCTATCGTTTTTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCTGTGTTCTGTCTGGTATGAGCACAAGCTATCGTTTTTCCCAT  600

seq1  TGAGGTCAAGGGCAGAGTTTTTACAACATTAATGGTAATGGGATACATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAAGGGCAGAGTTTTTACAACATTAATGGTAATGGGATACATTA  650

seq1  GAGGAGGCTGGAGTCAGGTAAGGACTCTTTGTGGATACTTGGGGATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCTGGAGTCAGGTAAGGACTCTTTGTGGATACTTGGGGATTGTA  700

seq1  ATGCACCCGGTTGTCTATGGTAGAGCCTGGAGGGGTTTATCGTTCTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCGGTTGTCTATGGTAGAGCCTGGAGGGGTTTATCGTTCTCTTC  750

seq1  AAAGTAAGAAGGCCTTTGGGGAATGAAATTATTTAGTCTTTGCATTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGAAGGCCTTTGGGGAATGAAATTATTTAGTCTTTGCATTTGTG  800

seq1  AACTTGTTGTAAAGTATATAGTCCTGTGTGTGCTCTTGGTAAGTAGG-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACTTGTTGTAAAGTATATAGTCCTGTGTGTGCTCTTGGTAAGTAGGTTT  850

seq1  TAAACGAAGATTTGGGGATGTG-CCTCTTTGTGTATGATGCTTAAGACTG  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAACGAAGATTTGGGGATGTGCCCTCTTTGTGTATGATGCTTAAGACTG  900

seq1  -AACCTCTGAGGAAATACATAAA-GGTCAAGATTTGCCATTTGATTATTG  946
       |||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  AAACCTCTGAGGAAATACATAAAGGGTCAAGATTTGCCATTTGATTAATG  950

seq1  TTTTAGTAATAAGATCTTTGAGCAGTTGCAGAATCAGATTAAAAAGACCT  996
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTAGT-ATAAGATCTTTGAGCAGTTGCAG-ATCAGATTAAAAAGACCT  998

seq1  TTCTTCAGGTTTCCTGATGCATTATATGGAAATACATTTCCTTAATGTCT  1046
      ||||||||||||||||||||||||||||||||| |||| | | |||| ||
seq2  TTCTTCAGGTTTCCTGATGCATTATATGGAAAT-CATTCCTTAAATGGCT  1047

seq1  TTATTTTATTTTTTTCTCAAGGTATTTGA-TGAAAGGGCAGCCAATTTTG  1095
      |||||||||||||| ||| ||||||| || ||||||| ||||||||||||
seq2  TTATTTTATTTTTTCCTC-AGGTATTGGAGTGAAAGGCCAGCCAATTTTG  1096

seq1  AAAACCATTCAGGAAGGCTTGGAG-CCACAGCAG-AGAAGGCGGCTGC  1141
       ||| |||||||| | |||||||| ||||||||| | |||||||||||
seq2  GAAAACATTCAGGCA-GCTTGGAGTCCACAGCAGAATAAGGCGGCTGC  1143

seq1: chr14_22016313_22017431
seq2: B6Ng01-271B06.g_63_1188 (reverse)

seq1  AGACATTTCTCC-TATTAATAGTTACAAATGTACAAATTAAAACTGC--A  47
      |||||||||||| ||||||||| ||||||||||||||||||||||||   
seq2  AGACATTTCTCCTTATTAATAGGTACAAATGTACAAATTAAAACTGCCAG  50

seq1  GTCAGGT-ATTACTACATGAATATTAAATAT--CTCT-AAAATAAAAACT  93
      ||||||| ||||||||||| ||| |||||||   ||| ||||||||||  
seq2  GTCAGGTAATTACTACATGGATA-TAAATATTCTTCTAAAAATAAAAAAC  99

seq1  TACTT-CCAACTAGATCCCTCTCAGGTCGGTCACGCCTTTAATTCTAGTA  142
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TACTTCCCAACTAGATCCCTCTCAGGTCGGTCACGCCTTTAA-TCTAGTA  148

seq1  ATCAGACATGTGAGGCAG-AAAGATTACCATGGGTTTGAGTGACTTGGAT  191
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCAGACATGTGAGGCAGAAAAGATTACCATGGGTTTGAGTGACTTGGAT  198

seq1  CATACAGTAAGTTCTGGGCCAGCCTGGGCTTCAGTGTGACATCTTGTCTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGTAAGTTCTGGGCCAGCCTGGGCTTCAGTGTGACATCTTGTCTG  248

seq1  AAAAATAAATCAAGCGTAAGAATCTTTATTATTTATTACAGTAAGTGCTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATCAAGCGTAAGAATCTTTATTATTTATTACAGTAAGTGCTG  298

seq1  GAGAGGATGTAGAATCTCTCTCATAAATTGATGGTGGGAATATAAAATAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATGTAGAATCTCTCTCATAAATTGATGGTGGGAATATAAAATAA  348

seq1  CAGAACCCCTCTGCAAAACAGTTTGTTTATTGTACAGCCAGACATTTTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCCTCTGCAAAACAGTTTGTTTATTGTACAGCCAGACATTTTCA  398

seq1  ATGCAATTCACCAATTATGTCCCTGGATATTCATTTACCATAGAAATGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCACCAATTATGTCCCTGGATATTCATTTACCATAGAAATGAA  448

seq1  ATTTATGTTCATGTAAAAAACCTGTTATACAAATATTTATGACATTTTTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTCATGTAAAAAACCTGTTATACAAATATTTATGACATTTTTA  498

seq1  TTTTTATTCTCCCACACACTGGAAACAATCCAGAAAAACTTCAACAGGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCTCCCACACACTGGAAACAATCCAGAAAAACTTCAACAGGTG  548

seq1  AATAAACAGACTGTGCTAGATCTATACAGTGCGATCCTGTGGAGCTTTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGACTGTGCTAGATCTATACAGTGCGATCCTGTGGAGCTTTAT  598

seq1  AGAGAAGACAGCCCGGTACAGACTACATATCCCATGAATCTCCACGCAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGACAGCCCGGTACAGACTACATATCCCATGAATCTCCACGCAGA  648

seq1  GCATGGAATTGAAGAGTTCTAGAGTGGCTTTTAAAATAGTGTCTTCCAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAATTGAAGAGTTCTAGAGTGGCTTTTAAAATAGTGTCTTCCAAA  698

seq1  TACTGCAGAGCTGGGGGAAATTGGGAAATGGAATGGCTGACTCTACAGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGAGCTGGGGGAAATTGGGAAATGGAATGGCTGACTCTACAGAG  748

seq1  GTCAAAATATCGTGGGACTGAACTCGTACACAAATAAGAATGTGTGTGAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATATCGTGGGACTGAACTCGTACACAAATAAGAATGTGTGTGAA  798

seq1  ATGCAATGAGTTTTGTGTACATGTGTAGTTAGTACTGAGATGATTCTGAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGAGTTTTGTGTACATGTGTAGTTAGTACTGAGATGATTCTGAC  848

seq1  GTCCTGGGCTTTAATAATGGACTGTAGACATGGAATATATAATCACCAGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCTTTAATAATGGACTGTAGACATGGAATATATAATCACCAGC  898

seq1  ACAAGTTGAGTAAAGGCATTTCTGGAACCTCTGCACTATGTATGGAACTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGAGTAAAGGCATTTCTGGAACCTCTGCACTATGTATGGAACTT  948

seq1  GTGGATATGAAAATATTATTTGGCAATTAACTAAGTCAATCTAATTGTAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATGAAAATATTATTTGGCAATTAACTAAGTCAATCTAATTGTAT  998

seq1  ATTTTATATCATTTAATTATCTACTTTTGGCTGGATAATTCCACGGTACA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATCATTTAATTATCTACTTTTGGCTGGATAATTCCACGGTACA  1048

seq1  TAATTTTTAAGAAGTGTTTTTTGATAAGAGCTTTAAAAACGACAAAATTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAAGAAGTGTTTTTTGATAAGAGCTTTAAAAACGACAAAATTA  1098

seq1  TTTGGATGAAAGTATAGTCTGTGAATTC  1119
      ||||||||||||||||||||||||||||
seq2  TTTGGATGAAAGTATAGTCTGTGAATTC  1126