BAC Information

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BAC

Clone NameB6Ng01-271K08
Chromosome14 (Build37)
Map Location 114,364,243 - 114,434,297
singlet/doubletdoublet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271K08.bB6Ng01-271K08.g
ACCGA073672GA073673
length1,138946
definitionB6Ng01-271K08.b B6Ng01-271K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,364,243 - 114,365,400)(114,433,781 - 114,434,297)
sequence
gaattctgcagctttgtcaatcttgtatctaaggaatagtgacattttta
tagtgttaaggatataattttactttacttataataaatatgttgaaatg
gttatctattcctgaaatattgttcaaacgtattctttttaattaacttc
tactttttattaattaacttattttttatgctccatatttattctcccca
acccgatgcaccctccaactcttccacatcccattctcctccccacccac
ctgtctccacgtggatgccccaaccccccactcctcctgaccactaaact
ccctgggacctggactggagagtctcctggtgcatcatctatgaatgaac
agagacctggcggtcttctactgtatgtaggttgggggcctcatagcagc
tggtgtatgcagtttggtggttcaatgtttgagagatctcagggtccaga
ttgattgagacttctggtgctcctacaggatcgcccttttcctcagcttc
tattagccttccctaattcagcaacatgggtcagctgttttctgcctatt
ggttgggtacaaatatctgcacctgactcaggtgcctgttgtgtctttca
taactgccccctaaaaaaacccaaaaagcagctgaaagaattgacttctt
tttattttaacattatatgtatattgatcatattacttcccttcctgaaa
gttcaccttgatcttccccaactccctagtcaccaaactccatgttctca
ctttctgtctcaaataatgaatgaaagtcaaaacaaaaagaaatgagaaa
aaggaaaaaaaaatcaccaatggaaaagataccaaaataaaaccaaaaac
tagcaaaagatatggagtctgattggtgttagccaactacttcctgggat
gctgccctagagtgtggttgtgatacttagttacattccattagggaaaa
aaaaatcgattcttttcttcttcaggaagaggcatcaattgcaaatagcc
ttcttagcatgtgttgagtcccattttgccctgatttggctcaggacaaa
caagctgcctgtgtttctgtgctgtcgaagctagcctgctcaggttgaga
ctgtctcagaaccttccattcaggtgactcagcatacc

gaattccttatatttttttggattcagttactaatatgtgtaaaattttt
tgtggtatatactgtttattctaaattttaattattaaagtttttgtatt
gatttattctattgataagaacaagggatgtttatatttttgccatattt
agaataccacttgtcaattgaagttttctttttaataaaatatttaaatt
aattattcaagtttagaactgtttaaaatgaagtatgtgttgccattttt
tcagtctttttgtttgtttgtttgtttgttttcgagacagggtttcactg
tatagccctggctatcctggaactcactctgtagaccaggctggccttga
actcagaaatctgcctgcctctgcctcccaagttctgggattaaaggtgt
gtgccaccaccaattttttcagtcttttttttttttcagtctttatgctg
ctttctatttttttgtctttttttaaaattcttctctcataatatatatc
ctgactgcagtttttcccctctttcgttcttctcagttttccccatcttc
cttctcccacatatccactgctcttccctttccctttaaaaatgaggtgg
agctggcctctcagggatatcaacagaacaacattgtgcaacaagttaca
acaaaactaggcacataccttcataccaaagctggacaaggcagtccagt
agtagaaaaagggccccatgagcaggcaaatgagtcagagacactcctat
gccctttggttggagtcccattaaaaccaaagcatatgtggcagaggatg
gccttgttggatatcagtgggaagtgcaaccctttatcctgagggtgtta
gatgccctagtgtaggggaatgccagagctggaaggcagagtgaatgggt
ggttgtgaagcaccctcatagaggaggggtttatgggaggggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114364243_114365400
seq2: B6Ng01-271K08.b_42_1179

seq1  GAATTCTGCAGCTTTGTCAATCTTGTATCTAAGGAATAGTGACATTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGCTTTGTCAATCTTGTATCTAAGGAATAGTGACATTTTTA  50

seq1  TAGTGTTAAGGATATAATTTTACTTTACTTATAATAAATATGTTGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTAAGGATATAATTTTACTTTACTTATAATAAATATGTTGAAATG  100

seq1  GTTATCTATTCCTGAAATATTGTTCAAACGTATTCTTTTTAATTAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTATTCCTGAAATATTGTTCAAACGTATTCTTTTTAATTAACTTC  150

seq1  TACTTTTTATTAATTAACTTATTTTTTATGCTCCATATTTATTCTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTATTAATTAACTTATTTTTTATGCTCCATATTTATTCTCCCCA  200

seq1  ACCCGATGCACCCTCCAACTCTTCCACATCCCATTCTCCTCCCCACCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGATGCACCCTCCAACTCTTCCACATCCCATTCTCCTCCCCACCCAC  250

seq1  CTGTCTCCACGTGGATGCCCCAACCCCCCACTCCTCCTGACCACTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCACGTGGATGCCCCAACCCCCCACTCCTCCTGACCACTAAACT  300

seq1  CCCTGGGACCTGGACTGGAGAGTCTCCTGGTGCATCATCTATGAATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGACCTGGACTGGAGAGTCTCCTGGTGCATCATCTATGAATGAAC  350

seq1  AGAGACCTGGCGGTCTTCTACTGTATGTAGGTTGGGGGCCTCATAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTGGCGGTCTTCTACTGTATGTAGGTTGGGGGCCTCATAGCAGC  400

seq1  TGGTGTATGCAGTTTGGTGGTTCAATGTTTGAGAGATCTCAGGGTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATGCAGTTTGGTGGTTCAATGTTTGAGAGATCTCAGGGTCCAGA  450

seq1  TTGATTGAGACTTCTGGTGCTCCTACAGGATCGCCCTTTTCCTCAGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGAGACTTCTGGTGCTCCTACAGGATCGCCCTTTTCCTCAGCTTC  500

seq1  TATTAGCCTTCCCTAATTCAGCAACATGGGTCAGCTGTTTTCTGCCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCTTCCCTAATTCAGCAACATGGGTCAGCTGTTTTCTGCCTATT  550

seq1  GGTTGGGTACAAATATCTGCACCTGACTCAGGTGCCTGTTGTGTCTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTACAAATATCTGCACCTGACTCAGGTGCCTGTTGTGTCTTTCA  600

seq1  TAACTGCCCCCTAAAAAAACCCAAAAAGCAGCTGAAAGAATTGACTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCCCCCTAAAAAAACCCAAAAAGCAGCTGAAAGAATTGACTTCTT  650

seq1  TTTATTTTAACATTATATGTATATTGATCATATTACTTCCCTTCCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAACATTATATGTATATTGATCATATTACTTCCCTTCCTGAAA  700

seq1  GTTCACCTTGATCTTCCCCAACTCCCTAGTCACCAAACTCCATGTTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCTTGATCTTCCCCAACTCCCTAGTCACCAAACTCCATGTTCTCA  750

seq1  CTTTCTGTCTCAAATAATGAATGAAAGTCAAAACAAAAAGAAATGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCTCAAATAATGAATGAAAGTCAAAACAAAAAGAAATGAGAAA  800

seq1  AAGGAAAAAAAAATCACCAATGGAAAAGATACCAAAATAAAACCAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAAATCACCAATGGAAAAGATACCAAAATAAAACCAAAAAC  850

seq1  TAGCAAAAGATATGGAGTCTGATTGGTGTTAGCCAACTACTTCCTGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAGATATGGAGTCTGATTGGTGTTAGCCAACTACTTCCTGGGAT  900

seq1  GCTGCCCTAGAGTGTGGTTGTGATACTTAGTTACATTCCATTAGGAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTGCCCTAGAGTGTGGTTGTGATACTTAGTTACATTCCATTAGGGAAAA  950

seq1  AAAAATCGATTC-TTTCTTCTTCAAGGAAGAGGCATCAATTGCAAATAG-  998
      |||||||||||| |||||||||| ||||||||||||||||||||||||| 
seq2  AAAAATCGATTCTTTTCTTCTTC-AGGAAGAGGCATCAATTGCAAATAGC  999

seq1  CTTCTTAGCATGTGTTGAGTCCCATTTTGGCCCTGATTTGGGCCTTCAGG  1048
      |||||||||||||||||||||||||||| ||||||||||||    |||||
seq2  CTTCTTAGCATGTGTTGAGTCCCATTTT-GCCCTGATTTGG---CTCAGG  1045

seq1  ACAAAACCAAGCCTGGCTTGTGTTTCTGTGGCCTGGTCGGAAAGCCTAAG  1098
      |||||  |||||   || ||||||||||||  || ||||  ||||   ||
seq2  ACAAA--CAAGC--TGCCTGTGTTTCTGTG--CT-GTCG--AAGC--TAG  1084

seq1  CCTGGCTCAAGTTTGAGACCTGTCTCAGACACTTCCATATCAGGGTGACT  1148
      ||| |||| || |||||| ||||||||||  ||||||| ||| |||||||
seq2  CCT-GCTC-AGGTTGAGA-CTGTCTCAGAACCTTCCAT-TCA-GGTGACT  1129

seq1  CAGCAATACC  1158
      |||| |||||
seq2  CAGC-ATACC  1138


seq1: chr14_114433781_114434297
seq2: B6Ng01-271K08.g_64_580 (reverse)

seq1  GGAAAAACTGCAGTCAGGATATATATTATGAGAGAAGAATTTTAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACTGCAGTCAGGATATATATTATGAGAGAAGAATTTTAAAAAAA  50

seq1  GACAAAAAAATAGAAAGCAGCATAAAGACTGAAAAAAAAAAAAGACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAAATAGAAAGCAGCATAAAGACTGAAAAAAAAAAAAGACTGAA  100

seq1  AAAATTGGTGGTGGCACACACCTTTAATCCCAGAACTTGGGAGGCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTGGTGGCACACACCTTTAATCCCAGAACTTGGGAGGCAGAGG  150

seq1  CAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  200

seq1  GGATAGCCAGGGCTATACAGTGAAACCCTGTCTCGAAAACAAACAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCAGGGCTATACAGTGAAACCCTGTCTCGAAAACAAACAAACAA  250

seq1  ACAAACAAAAAGACTGAAAAAATGGCAACACATACTTCATTTTAAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAGACTGAAAAAATGGCAACACATACTTCATTTTAAACAGT  300

seq1  TCTAAACTTGAATAATTAATTTAAATATTTTATTAAAAAGAAAACTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTTGAATAATTAATTTAAATATTTTATTAAAAAGAAAACTTCAA  350

seq1  TTGACAAGTGGTATTCTAAATATGGCAAAAATATAAACATCCCTTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGTGGTATTCTAAATATGGCAAAAATATAAACATCCCTTGTTCT  400

seq1  TATCAATAGAATAAATCAATACAAAAACTTTAATAATTAAAATTTAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATAGAATAAATCAATACAAAAACTTTAATAATTAAAATTTAGAAT  450

seq1  AAACAGTATATACCACAAAAAATTTTACACATATTAGTAACTGAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTATATACCACAAAAAATTTTACACATATTAGTAACTGAATCCAA  500

seq1  AAAAATATAAGGAATTC  517
      |||||||||||||||||
seq2  AAAAATATAAGGAATTC  517


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