BAC Information

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BAC

Clone NameB6Ng01-272A08
Chromosome14 (Build37)
Map Location 70,021,825 - 70,169,761
singlet/doubletdoublet
Overlap geneLoxl2, R3hcc1, Chmp7, Tnfrsf10b
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4
Downstream geneRhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272A08.bB6Ng01-272A08.g
ACCGA073949GA073950
length1,181974
definitionB6Ng01-272A08.b B6Ng01-272A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,021,825 - 70,023,018)(70,169,210 - 70,169,761)
sequence
gaattccttccacatacccctcagagggcccttggagcccagcacctctt
ctcaggaagacgtagaggacattgtattctcaagtggattgaattgaatg
taagactatccttgcaagaccatgaaaaaaaaaaaaacacaagggacaaa
atttatcattttctggtgagctccagaggtgagcaacccctttctaacag
tcaatgctttgaattcttccagtcagatgtttcagccttcagtcatgttg
cttgaagccttctgatgctgtagagtgttctgagactgtggatttgaaga
ggctcctcagagatattcaaagggatgctgaggatacagcttcctggtgt
ctgaccacaggaagaaatgggacttcatccaggctttttgacctacctct
cgtctctctctctcccctccctctccttgtgtggtgtatgtggtggtaca
caataccgtgtgtacatgtatgctgaggccagggaagacattaggtgtct
ccctctattgccttttttttttttttttttttgagacagagtctctggct
gaacttgaaaccctctgtctagactggttgtccagcaagtacccaggacc
cacctgtttacttatccagtacttgggttagaggaatacatacccaactt
ttatatggctgatcaggatttgaactcgatgcctcttgctttcacatcaa
gcatttttagccacagaaccatctccctttgccttttttcttttatttat
ttattttattatttttatatgtttgtctgtctctgtctctttctgtgcgc
gtgtgcatgtgtgcccatgtgccttccgaggccagaagatggtgtgaagt
cccttggagctagtgttacacatagttatgagccacctgaacctgggtgc
taggaattgaaacttgggtctttcttcaagagctcttaattaaccttgtc
atctccatcttttcctgacttcaggcaggaactgatctgaagaagcagaa
gttgcttcatccttcagatgtctcatgaatctggagaagcagatggggaa
tcttacattgtgttatattcagctgttcagaaaagagaagaaaccgtctc
tactgttcagaagaaagcgaagcctaaagccatgggtcagccaacttgaa
ctgctggtctgctcaaggctgaacttttccc
gaattcctagaagctcatgggacagccagcagcatactcagtgccgaaca
agagagatcctgcctgttccaaatgaggtagacagtgggaactgacacct
gaagccggcctctgatctccagacacattctatggtattgcactcacctg
aagtcacttagtgttgtgatgactattctcagttgtcaactagactacat
ttggaatgaactacaatccagaaatggagggcacacctgtgactcggatc
ctgaggcaggaagacttcctttgatctggatcctgaggtgggacaacaca
tgctttggatgcatatcctgtgcaattgtttgttggaagtatgtgatctg
tcttttattcttatcttataggggattacagttaagagattgcatgagtc
tcagactttgaacttcggacttttaaacattgttgagactatggtagact
atggagacttttgaaattagaccaaatgcagtttgcattatgctatagct
ataggcctatgggagccagggagtgggatgtggtggtttgagtgggtatg
gcccccatagactcatgggtttgaatgcttggcccatggggaatgtcact
attaggagatgtggccttattggaggaggtgtgaccttgttggagaaagt
gtgtcactgtgggggcagaattttgaggtctcctatgctcaagctatacc
cagtatggtacacagtcttctttgctgcctgtggatcaagatgtagaact
ctctgctcctccggcaccagtctgcttgcatgctgccatgcttcccacat
atgataatggacttaaacccatgaactgtaagccagcccactaaatgttt
tcttaatagtagctcagtggtcgtggcgtttcctcacaggaatgaaaatc
caagataagtggtgcaccaaagatttttttacccgcattcaggtatacat
taaggtagaacttaacaccgtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70021825_70023018
seq2: B6Ng01-272A08.b_48_1228

seq1  GAATTCCTTCCACATACCCCTCAGAGGGCCCTTGGAGCCCAGCACCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCACATACCCCTCAGAGGGCCCTTGGAGCCCAGCACCTCTT  50

seq1  CTCAGGAAGACGTAGAGGACATTGTATTCTCAAGTGGATTGAATTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGACGTAGAGGACATTGTATTCTCAAGTGGATTGAATTGAATG  100

seq1  TAAGACTATCCTTGCAAGACCATGAAAAAAAAAAAAACACAAGGGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTATCCTTGCAAGACCATGAAAAAAAAAAAAACACAAGGGACAAA  150

seq1  ATTTATCATTTTCTGGTGAGCTCCAGAGGTGAGCAACCCCTTTCTAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATTTTCTGGTGAGCTCCAGAGGTGAGCAACCCCTTTCTAACAG  200

seq1  TCAATGCTTTGAATTCTTCCAGTCAGATGTTTCAGCCTTCAGTCATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTTTGAATTCTTCCAGTCAGATGTTTCAGCCTTCAGTCATGTTG  250

seq1  CTTGAAGCCTTCTGATGCTGTAGAGTGTTCTGAGACTGTGGATTTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCCTTCTGATGCTGTAGAGTGTTCTGAGACTGTGGATTTGAAGA  300

seq1  GGCTCCTCAGAGATATTCAAAGGGATGCTGAGGATACAGCTTCCTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTCAGAGATATTCAAAGGGATGCTGAGGATACAGCTTCCTGGTGT  350

seq1  CTGACCACAGGAAGAAATGGGACTTCATCCAGGCTTTTTGACCTACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACAGGAAGAAATGGGACTTCATCCAGGCTTTTTGACCTACCTCT  400

seq1  CGTCTCTCTCTCTCCCCTCCCTCTCCTTGTGTGGTGTATGTGGTGGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTCTCTCTCCCCTCCCTCTCCTTGTGTGGTGTATGTGGTGGTACA  450

seq1  CAATACCGTGTGTACATGTATGCTGAGGCCAGGGAAGACATTAGGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCGTGTGTACATGTATGCTGAGGCCAGGGAAGACATTAGGTGTCT  500

seq1  CCCTCTATTGCCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATTGCCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCTGGCT  550

seq1  GAACTTGAAACCCTCTGTCTAGACTGGTTGTCCAGCAAGTACCCAGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGAAACCCTCTGTCTAGACTGGTTGTCCAGCAAGTACCCAGGACC  600

seq1  CACCTGTTTACTTATCCAGTACTTGGGTTAGAGGAATACATACCCAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTTACTTATCCAGTACTTGGGTTAGAGGAATACATACCCAACTT  650

seq1  TTATATGGCTGATCAGGATTTGAACTCGATGCCTCTTGCTTTCACATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCTGATCAGGATTTGAACTCGATGCCTCTTGCTTTCACATCAA  700

seq1  GCATTTTTAGCCACAGAACCATCTCCCTTTGCCTTTTTTCTTTTATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTAGCCACAGAACCATCTCCCTTTGCCTTTTTTCTTTTATTTAT  750

seq1  TTATTTTATTATTTTTATATGTTTGTCTGTCTCTGTCTCTTTCTGTGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTATTTTTATATGTTTGTCTGTCTCTGTCTCTTTCTGTGCGC  800

seq1  GTGTGCATGTGTGCCCATGTGCCTTCCGAGGCCAGAAGATGGTGTGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTGTGCCCATGTGCCTTCCGAGGCCAGAAGATGGTGTGAAGT  850

seq1  CCCTTGGAGCTAGTGTTACACATAGTTATGAGCCACCTG-ACCTGGGTGC  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTTGGAGCTAGTGTTACACATAGTTATGAGCCACCTGAACCTGGGTGC  900

seq1  TAGGAATTG-AACTTGGGTC-TTCTTCAAGAGCTCTTAATT-ACCTTGTC  946
      ||||||||| |||||||||| |||||||||||||||||||| ||||||||
seq2  TAGGAATTGAAACTTGGGTCTTTCTTCAAGAGCTCTTAATTAACCTTGTC  950

seq1  ATCTCCATCTTTTCCTGACTTCAGGCAGGAACTGATCTGAAGAAGGCAGA  996
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCTCCATCTTTTCCTGACTTCAGGCAGGAACTGATCTGAAGAA-GCAGA  999

seq1  AGTGCCTCCATCCTTCCAGATGTCTCCATGAATCTGGAGAAGCAGATGGG  1046
      |||  || ||||||| ||||||||| ||||||||||||||||||||||||
seq2  AGTTGCTTCATCCTT-CAGATGTCT-CATGAATCTGGAGAAGCAGATGGG  1047

seq1  GAATCTACCATGTTGGTTATATTCAGCTG-TCAGAAAAGGAGAGAAACGG  1095
      ||||||  ||| |  |||||||||||||| |||||||||   |||||| |
seq2  GAATCTTACAT-TGTGTTATATTCAGCTGTTCAGAAAAGAGAAGAAACCG  1096

seq1  TCTCTACTGTTCAGAGAAAAGCGAAGCCTAGAGCCATGGGGTCAGCACAG  1145
      |||||||||||||||  ||||||||||||| |||||| ||||||||  | 
seq2  TCTCTACTGTTCAGAAGAAAGCGAAGCCTAAAGCCAT-GGGTCAGCCAAC  1145

seq1  CTGGACTGCTTTGGGTGTCTGGTCTTCT-AAGGTGCCTGGAACTTTTCCC  1194
       || ||||          ||||||| || ||||   || |||||||||||
seq2  TTGAACTG----------CTGGTCTGCTCAAGG---CT-GAACTTTTCCC  1181

seq1: chr14_70169210_70169761
seq2: B6Ng01-272A08.g_486_1039 (reverse)

seq1  TTACGGTGTT-AGTTTTACC-TAATGTATACCTGAATGCGTGTAAAAAAA  48
      |||||||||| |||| |||| ||||||||||||||||||| |||||||||
seq2  TTACGGTGTTAAGTTCTACCTTAATGTATACCTGAATGCGGGTAAAAAAA  50

seq1  TCTTT-GTGCA-CACTTATCTTGG-GTTTCATTCCTGTGAGGAAACGCCA  95
      ||||| ||||| ||||||||||||  ||||||||||||||||||||||||
seq2  TCTTTGGTGCACCACTTATCTTGGATTTTCATTCCTGTGAGGAAACGCCA  100

seq1  CGACCAC-GAGCAACTTATAAAGAAAACATTTAAGTGGGGCTGGCTTACA  144
      ||||||| |||| || ||| |||||||||||| ||| |||||||||||||
seq2  CGACCACTGAGCTAC-TATTAAGAAAACATTT-AGT-GGGCTGGCTTACA  147

seq1  GTTTCATGGGTTT-AGTCCATTATCATTATGGTGGGAAGCATGGCAGCAT  193
      | ||||||||||| |||||||||||| ||| |||||||||||||||||||
seq2  G-TTCATGGGTTTAAGTCCATTATCA-TAT-GTGGGAAGCATGGCAGCAT  194

seq1  GCAAGCAGACTTGGTGCCGGAGGAGCAGAGAGTTCTACATCTTGATCCAC  243
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAGAC-TGGTGCCGGAGGAGCAGAGAGTTCTACATCTTGATCCAC  243

seq1  AGGCAGCAAAG-AGACTGTGTACCATACTGGGTATAGCTTGAGCATAGGA  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAAAGAAGACTGTGTACCATACTGGGTATAGCTTGAGCATAGGA  293

seq1  GACCTC-AAATTCTGCCCCCACAGTGACACACTTTCTCCAACAAGGTCAC  341
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAAATTCTGCCCCCACAGTGACACACTTTCTCCAACAAGGTCAC  343

seq1  ACCTCCTCCAATAAGGCCACATCTCCTAATAGTGACATTCCCCATGGGCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCCAATAAGGCCACATCTCCTAATAGTGACATTCCCCATGGGCC  393

seq1  AAGCATTCAAACCCATGAGTCTATGGGGGCCATACCCACTCAAACCACCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCAAACCCATGAGTCTATGGGGGCCATACCCACTCAAACCACCA  443

seq1  CATCCCACTCCCTGGCTCCCATAGGCCTATAGCTATAGCATAATGCAAAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACTCCCTGGCTCCCATAGGCCTATAGCTATAGCATAATGCAAAC  493

seq1  TGCATTTGGTCTAATTTCAAAAGTCTCCATAGTCTACCATAGTCTCAACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGGTCTAATTTCAAAAGTCTCCATAGTCTACCATAGTCTCAACA  543

seq1  ATGTTTAAAAG  552
      |||||||||||
seq2  ATGTTTAAAAG  554